Microsporidia-nematode associations in methane seeps reveal basal fungal parasitism in the deep sea

The deep sea is Earth's largest habitat but little is known about the nature of deep-sea parasitism. In contrast to a few characterized cases of bacterial and protistan parasites, the existence and biological significance of deep-sea parasitic fungi is yet to be understood. Here we report the discovery of a fungus-related parasitic microsporidium, Nematocenator marisprofundi n. gen. n. sp. that infects benthic nematodes at methane seeps on the Pacific Ocean floor. This infection is species-specific and has been temporally and spatially stable over 2 years of sampling, indicating an ecologically consistent host-parasite interaction. A high distribution of spores in the reproductive tracts of infected males and females and their absence from host nematodes' intestines suggests a sexual transmission strategy in contrast to the fecal-oral transmission of most microsporidia. N. marisprofundi targets the host's body wall muscles causing cell lysis, and in severe infection even muscle filament degradation. Phylogenetic analyses placed N. marisprofundi in a novel and basal clade not closely related to any described microsporidia clade, suggesting either that microsporidia-nematode parasitism occurred early in microsporidia evolution or that host specialization occurred late in an ancient deep-sea microsporidian lineage. Our findings reveal that methane seeps support complex ecosystems involving interkingdom interactions between bacteria, nematodes, and parasitic fungi and that microsporidia parasitism exists also in the deep-sea biosphere

Short-term CO\u3csub\u3e2\u3c/sub\u3e exposure and temperature rise effects on metazoan meiofauna and free-living nematodes in sandy and muddy sediments: Results from a flume experiment

© 2017 Elsevier B.V. Global concern over increasing CO2 emissions, and the resultant CO2 driven temperature rises and changes in seawater chemistry, necessitates the advancement of understanding into how these changes will affect marine life now and in the future. Here we report on an experimental investigation into the effects of increased CO2 concentration and elevated temperature on sedimentary meiofaunal communities. Cohesive (muddy) and non-cohesive (sandy) sediments were collected from the Eden Estuary in St. Andrews, Scotland, UK, placed within a flume setup and exposed to 2 levels of CO2 concentration (380 and 750 ppmv, current at the time of the experiment, and predicted CO2 concentration by 2100, respectively) and 2 temperature levels (12 °C and 16 °C, current in-situ and predicted temperature by 2100, respectively). We investigated the metazoan meiofauna and nematode communities before and after 28 days of exposure under these experimental conditions. The most determinative factor for abundance, diversity and community structure of meiofauna and nematodes was sediment type: on all levels, communities were significantly different between sand and mud sediments which agrees with what is generally known about the influence of sediment structure on meiofaunal organisms. Few CO2 and temperature effects were observed, suggesting that meiofauna and nematodes are generally much less responsive than, for instance, microbial communities and macrofauna to these environmental changes in estuarine environments, where organisms are naturally exposed to a fluctuating environment. This was corroborated by the observed effects related to the different seasons in which the samples were taken from the field to run the experiment. After 28 days, meiofauna and nematode communities in muddy sediments showed a greater response to increased CO2 concentration and temperature rise than in sandy sediments. However, further study is needed to investigate the underlying mechanisms and meiofauna species-specific resilience and responses to ocean acidification and warming, and their interactions with other biota, to understand what such changes may mean for meiofauna communities and the ecosystem processes and functions they contribute to

Integrating ocean observations across body‐size classes to deliver benthic invertebrate abundance and distribution information

Invertebrate animals living at the seafloor make up a prominent component of life globally, spanning 10 orders of magnitude in body size over 71% of Earth's surface. However, integrating information across sizes and sampling methodologies has limited our understanding of the influence of natural variation, climate change and human activity. Here, we outline maturing practices that can underpin both the feasibility and impact of establishing Benthic Invertebrate Abundance and Distribution as a Global Ocean Observing System—Essential Ocean Variable, including: (1) quantifying individual body size, (2) identifying the well-quantified portions of sampled body-size spectra, (3) taking advantage of (semi-)automated information processing, (4) application of metadata standards such as Darwin Core, and (5) making data available through internationally recognized access points. These practices enable broader-scale analysis supporting research and sustainable development, such as assessments of indicator taxa, biodiversity, biomass, and the modeling of carbon stocks and flows that are contiguous over time and space

Short-term CO₂ exposure and temperature rise effects on metazoan meiofauna and free-living nematodes in sandy and muddy sediments: Results from a flume experiment

Global concern over increasing CO2 emissions, and the resultant CO2 driven temperature rises and changes in seawater chemistry, necessitates the advancement of understanding into how these changes will affect marine life now and in the future. Here we report on an experimental investigation into the effects of increased CO2 concentration and elevated temperature on sedimentary meiofaunal communities. Cohesive (muddy) and non-cohesive (sandy) sediments were collected from the Eden Estuary in St. Andrews, Scotland, UK, placed within a flume setup and exposed to 2 levels of CO2 concentration (380 and 750 ppmv, current at the time of the experiment, and predicted CO2 concentration by 2100, respectively) and 2 temperature levels (12 °C and 16 °C, current in-situ and predicted temperature by 2100, respectively). We investigated the metazoan meiofauna and nematode communities before and after 28 days of exposure under these experimental conditions. The most determinative factor for abundance, diversity and community structure of meiofauna and nematodes was sediment type: on all levels, communities were significantly different between sand and mud sediments which agrees with what is generally known about the influence of sediment structure on meiofaunal organisms. Few CO2 and temperature effects were observed, suggesting that meiofauna and nematodes are generally much less responsive than, for instance, microbial communities and macrofauna to these environmental changes in estuarine environments, where organisms are naturally exposed to a fluctuating environment. This was corroborated by the observed effects related to the different seasons in which the samples were taken from the field to run the experiment. After 28 days, meiofauna and nematode communities in muddy sediments showed a greater response to increased CO2 concentration and temperature rise than in sandy sediments. However, further study is needed to investigate the underlying mechanisms and meiofauna species-specific resilience and responses to ocean acidification and warming, and their interactions with other biota, to understand what such changes may mean for meiofauna communities and the ecosystem processes and functions they contribute to

