Fractional Entropy Based Active Contour Segmentation of Cell Nuclei in Actin-Tagged Confocal Microscopy Images

In the framework of cell structure characterization for predictive oncology, we propose in this paper an unsupervised statistical region based active contour approach integrating an original fractional entropy measure for single channel actin tagged fluorescence confocal microscopy image segmentation. Following description of statistical based active contour segmentation and the mathematical definition of the proposed fractional entropy descriptor, we demonstrate comparative segmentation results between the proposed approach and standard Shannon’s entropy obtained for nuclei segmentation. We show that the unsupervised proposed statistical based approach integrating the fractional entropy measure leads to very satisfactory segmentation of the cell nuclei from which shape characterization can be subsequently used for the therapy progress assessment

Statistical region based active contour using a fractional entropy descriptor: Application to nuclei cell segmentation in confocal microscopy images

We propose an unsupervised statistical region based active contour approach integrating an original fractional entropy measure for image segmentation with a particular application to single channel actin tagged fluorescence confocal microscopy image segmentation. Following description of statistical based active contour segmentation and the mathematical definition of the proposed fractional entropy descriptor, we demonstrate comparative segmentation results between the proposed approach and standard Shannon’s entropy on synthetic and natural images. We also show that the proposed unsupervised statistical based approach, integrating the fractional entropy measure, leads to very satisfactory segmentation of the cell nuclei from which shape characterization can be calculated

Evidence for Letter-Specific Position Coding Mechanisms

International audienceThe perceptual matching (same-different judgment) paradigm was used to investigate precision in position coding for strings of letters, digits, and symbols. Reference and target stimuli were 6 characters long and could be identical or differ either by transposing two characters or substituting two characters. The distance separating the two characters was manipulated such that they could either be contiguous, separated by one intervening character, or separated by two intervening characters. Effects of type of character and distance were measured in terms of the difference between the transposition and substitution conditions (transposition cost). Error rates revealed that transposition costs were greater for letters than for digits, which in turn were greater than for symbols. Furthermore, letter stimuli showed a gradual decrease in transposition cost as the distance between the letters increased, whereas the only significant difference for digit and symbol stimuli arose between contiguous and non-contiguous changes, with no effect of distance on the non-contiguous changes. The results are taken as further evidence for letter-specific position coding mechanisms

Neural correlates of phonological, orthographic and semantic reading processing in dyslexia

Developmental dyslexia is one of the most prevalent learning disabilities, thought to be associated with dysfunction in the neural systems underlying typical reading acquisition. Neuroimaging research has shown that readers with dyslexia exhibit regional hypoactivation in left hemisphere reading nodes, relative to control counterparts. This evidence, however, comes from studies that have focused only on isolated aspects of reading. The present study aims to characterize left hemisphere regional hypoactivation in readers with dyslexia for the main processes involved in successful reading: phonological, orthographic and semantic. Forty-one participants performed a demanding reading task during MRI scanning. Results showed that readers with dyslexia exhibited hypoactivation associated with phonological processing in parietal regions; with orthographic processing in parietal regions, Broca's area, ventral occipitotemporal cortex and thalamus; and with semantic processing in angular gyrus and hippocampus. Stronger functional connectivity was observed for readers with dyslexia than for control readers 1) between the thalamus and the inferior parietal cortex/ventral occipitotemporal cortex during pseudoword reading; and, 2) between the hippocampus and the pars opercularis during word reading. These findings constitute the strongest evidence to date for the interplay between regional hypoactivation and functional connectivity in the main processes supporting reading in dyslexia. Keywords: Dyslexia, Reading, Hypoactivation, Functional connectivity, Thalamus, Hippocampu

