Web 2.0 Projects at Warwick University Library

About 2 years ago at Warwick our senior managers encouraged Academic Support staff to really explore web 2.0 technologies and find out if anything particularly lent itself to supporting library work or marketing. We were given free reign to find out what worked and what suited the library, and what didn’t. The following brief overviews cover only four of the projects that have been running since then. We have also investigated much more, including Twitter, Google Documents, wiki reading lists, You-Tube and more, but we couldn’t possibly fit it all in here. The brief articles below are just to give a taste of the kind of projects we have worked on. There are many more members of staff involved and many more web 2.0 adventures underway..

Hepcidin and iron homeostasis during pregnancy.

Hepcidin is the master regulator of systemic iron bioavailability in humans. This review examines primary research articles that assessed hepcidin during pregnancy and postpartum and report its relationship to maternal and infant iron status and birth outcomes; areas for future research are also discussed. A systematic search of the databases Medline and Cumulative Index to Nursing and Allied Health returned 16 primary research articles including 10 human and six animal studies. Collectively, the results indicate that hepcidin is lower during pregnancy than in a non-pregnant state, presumably to ensure greater iron bioavailability to the mother and fetus. Pregnant women with undetectable serum hepcidin transferred a greater quantity of maternally ingested iron to their fetus compared to women with detectable hepcidin, indicating that maternal hepcidin in part determines the iron bioavailability to the fetus. However, inflammatory states, including preeclampsia, malaria infection, and obesity were associated with higher hepcidin during pregnancy compared to healthy controls, suggesting that maternal and fetal iron bioavailability could be compromised in such conditions. Future studies should examine the relative contribution of maternal versus fetal hepcidin to the control of placental iron transfer as well as optimizing maternal and fetal iron bioavailability in pregnancies complicated by inflammation

Behavioral and Neural Effects of Familiarization on Object-Background Associations

Associative memory is the ability to link together components of stimuli. Previous evidence suggests that prior familiarization with study items affects the nature of the association between stimuli. More specifically, novel stimuli are learned in a more context-dependent fashion than stimuli that have been encountered previously without the current context. In the current study, we first acquired behavioral data from 62 human participants to conceptually replicate this effect. Participants were instructed to memorize multiple objectscene pairs (study phase) and were then tested on their recognition memory for the objects (test phase). Importantly, 1 day prior, participants had been familiarized with half of the object stimuli. During the test phase, the objects were either matched to the same scene as during study (intact pair) or swapped with a different object’s scene (rearranged pair). Our results conceptually replicated the context-dependency effect by showing that breaking up a studied object-context pairing is more detrimental to object recognition performance for non-familiarized objects than for familiarized objects. Second, we used functional magnetic resonance imaging (fMRI) to determine whether medial temporal lobe encoding-related activity patterns are reflective of this familiarity-related context effect. Data acquired from 25 human participants indicated a larger effect of familiarization on encoding-related hippocampal activity for objects presented within a scene context compared to objects presented alone. Our results showed that both retrieval-related accuracy patterns and hippocampal activation patterns were in line with a familiarizationmediated context-dependency effec

Impact of polycyclic aromatic hydrocarbon exposure on cognitive function and neurodegeneration in humans:A systematic review and meta-analysis

INTRODUCTION: This article documents an emerging body of evidence concerning the neurological effect of polycyclic aromatic hydrocarbon (PAH) exposure with regard to cognitive function and increased risk of neurodegeneration. METHODS: Two electronic databases, PubMed and Web of Science, were systematically searched. RESULTS: The 37/428 studies selected included outcomes measuring cognitive function, neurobehavioral symptoms of impaired cognition, and pathologies associated with neurodegeneration from pre-natal (21/37 studies), childhood (14/37 studies), and adult (8/37 studies) PAH exposure. Sufficient evidence was found surrounding pre-natal exposure negatively impacting child intelligence, mental development, average overall development, verbal IQ, and memory; externalizing, internalizing, anxious, and depressed behaviors; and behavioral development and child attentiveness. Evidence concerning exposure during childhood and as an adult was scarce and highly heterogeneous; however, the presence of neurodegenerative biomarkers and increased concentrations of cryptic “self” antigens in serum and cerebrospinal fluid samples suggest a higher risk of neurodegenerative disease. Associations with lowered cognitive ability and impaired attentiveness were found in children and memory disturbances, specifically auditory memory, verbal learning, and general memory in adults. DISCUSSION: Although evidence is not yet conclusive and further research is needed, the studies included supported the hypothesis that PAH exposure negatively impacts cognitive function and increases the risk of neurodegeneration in humans, and recommends considering the introduction of a variable “rural vs. urban” as covariate for adjusting analyses, where the neurological functions affected (as result of our review) are outcome variables

Ventral extra-striate cortical areas are required for human visual texture segmentation