Characteristics of meiofauna in extreme marine ecosystems: a review

Extreme marine environments cover more than 50% of the Earth’s surface and offer many opportunities for investigating the biological responses and adaptations of organisms to stressful life conditions. Extreme marine environments are sometimes associated with ephemeral and unstable ecosystems, but can host abundant, often endemic and well-adapted meiofaunal species. In this review, we present an integrated view of the biodiversity, ecology and physiological responses of marine meiofauna inhabiting several extreme marine environments (mangroves, submarine caves, Polar ecosystems, hypersaline areas, hypoxic/anoxic environments, hydrothermal vents, cold seeps, carcasses/sunken woods, deep-sea canyons, deep hypersaline anoxic basins [DHABs] and hadal zones). Foraminiferans, nematodes and copepods are abundant in almost all of these habitats and are dominant in deep-sea ecosystems. The presence and dominance of some other taxa that are normally less common may be typical of certain extreme conditions. Kinorhynchs are particularly well adapted to cold seeps and other environments that experience drastic changes in salinity, rotifers are well represented in polar ecosystems and loriciferans seem to be the only metazoan able to survive multiple stressors in DHABs. As well as natural processes, human activities may generate stressful conditions, including deoxygenation, acidification and rises in temperature. The behaviour and physiology of different meiofaunal taxa, such as some foraminiferans, nematode and copepod species, can provide vital information on how organisms may respond to these challenges and can provide a warning signal of anthropogenic impacts. From an evolutionary perspective, the discovery of new meiofauna taxa from extreme environments very often sheds light on phylogenetic relationships, while understanding how meiofaunal organisms are able to survive or even flourish in these conditions can explain evolutionary pathways. Finally, there are multiple potential economic benefits to be gained from ecological, biological, physiological and evolutionary studies of meiofauna in extreme environments. Despite all the advantages offered by meiofauna studies from extreme environments, there is still an urgent need to foster meiofauna research in terms of composition, ecology, biology and physiology focusing on extreme environments

Meiofauna in the Gollum Channels and the Whittard Canyon, Celtic Margin—How Local Environmental Conditions Shape Nematode Structure and Function

The Gollum Channels and Whittard Canyon (NE Atlantic) are two areas that receive high input of organic matter and phytodetritus from euphotic layers, but they are typified by different trophic and hydrodynamic conditions. Sediment biogeochemistry was analysed in conjunction with structure and diversity of the nematode community and differences were tested between study areas, water depths (700 m vs 1000 m), stations, and sediment layers. The Gollum Channels and Whittard Canyon harboured high meiofauna abundances (1054–1426 ind. 10 cm−2) and high nematode diversity (total of 181 genera). Next to enhanced meiofauna abundance and nematode biomass, there were signs of high levels of organic matter deposition leading to reduced sedimentary conditions, which in turn structured the nematode community. Striking in this respect was the presence of large numbers of ‘chemosynthetic’ Astomonema nematodes (Astomonema southwardorum, Order Monhysterida, Family Siphonolaimidae). This genus lacks a mouth, buccal cavity and pharynx and possesses a rudimentary gut containing internal, symbiotic prokaryotes which have been recognised as sulphur-oxidising bacteria. Dominance of Astomonema may indicate the presence of reduced environments in the study areas, which is partially confirmed by the local biogeochemical environment. The nematode communities were mostly affected by sediment layer differences and concomitant trophic conditions rather than other spatial gradients related to study area, water depth or station differences, pointing to small-scale heterogeneity as the main source of variation in nematode structure and function. Furthermore, the positive relation between nematode standing stocks, and quantity and quality of the organic matter was stronger when hydrodynamic disturbance was greater. Analogically, this study also suggests that structural diversity can be positively correlated with trophic conditions and that this relation is tighter when hydrodynamic disturbance is greater

Dried blood spot UHPLC-MS/MS analysis of oseltamivir and oseltamivircarboxylate—a validated assay for the clinic

The neuraminidase inhibitor oseltamivir (Tamiflu®) is currently the first-line therapy for patients with influenza virus infection. Common analysis of the prodrug and its active metabolite oseltamivircarboxylate is determined via extraction from plasma. Compared with these assays, dried blood spot (DBS) analysis provides several advantages, including a minimum sample volume required for the measurement of drugs in whole blood. Samples can easily be obtained via a simple, non-invasive finger or heel prick. Mainly, these characteristics make DBS an ideal tool for pediatrics and to measure multiple time points such as those needed in therapeutic drug monitoring or pharmacokinetic studies. Additionally, DBS sample preparation, stability, and storage are usually most convenient. In the present work, we developed and fully validated a DBS assay for the simultaneous determination of oseltamivir and oseltamivircarboxylate concentrations in human whole blood. We demonstrate the simplicity of DBS sample preparation, and a fast, accurate and reproducible analysis using ultra high-performance liquid chromatography coupled to a triple quadrupole mass spectrometer. A thorough validation on the basis of the most recent FDA guidelines for bioanalytical method validation showed that the method is selective, precise, and accurate (≤15% RSD), and sensitive over the relevant clinical range of 5–1,500 ng/mL for oseltamivir and 20–1,500 ng/mL for the oseltamivircarboxylate metabolite. As a proof of concept, oseltamivir and oseltamivircarboxylate levels were determined in DBS obtained from healthy volunteers who received a single oral dose of Tamiflu®