Fluvial nutrient dynamics in a humanized landscape. Insights from a hierarchical perspective

Enviem correu als editors per informar-nos sobre la política de drets d'autorGlobal change driven by human activity is overimposed on the hierarchical structure of fluvial ecosystems, causing a myriad of effects on their physical template and hydrology as well as on the quantity and quality of the resources for stream biota. Global change operates at all scales within this hierarchy, but its effects on the ecology of fluvial ecosystems at any particular scale may be exacerbated or overridden by concomitant effects occurring at other scales. The resulting effects can have major ecological implications on both ecosystem services (namely, biogeochemical processes associated to energy and matter flow) and biodiversity (namely, community structure), which currently are issues of central concern in environmental management. In this paper we focus on a particular ecological attribute of fluvial ecosystems, the capacity to process and retain nutrients, and examine how physical and chemical alterations caused by human activities, occurring at different scales, may interact to affect this capacity. We illustrate these effects based on existing knowledge and highlight the key changes at different scales which can be susceptible of major effects.El cambio global derivado de la actividad humana se sobrepone a la estructura jerárquica de los ecosistemas fluviales, causando múltiples efectos sobre la estructura física, la hidrología, y la cantidad y calidad de los recursos para los organismos de los ríos. El cambio global opera sobre todos los niveles de esta jerarquía estructural, pero sus efectos sobre la ecología de los ecosistemas fluviales en cada nivel pueden ser exacerbados o anulados por efectos que ocurren a otros niveles. Los efectos resultantes tienen implicaciones ecológicas tanto en relación con los servicios de los ecosistemas (por ejemplo, los procesos biogeoquímicos asociados al flujo de energía y materia) y la biodiversidad (por ejemplo, la estructura biótica de las comunidades). Actualmente, estos temas son una preocupación central en la gestión ambiental. En este artículo nos centramos en un atributo ecológico concreto de los ecosistemas fluviales, la capacidad de procesar y retener nutrientes, y examinamos cómo alteraciones físicas y químicas causadas por la actividad humana, que tienen lugar a diferentes niveles espaciales, pueden incidir en esta capacidad biogeoquímica. Estos efectos son ilustrados en base al conocimiento existente y enfatizan los cambios clave a diferentes niveles que pueden ser susceptibles de estos efectos

Simulations of a single membrane between two walls using a Monte Carlo method

Quantitative theory of interbilayer interactions is essential to interpret x-ray scattering data and to elucidate these interactions for biologically relevant systems. For this purpose Monte Carlo simulations have been performed to obtain pressure P and positional fluctuations sigma. A new method, called Fourier Monte-Carlo (FMC), that is based on a Fourier representation of the displacement field, is developed and its superiority over the standard method is demonstrated. The FMC method is applied to simulating a single membrane between two hard walls, which models a stack of lipid bilayer membranes with non-harmonic interactions. Finite size scaling is demonstrated and used to obtain accurate values for P and sigma in the limit of a large continuous membrane. The results are compared with perturbation theory approximations, and numerical differences are found in the non-harmonic case. Therefore, the FMC method, rather than the approximations, should be used for establishing the connection between model potentials and observable quantities, as well as for pure modeling purposes.Comment: 10 pages, 10 figure

Coulombian Disorder in Periodic Systems

We study the effect of unscreened charged impurities on periodic systems. We show that the long wavelength component of the disorder becomes long ranged and dominates static correlation functions. On the other hand, because of the statistical tilt symmetry, dynamical properties such as pinning remain unaffected. As a concrete example, we focus on the effect of Coulombian disorder generated by charged impurities, on 3D charge density waves with non local elasticity. We calculate the x-ray intensity and find that it is identical to the one produced by thermal fluctuations in a disorder-free smectic-A. We discuss the consequences of these results for experiments.Comment: 11 pages, 3 figures, revtex

Integrated environmental assessment of nutrient emissions in a Mediterranean catchment : a case study in la Tordera, Catalonia /

Descripció del recurs: el 11 juliol 2013Hoy en día, los ríos de regiones principalmente desarrolladas presentan un exceso de las emisiones de nutrientes debido al crecimiento de las actividades humanas en sus cuencas. Esto conlleva un estrés ecológico significativo. El aumento de las emisiones de nitrógeno (N) y fósforo (P) se debe principalmente al crecimiento económico, tecnológico y de la población entre otros. Para controlar estas emisiones, se están produciendo cambios legislativos acompañados de nuevas actitudes sociales. Un ejemplo en Europa, es la Directiva Marco del Agua (DMA), cuya implementación requiere de la realización de una Evaluación Ambiental Integrada (EAI) que permita ampliar el conocimiento para una mejor gestión de las fuentes de los nutrientes (N y P). La EAI resulta crucial para la gestión sostenible de los recursos hidrológicos y para mantener la calidad ecológica de los ecosistemas especialmente vulnerables, como son, en este caso, los de las zonas Mediterráneas.Rivers, particularly in developed regions, are under significant ecological stress as a consequence of the increasing development of human activities in their catchments. This is especially reflected in excess nitrogen (N) and phosphorus (P) emissions, which are the product of complex dynamic systems influenced by demographic, socioeconomic and technological factors among others. This situation has been addressed in Europe through specific legislation such as the European Water Framework Directive (WFD). Its application requires conducting an Integrated Environmental Assessment (IEA) for the management of nutrients in river basins. In Mediterranean regions, where the aquatic ecosystems are particularly vulnerable, an IEA is essential for the sustainable management of hydrological resources and to maintain the ecological quality of the ecosystem

