Diffuse-interface model for rapid phase transformations in nonequilibrium systems

A thermodynamic approach to rapid phase transformations within a diffuse interface in a binary system is developed. Assuming an extended set of independent thermodynamic variables formed by the union of the classic set of slow variables and the space of fast variables, we introduce finiteness of the heat and solute diffusive propagation at the finite speed of the interface advancing. To describe the transformation within the diffuse interface, we use the phase-field model which allows us to follow the steep but smooth change of phases within the width of diffuse interface. The governing equations of the phase-field model are derived for the hyperbolic model, model with memory, and for a model of nonlinear evolution of transformation within the diffuse-interface. The consistency of the model is proved by the condition of positive entropy production and by the outcomes of the fluctuation-dissipation theorem. A comparison with the existing sharp-interface and diffuse-interface versions of the model is given.Comment: 15 pages, regular article submitted to Physical Review

A causal statistical family of dissipative divergence type fluids

In this paper we investigate some properties, including causality, of a particular class of relativistic dissipative fluid theories of divergence type. This set is defined as those theories coming from a statistical description of matter, in the sense that the three tensor fields appearing in the theory can be expressed as the three first momenta of a suitable distribution function. In this set of theories the causality condition for the resulting system of hyperbolic partial differential equations is very simple and allow to identify a subclass of manifestly causal theories, which are so for all states outside equilibrium for which the theory preserves this statistical interpretation condition. This subclass includes the usual equilibrium distributions, namely Boltzmann, Bose or Fermi distributions, according to the statistics used, suitably generalized outside equilibrium. Therefore this gives a simple proof that they are causal in a neighborhood of equilibrium. We also find a bigger set of dissipative divergence type theories which are only pseudo-statistical, in the sense that the third rank tensor of the fluid theory has the symmetry and trace properties of a third momentum of an statistical distribution, but the energy-momentum tensor, while having the form of a second momentum distribution, it is so for a different distribution function. This set also contains a subclass (including the one already mentioned) of manifestly causal theories.Comment: LaTex, documentstyle{article

Possible experiment to check the reality of a nonequilibrium temperature

An experiment is proposed to check the physical reality of a nonequilibrium absolute temperature previously proposed from theoretical grounds in the framework of extended irreversible thermodynamics

Diffusion in Stationary Flow from Mesoscopic Non-equilibrium Thermodynamics

We analyze the diffusion of a Brownian particle in a fluid under stationary flow. By using the scheme of non-equilibrium thermodynamics in phase space, we obtain the Fokker-Planck equation which is compared with others derived from kinetic theory and projector operator techniques. That equation exhibits violation of the fluctuation dissipation-theorem. By implementing the hydrodynamic regime described by the first moments of the non-equilibrium distribution, we find relaxation equations for the diffusion current and pressure tensor, allowing us to arrive at a complete description of the system in the inertial and diffusion regimes. The simplicity and generality of the method we propose, makes it applicable to more complex situations, often encountered in problems of soft condensed matter, in which not only one but more degrees of freedom are coupled to a non-equilibrium bath.Comment: 10 pages, accepted in Phys. Rev.

Diffusion in Stationary Flow from Mesoscopic Non-equilibrium Thermodynamics

We analyze the diffusion of a Brownian particle in a fluid under stationary flow. By using the scheme of non-equilibrium thermodynamics in phase space, we obtain the Fokker-Planck equation which is compared with others derived from kinetic theory and projector operator techniques. That equation exhibits violation of the fluctuation dissipation-theorem. By implementing the hydrodynamic regime described by the first moments of the non-equilibrium distribution, we find relaxation equations for the diffusion current and pressure tensor, allowing us to arrive at a complete description of the system in the inertial and diffusion regimes. The simplicity and generality of the method we propose, makes it applicable to more complex situations, often encountered in problems of soft condensed matter, in which not only one but more degrees of freedom are coupled to a non-equilibrium bath.Comment: 10 pages, accepted in Phys. Rev.

Generalised equilibrium of cosmological fluids in second-order thermodynamics

Combining the second-order entropy flow vector of the causal Israel-Stewart theory with the conformal Killing-vector property of $u_{i}/T$, where $u_{i}$ is the four-velocity of the medium and T its equilibrium temperature, we investigate generalized equilibrium states for cosmological fluids with nonconserved particle number. We calculate the corresponding equilibrium particle production rate and show that this quantity is reduced compared with the results of the previously studied first-order theory. Generalized equilibrium for massive particles turns out to be compatible with a dependence $\rho \propto a ^{-2}$ of the fluid energy density $\rho$ on the scale factor a of the Robertson-Walker metric and may be regarded as a realization of so-called K-matter.Comment: 17 pages, iopfts.tex file, submitted to Class. Quantum Gra

Some thoughts about nonequilibrium temperature

The main objective of this paper is to show that, within the present framework of the kinetic theoretical approach to irreversible thermodynamics, there is no evidence that provides a basis to modify the ordinary Fourier equation relating the heat flux in a non-equilibrium steady state to the gradient of the local equilibrium temperature. This fact is supported, among other arguments, through the kinetic foundations of generalized hydrodynamics. Some attempts have been recently proposed asserting that, in the presence of non-linearities of the state variables, such a temperature should be replaced by the non-equilibrium temperature as defined in Extended Irreversible Thermodynamics. In the approximations used for such a temperature there is so far no evidence that sustains this proposal.Comment: 13 pages, TeX, no figures, to appear in Mol. Phy

Transcriptomic profiling of TK2 deficient human skeletal muscle suggests a role for the p53 signalling pathway and identifies growth and differentiation factor-15 as a potential novel biomarker for mitochondrial myopathies

Background Mutations in the gene encoding thymidine kinase 2 (TK2) result in the myopathic form of mitochondrial DNA depletion syndrome which is a mitochondrial encephalomyopathy presenting in children. In order to unveil some of the mechanisms involved in this pathology and to identify potential biomarkers and therapeutic targets we have investigated the gene expression profile of human skeletal muscle deficient for TK2 using cDNA microarrays. Results We have analysed the whole transcriptome of skeletal muscle from patients with TK2 mutations and compared it to normal muscle and to muscle from patients with other mitochondrial myopathies. We have identified a set of over 700 genes which are differentially expressed in TK2 deficient muscle. Bioinformatics analysis reveals important changes in muscle metabolism, in particular, in glucose and glycogen utilisation, and activation of the starvation response which affects aminoacid and lipid metabolism. We have identified those transcriptional regulators which are likely to be responsible for the observed changes in gene expression. Conclusion Our data point towards the tumor suppressor p53 as the regulator at the centre of a network of genes which are responsible for a coordinated response to TK2 mutations which involves inflammation, activation of muscle cell death by apoptosis and induction of growth and differentiation factor 15 (GDF-15) in muscle and serum. We propose that GDF-15 may represent a potential novel biomarker for mitochondrial dysfunction although further studies are required