Meta-analysis of type 2 Diabetes in African Americans Consortium

Type 2 diabetes (T2D) is more prevalent in African Americans than in Europeans. However, little is known about the genetic risk in African Americans despite the recent identification of more than 70 T2D loci primarily by genome-wide association studies (GWAS) in individuals of European ancestry. In order to investigate the genetic architecture of T2D in African Americans, the MEta-analysis of type 2 DIabetes in African Americans (MEDIA) Consortium examined 17 GWAS on T2D comprising 8,284 cases and 15,543 controls in African Americans in stage 1 analysis. Single nucleotide polymorphisms (SNPs) association analysis was conducted in each study under the additive model after adjustment for age, sex, study site, and principal components. Meta-analysis of approximately 2.6 million genotyped and imputed SNPs in all studies was conducted using an inverse variance-weighted fixed effect model. Replications were performed to follow up 21 loci in up to 6,061 cases and 5,483 controls in African Americans, and 8,130 cases and 38,987 controls of European ancestry. We identified three known loci (TCF7L2, HMGA2 and KCNQ1) and two novel loci (HLA-B and INS-IGF2) at genome-wide significance (4.15 × 10(-94)<P<5 × 10(-8), odds ratio (OR)  = 1.09 to 1.36). Fine-mapping revealed that 88 of 158 previously identified T2D or glucose homeostasis loci demonstrated nominal to highly significant association (2.2 × 10(-23) < locus-wide P<0.05). These novel and previously identified loci yielded a sibling relative risk of 1.19, explaining 17.5% of the phenotypic variance of T2D on the liability scale in African Americans. Overall, this study identified two novel susceptibility loci for T2D in African Americans. A substantial number of previously reported loci are transferable to African Americans after accounting for linkage disequilibrium, enabling fine mapping of causal variants in trans-ethnic meta-analysis studies.Peer reviewe

IODP Expeditions 309 and 312 drill an intact section of upper oceanic basement into gabbros

The Integrated Ocean Drilling Program's (IODP) Expeditions 309 and 312 successfully completed the first sampling of an intact section of upper oceanic crust, through lavas and the sheeted dikes into the uppermost gabbros. Hole 1256D, which was initiated on the Ocean Drilling Program's (ODP) Leg 206, now penetrates to >1500 mbsf and >1250 m sub-basement. The first gabbroic rocks were encountered at 1407 mbsf. Below this, the hole penetrates 3c100 m into a complex zone of fractionated gabbros intruded into contact metamorphosed dikes

Microfaunal evidence of age and depositional environments of the Cerro Prieto section (Plio-Pleistocene), Baja California, Mexico

Microfossils including benthic and planktic foraminifera, ostracodes, calcareous algae, fish skeletal material, and fragments of pelecypods were found in 14 core samples from depths of 185 to 1952 m in the Cerro Prieto geothermal field, providing evidence of both the age and depositional history of sediments comprising the 3000-m-thick Pliocene and Pleistocene section in this area. Ostracodes of brackish water and marine origin constitute the most common microfossils present in this sequence occurring in 8 samples; in situ littoral and neritic species of benthic foraminifera occur in 5 samples with planktic species present in 2 samples. Distributional patterns of ostracodes and foraminifera together with previously analyzed lithofacies (Lyons and van de Kamp, 1980) indicate that the Cerro Prieto section represents an intertonguing complex of alluvial, deltaic, estuarine, and shallow marine environments deposited along the front of the Colorado River delta as it prograded across the Salton Trough during Pliocene and Pleistocene time. Foraminiferal evidence indicates that a sand and shale unit commonly present at depths between 700 and 1100 m represents a significant mid-Pleistocene marine incursion in the Cerro Prieto area. Tentative correlation of the Cerro Prieto section with the well dated Palm Springs Formation of the Imperial Valley, California area suggests that the Pliocene/Pleistocene boundary occurs at a depth of approximately 2000 m in the area of well M-93. Reworked specimens of Cretaceous foraminifera and fragments of the Cretaceous pelecypod Inoceramus were found in five samples further substantiating the Colorado Plateau provenance of a significant portion of the Colorado River deltaic sediments in the Cerro Prieto area