Protein intake and bone mineral density: Cross-sectional relationship and longitudinal effects in older adults

Background: There are several mechanisms via which increased protein intake might maintain or improve bone mineral density (BMD), but current evidence for an association or effect is inconclusive. The objectives of this study were to investigate the association between dietary protein intake (total, plant and animal) with BMD (spine and total body) and the effects of protein supplementation on BMD. Methods: Individual data from four trials that included either (pre-)frail, undernourished or healthy older adults (aged ≥65 years) were combined. Dietary intake was assessed with food records (2, 3 or 7 days) and BMD with dual-energy X-ray absorptiometry (DXA). Associations and effects were assessed by adjusted linear mixed models. Results: A total of 1570 participants [57% women, median (inter-quartile range): age 71 (68–75) years] for which at least total protein intake and total body BMD were known were included in cross-sectional analyses. In fully adjusted models, total protein intake was associated with higher total body and spine BMD [beta (95% confidence interval): 0.0011 (0.0006–0.0015) and 0.0015 (0.0007–0.0023) g/cm2, respectively]. Animal protein intake was associated with higher total body and spine BMD as well [0.0011 (0.0007–0.0016) and 0.0017 (0.0010–0.0024) g/cm2, respectively]. Plant protein intake was associated with a lower total body and spine BMD [−0.0010 (−0.0020 to −0.0001) and −0.0019 (−0.0034 to −0.0004) g/cm2, respectively]. Associations were similar between sexes. Participants with a high ratio of animal to plant protein intake had higher BMD. In participants with an adequate calcium intake and sufficient serum 25(OH)D concentrations, the association between total protein intake with total body and spine BMD became stronger. Likewise, the association between animal protein intake with total body BMD was stronger. In the longitudinal analyses, 340 participants [58% women, median (inter-quartile range): age 75 (70–81) years] were included. Interventions of 12 or 24 weeks with protein supplementation or protein supplementation combined with resistance exercise did not lead to significant improvements in BMD. Conclusions: An association between total and animal protein intake with higher BMD was found. In contrast, plant protein intake was associated with lower BMD. Research is warranted to further investigate the added value of dietary protein alongside calcium and vitamin D for BMD improvement, especially in osteopenic or osteoporotic individuals. Moreover, more research on the impact of a plant-based diet on bone health is needed

Gold/Silica biochips: applications to Surface Plasmon Resonance and fluorescence quenching

We report Gold/Silica biochips for low cost biosensor devices. Firstly, the study of biochemical interactions on silica by means of Surface Plasmon Resonance (SPR) is presented. Secondly, Gold/Silica biochips are employed to reduce the strong quenching that occurs when a fluorophore is close to the gold surface. Furthermore, the control of the Silica-like thickness allows optimizing the distance between the metallic surface and the fluorophore in order to enhance the fluorescent signal. These results represent the first steps towards highly sensitive, specific and low cost biosensors based, for example, on Surface Plasmon Coupled Emission (SPCE) techniques

Cyclic stretch increases splicing noise rate in cultured human fibroblasts

BACKGROUND: Mechanical forces are known to alter the expression of genes, but it has so far not been reported whether they may influence the fidelity of nucleus-based processes. One experimental approach permitting to address this question is the application of cyclic stretch to cultured human fibroblasts. As a marker for the precision of nucleus-based processes, the number of errors that occur during co-transcriptional splicing can then be measured. This so-called splicing noise is found at low frequency in pre-mRNA splicing. FINDINGS: The amount of splicing noise was measured by RT-qPCR of seven exon skips from the test genes AATF, MAP3K11, NF1, PCGF2, POLR2A and RABAC1. In cells treated by altered uniaxial cyclic stretching for 18 h, a uniform and significant increase of splicing noise was found for all detectable exon skips. CONCLUSION: Our data demonstrate that application of cyclic stretch to cultured fibroblasts correlates with a reduced transcriptional fidelity caused by increasing splicing noise

Comparative transcriptome profiling of amyloid precursor protein family members in the adult cortex

