Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation.

Teleost fishes, thanks to their rapid evolution of sex determination mechanisms, provide remarkable opportunities to study the formation of sex chromosomes and the mechanisms driving the birth of new master sex determining (MSD) genes. However, the evolutionary interplay between the sex chromosomes and the MSD genes they harbor is rather unexplored. We characterized a male-specific duplicate of the anti-Müllerian hormone (amh) as the MSD gene in Northern Pike (Esox lucius), using genomic and expression evidence as well as by loss-of-function and gain-of-function experiments. Using RAD-Sequencing from a family panel, we identified Linkage Group (LG) 24 as the sex chromosome and positioned the sex locus in its sub-telomeric region. Furthermore, we demonstrated that this MSD originated from an ancient duplication of the autosomal amh gene, which was subsequently translocated to LG24. Using sex-specific pooled genome sequencing and a new male genome sequence assembled using Nanopore long reads, we also characterized the differentiation of the X and Y chromosomes, revealing a small male-specific insertion containing the MSD gene and a limited region with reduced recombination. Our study reveals an unexpectedly low level of differentiation between a pair of sex chromosomes harboring an old MSD gene in a wild teleost fish population, and highlights both the pivotal role of genes from the amh pathway in sex determination, as well as the importance of gene duplication as a mechanism driving the turnover of sex chromosomes in this clade

The rise and fall of the ancient northern pike master sex determining gene

The understanding of the evolution of variable sex determination mechanisms across taxa requires comparative studies among closely related species. Following the fate of a known master sex-determining gene, we traced the evolution of sex determination in an entire teleost order (Esociformes). We discovered that the northern pike (Esox lucius) master sex-determining gene originated from a 65 to 90 million-year-old gene duplication event and that it remained sex-linked on undifferentiated sex chromosomes for at least 56 million years in multiple species. We identified several independent species- or population-specific sex determination transitions, including a recent loss of a Y-chromosome. These findings highlight the diversity of evolutionary fates of master sex-determining genes and the importance of population demographic history in sex determination studies. We hypothesize that occasional sex reversals and genetic bottlenecks provide a non-adaptive explanation for sex determination transitions

Influence of the Amazon-Orinoco Discharge Interannual Variability on the Western Tropical Atlantic Salinity and Temperature

International audienceOver the last three decades, extreme floods have become increasingly frequent in the Amazon basin, affecting strongly the population and ecosystems of the area. However, the impact of these extreme events on the tropical Atlantic Ocean is still poorly known. In this study, we use a 1/4° coupled ocean-atmosphere model to assess the impact of the runoff interannual variability on the sea surface salinity and sea surface temperature of the area. Twin sensitivity experiments are performed, forced alternatively with interannually-varying and climatological river runoff. Composite fields for the highest floods and lowest floods are also compared. This combination of sensitivity tests and composite extremes allows to separate the effect of runoff interannual variability from the rest of the variability (typically driven by mixing, advection and precipitation). We show that the runoff interannual variability modulates the sea surface salinity of the Amazon plume with the same order of magnitude as the salinity variability driven by ocean dynamics and atmospheric forcing. However, due to vertical mixing, this oceanic imprint of the extreme floods is limited to a few months and a few hundred kilometers from the mouth. Years of extreme floods generally coincide with anomalous phases of the Atlantic Meridional Mode, which are associated with large-scale sea surface temperature anomalies over the tropical Atlantic Ocean. Our results did not reveal any significant modulation of these temperature anomalies by the runoff interannual variability, at any time of the year, questioning the relevance of a hydrological feedback on the tropical Atlantic sea surface temperature

How does the phytoplankton–light feedback affect the marine N₂O inventory?