Acetylcholinesterase inhibitory activity of oxazole derivatives

Comunicação oral sob a forma de painelAlzheimer’s disease (AD) is the most common form of dementia among persons over 65 years of age. It is a brain neurodegenerative disorder characterised by loss of memory and cognition. Current treatment is symptomatic, with the major therapeutic strategy based on the “cholinergic hypothesis”, specifically acetylcholinesterase (AChE) inhibition. Tacrine (THA) was the first and one of the few drugs approved in the last decade for the treatment of AD. However, due to the important adverse effects, such as hepatotoxicity, it is no longer widely used. Therefore, more potent and less aggressive THA analogues are necessary. This prompted us to evaluate the AChE inhibitory activity of new oxazole derivatives (compounds 1-5), presenting a pyridine ring (compounds 2,3) or a benzene ring (compounds 4,5) in the molecule (1). The biological activity of the compounds was evaluated by measuring the AChE inhibitory activity by an adaptation of the method reported by Ellman et al (2). The reaction rates were compared and the percent of inhibition by the test compounds was calculated. Assays were performed in quadruplicate in at least two independent experiments, and THA was used as a reference compound. At the maximum soluble concentrations, compounds 1 and 2 inhibited AChE activity by nearly 50%, while the inhibition by the derivative 3 was only around 30%. In contrast, the oxazolo-derivatives 4 and 5 were devoid of any inhibitory activity, which we can speculate to be due to the absence of the N atom in the benzene ring in these compounds. Collectively, these preliminary findings point to a potential interest of precursor 1 and THA-derivative 2 for AD therapeutics, although structural modifications are needed to improve the solubility of the compounds, which is an essential step to enhance their activity. References: 1. Carreiras MC, Eleutério A, Marco-Contelles J, unpublished results. 2. Ellman, G. L. et al. Biochem. Pharmacol. 1961; 7: 88-95.Financial support: Centro de Estudos de Ciências Farmacêuticas, Centro de Patogénese Molecular – UBMBE and Instituto de Química Orgánica General – CSIC

Multispectral and hyperspectral remote sensing as a source of knowledge in the Portuguese sector of the Iberian Pyrite Belt

ABSTRACT: Remote sensing is an invaluable tool to increase geological and mining knowledge, due to its screening view and variable discrimination and identification capabilities of the target materials. In this study an overview of remote sensing research developed and ongoing within the Portuguese sector of the Iberian Pyrite Belt (PSIPB) since 2000 is given. Multispectral and hyperspectral datasets were processed using hybrid methods, related both to general and detailed characterization, to: 1) support geological, mineral and hydrothermal mapping, 2) generate products derived from multivariate analysis and band ratios, 3) enhance correlation with radiometric data, 4) provide elements for environmental assessment concerning mining activity, 5) map Acid Mine Drainage (AMD) based on spectral field signatures, 6) quantify AMD based on high correlation mineralogical mapping, and 7) monitor AMD. The results highlight the importance of the quantitative digital support given by remote sensing tools within the Portuguese Sector of the Iberian Pyrite Belt (PSIPB), ruled by georesource exploitation in different stages of the Mine Lyfe Cycle.RESUMO: A deteção remota é uma ferramenta valiosa para aumentar o conhecimento geológico e mineiro, devido à visão sinótica e à capacidade variável de discriminação e identificação dos materiais-alvo. Neste trabalho dá-se uma visão geral da investigação através dos trabalhos de deteção remota desenvolvidos e em curso no Setor Português da Faixa Piritosa Ibérica (SPFPI) desde 2000. Os dados multiespectrais e hiperespectrais foram processados usando métodos híbridos quer para a sua caracterização geral quer detalhada para: 1) apoiar a cartografia geológica, de mineralizações e sistemas hidrotermais, 2) gerar produtos de análise multivariada e rácios de bandas, 3) melhorar a correlação com dados radiométricos 4) fornecer elementos para avaliação ambiental em áreas mineiras, 5) cartografar a drenagem ácida de mina (DAM) com assinaturas espectrais de campo, 6) quantificar a DAM através de cartografia mineralógica de alta correlação, e 7) monitorizar a DAM. Destaca-se a importância do suporte digital quantitativo dado por ferramentas de deteção remota no SPFPI, regido pela exploração de georrecursos em diferentes fases do Ciclo de Vida das Minas

Group-level cortical functional connectivity patterns using fNIRS: assessing the effect of bilingualism in young infants