<p>Abstract</p> <p>Background</p> <p>The β-amyloid precursor protein (APP) and the related β-amyloid precursor-like proteins (APLPs) undergo complex proteolytic processing giving rise to several fragments. Whereas it is well established that Aβ accumulation is a central trigger for Alzheimer's disease, the physiological role of APP family members and their diverse proteolytic products is still largely unknown. The secreted APPsα ectodomain has been shown to be involved in neuroprotection and synaptic plasticity. The γ-secretase-generated APP intracellular domain (AICD) functions as a transcriptional regulator in heterologous reporter assays although its role for endogenous gene regulation has remained controversial.</p> <p>Results</p> <p>To gain further insight into the molecular changes associated with knockout phenotypes and to elucidate the physiological functions of APP family members including their proposed role as transcriptional regulators, we performed DNA microarray transcriptome profiling of prefrontal cortex of adult wild-type (WT), APP knockout (APP^-/-), APLP2 knockout (APLP2^-/-) and APPsα knockin mice (APP^α/α) expressing solely the secreted APPsα ectodomain. Biological pathways affected by the lack of APP family members included neurogenesis, transcription, and kinase activity. Comparative analysis of transcriptome changes between mutant and wild-type mice, followed by qPCR validation, identified co-regulated gene sets. Interestingly, these included heat shock proteins and plasticity-related genes that were both down-regulated in knockout cortices. In contrast, we failed to detect significant differences in expression of previously proposed AICD target genes including <it>Bace1</it>, <it>Kai1</it>, <it>Gsk3b</it>, <it>p53</it>, <it>Tip60</it>, and <it>Vglut2</it>. Only <it>Egfr </it>was slightly up-regulated in APLP2^-/-mice. Comparison of APP^-/-and APP^α/αwith wild-type mice revealed a high proportion of co-regulated genes indicating an important role of the C-terminus for cellular signaling. Finally, comparison of APLP2^-/-on different genetic backgrounds revealed that background-related transcriptome changes may dominate over changes due to the knockout of a single gene.</p> <p>Conclusion</p> <p>Shared transcriptome profiles corroborated closely related physiological functions of APP family members in the adult central nervous system. As expression of proposed AICD target genes was not altered in adult cortex, this may indicate that these genes are not affected by lack of APP under resting conditions or only in a small subset of cells.</p

Nr4a1-eGFP Is a Marker of Striosome-Matrix Architecture, Development and Activity in the Extended Striatum

Transgenic mice expressing eGFP under population specific promoters are widely used in neuroscience to identify specific subsets of neurons in situ and as sensors of neuronal activity in vivo. Mice expressing eGFP from a bacterial artificial chromosome under the Nr4a1 promoter have high expression within the basal ganglia, particularly within the striosome compartments and striatal-like regions of the extended amygdala (bed nucleus of the stria terminalis, striatal fundus, central amygdaloid nucleus and intercalated cells). Grossly, eGFP expression is inverse to the matrix marker calbindin 28K and overlaps with mu-opioid receptor immunoreactivity in the striatum. This pattern of expression is similar to Drd1, but not Drd2, dopamine receptor driven eGFP expression in structures targeted by medium spiny neuron afferents. Striosomal expression is strong developmentally where Nr4a1-eGFP expression overlaps with Drd1, TrkB, tyrosine hydroxylase and phospho-ERK, but not phospho-CREB, immunoreactivity in “dopamine islands”. Exposure of adolescent mice to methylphenidate resulted in an increase in eGFP in both compartments in the dorsolateral striatum but eGFP expression remained brighter in the striosomes. To address the role of activity in Nr4a1-eGFP expression, primary striatal cultures were prepared from neonatal mice and treated with forskolin, BDNF, SKF-83822 or high extracellular potassium and eGFP was measured fluorometrically in lysates. eGFP was induced in both neurons and contaminating glia in response to forskolin but SKF-83822, brain derived neurotrophic factor and depolarization increased eGFP in neuronal-like cells selectively. High levels of eGFP were primarily associated with Drd1+ neurons in vitro detected by immunofluorescence; however ∼15% of the brightly expressing cells contained punctate met-enkephalin immunoreactivity. The Nr4a1-GFP mouse strain will be a useful model for examining the connectivity, physiology, activity and development of the striosome system

Mechanochemical modeling of dynamic microtubule growth involving sheet-to-tube transition

Microtubule dynamics is largely influenced by nucleotide hydrolysis and the resultant tubulin configuration changes. The GTP cap model has been proposed to interpret the stabilizing mechanism of microtubule growth from the view of hydrolysis effects. Besides, the microtubule growth involves the closure of a curved sheet at its growing end. The curvature conversion also helps to stabilize the successive growth, and the curved sheet is referred to as the conformational cap. However, there still lacks theoretical investigation on the mechanical-chemical coupling growth process of microtubules. In this paper, we study the growth mechanisms of microtubules by using a coarse-grained molecular method. Firstly, the closure process involving a sheet-to-tube transition is simulated. The results verify the stabilizing effect of the sheet structure, and the minimum conformational cap length that can stabilize the growth is demonstrated to be two dimers. Then, we show that the conformational cap can function independently of the GTP cap, signifying the pivotal role of mechanical factors. Furthermore, based on our theoretical results, we describe a Tetris-like growth style of microtubules: the stochastic tubulin assembly is regulated by energy and harmonized with the seam zipping such that the sheet keeps a practically constant length during growth.Comment: 23 pages, 7 figures. 2 supporting movies have not been uploaded due to the file type restriction