PCORnet's Collaborative Research Groups.

The Patient-Centered Outcomes Research Institute (PCORI) launched a multi-institutional "network of networks" in 2013 - Patient-Centered Clinical Research Network (PCORnet) - that is designed to conduct clinical research that is faster, less expensive, and more responsive to the information needs of patients and clinicians. To enhance cross-network and cross-institutional collaboration and catalyze the use of PCORnet, PCORI has supported formation of 11 Collaborative Research Groups focusing on specific disease types (e.g., cardiovascular health and cancer) or particular patient populations (e.g., pediatrics and health disparities). PCORnet's Collaborative Research Groups are establishing research priorities within these focus areas, establishing relationships with potential funders, and supporting development of specific research projects that will use PCORnet resources. PCORnet remains a complex, multilevel, and heterogeneous network that is still maturing and building a diverse portfolio of observational and interventional people-centered research; engaging with PCORnet can be daunting, particularly for outside investigators. We believe the Collaborative Research Groups are stimulating interest and helping investigators navigate the complexity, but only time will tell if these efforts will bear fruit in terms of funded multicenter PCORnet projects

Frizzled-8 integrates Wnt-11 and transforming growth factor-β signaling in prostate cancer

Wnt-11 promotes cancer cell migration and invasion independently of β-catenin but the receptors involved remain unknown. Here, we provide evidence that FZD8 is a major Wnt-11 receptor in prostate cancer that integrates Wnt-11 and TGF-β signals to promote EMT. FZD8 mRNA is upregulated in multiple prostate cancer datasets and in metastatic cancer cell lines in vitro and in vivo. Analysis of patient samples reveals increased levels of FZD8 in cancer, correlating with Wnt-11. FZD8 co-localizes and co-immunoprecipitates with Wnt-11 and potentiates Wnt-11 activation of ATF2-dependent transcription. FZD8 silencing reduces prostate cancer cell migration, invasion, three-dimensional (3D) organotypic cell growth, expression of EMT-related genes, and TGF-β/Smad-dependent signaling. Mechanistically, FZD8 forms a TGF-β-regulated complex with TGF-β receptors that is mediated by the extracellular domains of FZD8 and TGFBR1. Targeting FZD8 may therefore inhibit aberrant activation of both Wnt and TGF-β signals in prostate cancer

National Soils Database

End of project reportThe objectives of the National Soils Database project were fourfold. The first was to generate a national database of soil geochemistry to complete the work that commenced with a survey of the South East of Ireland carried out in 1995 and 1996 by Teagasc (McGrath and McCormack, 1999). Secondly, to produce point and interpolated spatial distribution maps of major, minor and trace elements and to interpret these with respect to underlying parent material, glacial geology, land use and possible anthropogenic effects. A third objective was to investigate the microbial community structure in a range of soil types to determine the relationship between soil microbiology and chemistry. The final objective was to establish a National Soils Archive

Application of open pore cellular foam for air breathing PEM fuel cell

This is an accepted manuscript of an article published by Elsevier in International Journal of Hydrogen Energy on 07/06/2017, available online: https://doi.org/10.1016/j.ijhydene.2017.05.114 The accepted version of the publication may differ from the final published version.Open Pore Cellular Foam (OPCF) has received increased attention for use in Proton Exchange Membrane (PEM) fuel cells as a flow plate due to some advantages offered by the material, including better gas flow, lower pressure drop and low electrical resistance. In the present study, a novel design for an air-breathing PEM (ABPEM) fuel cell, which allows air convection from the surrounding atmosphere, using OPCF as a flow distributor has been developed. The developed fuel cell has been compared with one that uses a normal serpentine flow plate, demonstrating better performance. A comparative analysis of the performance of an ABPEM and pressurised air PEM (PAPEM) fuel cell is conducted and poor water management behaviour was observed for the ABPEM design. Thereafter, a PTFE coating has been applied to the OPCF with contact angle and electrochemical polarisation tests conducted to assess the capability of the coating to enhance the hydrophobicity and corrosion protection of metallic OPCF in the PEM fuel cell environment. The results showed that the ABPEM fuel cell with PTFE coated OPCF had a better performance than that with uncoated OPCF. Finally, OPCF was employed to build an ABPEM fuel cell stack where the performance, advantages and limitations of this stack are discussed in this paper