Epub 2021 Jun 12.Significance: Early monolingual versus bilingual experience induces adaptations in the development of linguistic and cognitive processes, and it modulates functional activation patterns during the first months of life. Resting-state functional connectivity (RSFC) is a convenient approach to study the functional organization of the infant brain. RSFC can be measured in infants during natural sleep, and it allows to simultaneously investigate various functional systems. Adaptations have been observed in RSFC due to a lifelong bilingual experience. Investigating whether bilingualism- induced adaptations in RSFC begin to emerge early in development has important implications for our understanding of how the infant brain’s organization can be shaped by early environmental factors. Aims: We attempt to describe RSFC using functional near-infrared spectroscopy (fNIRS) and to examine whether it adapts to early monolingual versus bilingual environments. We also present an fNIRS data preprocessing and analysis pipeline that can be used to reliably characterize RSFC in development and to reduce false positives and flawed results interpretations. Methods: We measured spontaneous hemodynamic brain activity in a large cohort (N ¼ 99) of 4-month-old monolingual and bilingual infants using fNIRS. We implemented group-level approaches based on independent component analysis to examine RSFC, while providing proper control for physiological confounds and multiple comparisons. Results: At the group level, we describe the functional organization of the 4-month-old infant brain in large-scale cortical networks. Unbiased group-level comparisons revealed no differences in RSFC between monolingual and bilingual infants at this age. Conclusions: High-quality fNIRS data provide a means to reliably describe RSFC patterns in the infant brain. The proposed group-level RSFC analyses allow to assess differences in RSFC across experimental conditions. An effect of early bilingual experience in RSFC was not observed, suggesting that adaptations might only emerge during explicit linguistic tasks, or at a later point in development.The authors would like to thank all the parents and infants who generously participate in our studies. The authors also would like to thank Elena Aguirrebengoa for her assistance on recruiting and testing participants and Enrico Amico for discussion regarding the connICA approach. This work was supported by the Basque Government (Nos. PRE_2018_2_0154, PIBA_2019_ 104, and BERC 2018-2021); the Spanish Ministry of Economy and Competitiveness (Nos. RYC-2017-21845, PID2019-105520GB-100, and PSI2014-5452-P); the Natural Sciences and Engineering Research Council of Canada (Nos. 506948 and 506993); and the Engineering and Physical Sciences Research Council (Nos. EP/N025946/1 and EP/509577/1)

Design, synthesis, molecular modelling and in vitro screening of monoamine oxidase inhibitory activities of novel quinazolyl hydrazine derivatives

Funding: Deanship of Scientific Research at Taibah University, Al-Madinah Al-Munawarah, Saudi Arabia (project # 7101).A new series of N'-substituted benzylidene-2-(4-oxo-2-phenyl-1,4-dihydroquinazolin-3(2H)-yl)acetohydrazide (5a-5h) has been synthesized, characterized by FT-IR, NMR spectroscopy and mass spectrometry and tested against human monoamine oxidase (MAO) A and B. Only (3-methoxy-4-hydroxy)benzoyl substituted compounds gave submicromolar inhibition of MAO-A and MAO-B. Changing the phenyl substituent to methyl on the unsaturated quinazoline ring (12a-12d) decreased inhibition but a less flexible linker (14a-14d) resulted in selective micromolar inhibition of hMAO B providing insight for ongoing design.Publisher PDFPeer reviewe

Deteção remota multiespectral e hiperespetral como fonte de conhecimento no sector português da Faixa Piritosa Ibérica

ABSTRACT: Remote sensing is an invaluable tool to increase geological and mining knowledge, due to its screening view and variable discrimination and identification capabilities of the target materials. In this study an overview of remote sensing research developed and ongoing within the Portuguese sector of the Iberian Pyrite Belt (PSIPB) since 2000 is given. Multispectral and hyperspectral datasets were processed using hybrid methods, related both to general and detailed characterization, to: 1) support geological, mineral and hydrothermal mapping, 2) generate products derived from multivariate analysis and band ratios, 3) enhance correlation with radiometric data, 4) provide elements for environmental assessment concerning mining activity, 5) map Acid Mine Drainage (AMD) based on spectral field signatures, 6) quantify AMD based on high correlation mineralogical mapping, and 7) monitor AMD. The results highlight the importance of the quantitative digital support given by remote sensing tools within the Portuguese Sector of the Iberian Pyrite Belt (PSIPB), ruled by georesource exploitation in different stages of the Mine Lyfe Cycle.RESUMO: A deteção remota é uma ferramenta valiosa para aumentar o conhecimento geológico e mineiro, devido à visão sinótica e à capacidade variável de discriminação e identificação dos materiais-alvo. Neste trabalho dá-se uma visão geral da investigação através dos trabalhos de deteção remota desenvolvidos e em curso no Setor Português da Faixa Piritosa Ibérica (SPFPI) desde 2000. Os dados multiespectrais e hiperespectrais foram processados usando métodos híbridos quer para a sua caracterização geral quer detalhada para: 1) apoiar a cartografia geológica, de mineralizações e sistemas hidrotermais, 2) gerar produtos de análise multivariada e rácios de bandas, 3) melhorar a correlação com dados radiométricos 4) fornecer elementos para avaliação ambiental em áreas mineiras, 5) cartografar a drenagem ácida de mina (DAM) com assinaturas espectrais de campo, 6) quantificar a DAM através de cartografia mineralógica de alta correlação, e 7) monitorizar a DAM. Destaca-se a importância do suporte digital quantitativo dado por ferramentas de deteção remota no SPFPI, regido pela exploração de georrecursos em diferentes fases do Ciclo de Vida das Minas.info:eu-repo/semantics/publishedVersio