The phytoplankton–light feedback (PLF) describes the interaction between phytoplankton biomass and the downwelling shortwave radiation entering the ocean. The PLF allows the simulation of differential heating across the ocean water column as a function of phytoplankton concentration. Only one third of the Earth system models contributing to the 6th phase of the Coupled Model Intercomparison Project (CMIP6) include a complete representation of the PLF. In other models, the PLF is either approximated by a prescribed climatology of chlorophyll or not represented at all. Consequences of an incomplete representation of the PLF on the modelled biogeochemical state have not yet been fully assessed and remain a source of multi-model uncertainty in future projection. Here, we evaluate within a coherent modelling framework how representations of the PLF of varying complexity impact ocean physics and ultimately marine production of nitrous oxide (N2O), a major greenhouse gas. We exploit global sensitivity simulations at 1∘ horizontal resolution over the last 2 decades (1999–2018), coupling ocean, sea ice and marine biogeochemistry. The representation of the PLF impacts ocean heat uptake and temperature of the first 300 m of the tropical ocean. Temperature anomalies due to an incomplete PLF representation drive perturbations of ocean stratification, dynamics and oxygen concentration. These perturbations translate into different projection pathways for N2O production depending on the choice of the PLF representation. The oxygen concentration in the North Pacific oxygen-minimum zone is overestimated in model runs with an incomplete representation of the PLF, which results in an underestimation of local N2O production. This leads to important regional differences of sea-to-air N2O fluxes: fluxes are enhanced by up to 24 % in the South Pacific and South Atlantic subtropical gyres but reduced by up to 12 % in oxygen-minimum zones of the Northern Hemisphere. Our results, based on a global ocean–biogeochemical model at CMIP6 state-of-the-art level, shed light on current uncertainties in modelled marine nitrous oxide budgets in climate models.</p

Seasonal modes of surface cooling in the Gulf of Guinea

A numerical simulation of the tropical Atlantic Ocean indicates that surface cooling in upwelling zones of the Gulf of Guinea is mostly due to vertical mixing. At the seasonal scale, the spatial structure and the time variability of the northern and southern branches of the South Equatorial Current (SEC), and of the Guinea Current, are correlated with the timing and distribution of turbulent heat fluxes in the Gulf of Guinea. Through modulation of the velocity shear at the subsurface, these surface currents control the vertical turbulent exchanges, bringing cold and nutrient-rich waters to the surface. This mechanism explains the seasonality and spatial distribution of surface chlorophyll concentrations better than the generally accepted hypothesis that thermocline movements control the nutrient flux. The position of the southern SEC explains why the cold tongue and high chlorophyll concentrations extend from the equator to 4 degrees S in the southeastern part of the basin

Persistent lagrangian transport patterns in the northwestern Gulf of Mexico

Persistent Lagrangian transport patterns at the ocean surface are revealed from climatological Lagrangian coherent structures (cLCSs) computed from daily climatological surface current velocities in the northwestern Gulf of Mexico (NWGoM). The climatological currents are computed from daily velocities produced by an 18-yr-long free-running submesoscale-permitting Nucleus for European Modelling of the Ocean (NEMO) simulation of the Gulf of Mexico. Despite the intense submesoscale variability produced by the model along the shelf break, which is found to be consistent with observations and previous studies, a persistent mesoscale attracting barrier between the NWGoM shelf and the deep ocean is effectively identified by a hook-like pattern associated with persistent strongly attracting cLCSs. Simulated tracer and satellite-tracked drifters originating over the shelf tend to be trapped there by the hook-like pattern as they spread cyclonically. Tracers and drifters originating beyond the shelf tend to be initially attracted to the hook-like pattern as they spread anticyclonically and eventually over the deep ocean. The findings have important implications for the mitigation of contaminant accidents such as oil spills

Waveguide amplifiers in rare-earth doped glasses : fabrication, characterisation [MATH] modelling

No abstract availabl

Beach adaptation to intraseasonal sea level changes

International audienceCoastal areas such as beaches with steep upper slope and flat low-tide terrace, are expected to be increasingly affected by sea level changes. Related impacts due to the paramount rise in sea level have been intensively investigated, but there is still little evidence of the impact of shorter timescales variations on the coast, particularly those induced by trapped coastal waves. Using the latest advances in video bathymetric estimation, daily observations over 3.5 years (February 2013 to June 2016) on Grand Popo Beach (West Africa) reveal that intraseasonal sea level variations impact the beach profile. The intraseasonal sea level variations are dominated by the propagation of wind forced coastal trapped waves with periods ranging 15-95 days. It is shown that the beach goes through a transient state with a deformation of the profile: an intraseasonal sea level rise leads to a 2 m erosion of the upper beach and a widening of the flat terrace at the lower beach. Although the underlying mechanism must be tested through beach profile modelling, this study highlights the active adaptation of the beach profile to variations in sea level