Nutrient management planning on Irish dairy farms

End of Project ReportThe objective of the work undertaken was to investigate nutrient use on intensive dairy farms. A survey of 12 dairy farms was undertaken in 1997 to determine nutrient management practices. These were compared with current nutrient advice and recommended practices. Data recording was completed by the farmer and supplemented by regular farm visits to assist with and validate the process. The mean farm size was 64.8 ha with an average of 128 cows and an annual milk yield per cow of 5594 kg. The mean stocking rate was 2.58 Livestock Units/ha. Dairy cows accounted for highest proportion of the total livestock with most of the younger stock consisting of dairy replacements. Approximately 80% of soil P levels were greater than 6 mg/l while 67% of soils had soil K levels in excess of 100 mg/l. The mean soil P and K levels on the grazing and silage areas were 11 and 128 mg/l, 12 and 117 mg/l, respectively. The mean farm nutrient balance (inputs - outputs) established an annual surplus of N, P and K of 304, 18 and 53 kg/ha, respectively. The adoption of nutrient management plans instead of current practice would reduce N, P and K inputs on average by 44, 13 and 24 kg/ha, respectively. The use of the Teagasc revised P nutrient advice would further reduce the P input requirements by 2 kg/ha. On average the farms had 90% of the 16 week slurry storage capacity. Approximately 14, 42, 14 and 31% of the slurry was applied in spring, summer, autumn and winter, respectively. In all cases there was significant between farm variability. The soil P fertility on the survey farms is skewed towards index 3 and 4 when compared with the average for all samples received at Johnstown Castle. There is no agronomic advantage in terms of crop or animal production for soils to have P levels in excess 10 mg/l. This result indicates that P inputs to farms of this type can be reduced in many cases without prejudicing production potential. The nutrient balance conducted highlighted the extent of the nutrient surpluses and the between farm variability. The data suggest that there is not a serious nutrient surplus on the survey farms, which would require the use of additional off-farm land for slurry recycling, as obtains on pig and poultry farms. The study also indicates that although farm unit cost savings may be small in adopting nutrient management planning, overall farm savings may be significant. For example on the survey farms, savings of up to £2,000 can be achieved apart from the obvious positive environmental impact

Effect of an agri-environmental measure on nitrate leaching from a beef farming system in Ireland

peer-reviewedAgricultural nitrogen (N) management remains a key environmental challenge. Improving N management is a matter of urgency to reduce the serious ecological consequences of the reactive N. Nitrate (NO3−–N) leaching was measured under suckler beef production systems stocked at two intensities: (1) intensive, 210 kg organic N ha−1 with two cut silage harvests; and (2) rural environmental protection scheme (REPS), 170 kg organic N ha−1 with one cut silage harvest. Three replicate plots of each treatment were instrumented with ceramic cups (8 per plot), randomly placed within each plot at a depth of 1 m to collect soil solution for NO3−–N at 50 kPa suction to collecting vessels one week prior to sampling. Samples were taken on a total of 53 sampling dates over 3 winter drainage periods (2002/03, 2003/04 and 2004/05). Over the course of the experiment the mean annual soil solution NO3−–N concentration exceeded the MAC twice out of 15 means (5 treatments over 3 years). The REPS grazing and silage sub treatments had significantly lower mean annual soil solution total oxidized N (TON) concentrations than the respective intensive treatments in years 2 and 3. Annual total NO3−–N losses over the three years in intensive and REPS systems ranged from 55 to 71 and 15 to 20 kg N ha−1, respectively. Mean N surpluses in intensive and REPS systems were 210 and 95 kg ha−1, respectively with the corresponding mean N inputs of 272 and 124 kg N ha−1. The reduction in N inputs under the REPS system results in lower N leaching losses and contributed to a significant reduction in pressures on water quality

Composite mirror facets for ground based gamma ray astronomy

Composite mirrors for gamma-ray astronomy have been developed to fulfill the specifications required for the next generation of Cherenkov telescopes represented by CTA (Cherenkov Telescope Array). In addition to the basic requirements on focus and reflection efficiency, the mirrors have to be stiff, lightweight, durable and cost efficient. In this paper, the technology developed to produce such mirrors is described, as well as some tests that have been performed to validate them. It is shown that these mirrors comply with the needs of CTA, making them good candidates for use on a significant part of the array.Comment: 16 pages, 13 figures, accepted to be published on NIM

Physical and remineralization processes govern the cobalt distribution in the deep western Atlantic Ocean

International audienceThe distributions of the bio-essential trace element dissolved cobalt (DCo) and the apparent particulate Co (PCo) are presented along the GEOTRACES-A02 deep section from 64° N to 50° S in the western Atlantic Ocean (longest section of international GEOTRACES marine environment program). PCo was determined as the difference between total cobalt (T Co, unfiltered samples) and DCo. DCo concentrations ranged from 14.7pM to 94.3 pM, and PCo concentrations from undetectable values to 18.8 pM. The lowest DCo concentrations were observed in the subtropical domains, and the highest in the low-oxygenated Atlantic Central Waters (ACW), which appears to be the major reservoir of DCo in the western Atlantic. In the Antarctic Bottom Waters, the enrichment in DCo with aging of the water mass can be related to suspension and redissolution of bottom sediments a well as diffusion of DCo from abyssal sediments. Mixing and dilution of deep water masses, rather than scavenging of DCo onto settling particles, generated the meridional decrease of DCo along the southward large-scale circulation in the deep western Atlantic. Furthermore, the apparent scavenged profile of DCo observed in the deep waters likely resulted from the persistence of relatively high concentrations in intermediate waters and low DCo concentrations in underlaying bottom waters. We suggest that the 2010 Icelandic volcanic eruption could have been a source of DCo that could have been transported into the core of the Northeast Atlantic Deep Waters. At intermediate depths, the high concentrations of DCo recorded in the ACW linearly correlated with the apparent utilization of oxygen (AOU), indicating that remineralization of DCo could be significant (representing up to 37% of the DCo present). Furthermore, the preferential remineralization of phosphate (P) compared to Co in these low-oxygenated waters suggests a decoupling between the deep cycles of P and Co. The vertical diffusion of DCo from the ACW appears to be a significant source of DCo into the surface waters of the equatorial domain. Summarizing, the dilution due to mixing processes rather than scavenging of DCo and the above-mentioned remineralization could be the two major pathways controlling the cycling of DCo into the intermediate and deep western Atlanti