A patient (HJA) with bilateral occipital lobe damage to ventral cortical areas V2, V3 and V4 was tested on a texture segmentation task involving texture bar detection in an array of oriented lines. Performance detecting a target shape was assessed as the orientations of the background lines had increasing orientation noise. Control participants found the task easier when the background lines had the same orientation or only slightly shifted in orientation. HJA was poor with all backgrounds but particularly so when the background lines had the same or almost the same orientations. The results suggest that V1 alone is not sufficient to perform easy texture segmentation, even when the background of the display is a homogeneous texture. Ventral extra-striate cortical areas are needed in order to detect texture boundaries. We suggest that extra-striate visual areas enhance the borders between the target and background, while also playing a role in reducing the signal from homogeneous texture backgrounds

Genetic influences on viral-induced cytokine responses in the lung

Infection with respiratory viruses such as influenza, respiratory syncytial virus and coronavirus provides a difficult immunological challenge for the host, where a balance must be established between controlling viral replication and limiting damage to the delicate lung structure. Although the genetic architecture of host responses to respiratory viral infections is not yet understood, it is clear there is underlying heritability that influences pathogenesis. Immune control of virus replication is essential in respiratory infections, but overt activation can enhance inflammation and disease severity. Cytokines initiate antiviral immune responses but are implicated in viral pathogenesis. Here, we discuss how host genetic variation may influence cytokine responses to respiratory viral infections and, based on our current understanding of the role that cytokines play in viral pathogenesis, how this may influence disease severity. We also discuss how induced pluripotent stem cells may be utilised to probe the mechanistic implications of allelic variation in genes in virus-induced inflammatory responses. Ultimately, this could help to design better immune modulators, stratify high risk patients and tailor anti-inflammatory treatments, potentially expanding the ability to treat respiratory virus outbreaks in the future

Supporting the Academic Research Needs of Incarcerated Students: Building JSTOR's Offline Solution for Prison Education

Incarcerated students often lack access to the resources and conditions, both physical and digital, that make self-directed research and research skill-building possible. Due to technical constraints – most notably the lack of internet access in most prison environments – few incarcerated students have access to research databases commonly used by students to discover scholarly content that is relevant to their coursework, research projects, and broader learning pursuits. Not only does lack of research experience have an impact on students’ ability to engage with academic work, but it also leaves students without the fundamental information and digital literacy skills that are increasingly essential for future work and continued learning. Since 2007, JSTOR, a digital library of scholarly resources, has been making strides to amend this gap in available scholarly resources and research tools by providing JSTOR access to incarcerated learners. This paper describes the work undertaken by JSTOR Labs, an experimental product development team at JSTOR, to develop an offline index of scholarly resources designed to serve the research needs of incarcerated students. Funded by the Mellon Foundation, this project yielded lessons regarding how to scale access to digital scholarly resources given the changing landscape of technology in prison, and continues to shape JSTOR’s work to help improve higher education in prison and reduce barriers for student research

Impact of Social Contact on Predator-Induced Fear Responses in Young Male Chicks

Post-Traumatic Stress Disorder (PTSD) is thought to involve unusually strong associative memories between the intense fear felt during a traumatic experience and other environmental cues present at the time of the trauma. Our study uses an animal model to investigate social contact, one of the factors that can impact fear responses, to learn more about possible risk factors or interventions that may be relevant to humans who may experience PTSD. Freezing, or the cessation of movement, is a common fear response observed in laboratory animals in the presence of a perceived threat. We tested whether or not the degree of fear expressed by a social companion impacted the level of fear demonstrated by young male chicks. We initially predicted that the presence of a companion would reduce the fear demonstrated by a chick in response to an audiovisual predator stimulus, known as social buffering of fear. Previous results in our lab actually demonstrated the opposite effect. Chicks that experienced predator stimuli in the presence of another chick remained immobile longer than those who experienced the predator alone. It seemed as though chicks were mirroring the fear expressed by their companion. The current study was aimed at investigating whether social transmission of fear is, in fact, occurring between chicks. In order to more carefully control the fear response of companion chicks, we created two different videos to serve as the “companion” stimuli in this experiment. In one, a control chick walked around naturally, and in another, the chick demonstrated fear that was timed to the onset of the predator stimulus. After three daily habituation sessions to the testing apparatus and video screen, 48 Cornish Cross chicks were exposed to one of four conditions: no predator stimulus and a non-fearful video companion, no predator stimulus and a fearful companion, predator stimulus and a non-fearful companion, or predator stimulus and a fearful companion. One chick from each home cage was randomly assigned to each condition. Half of the chicks were exposed to the predator stimuli and half were not. In each group, half were paired with a fearful companion video and half were paired with a non-fearful companion video. Activity of each chick was recorded and quantified by behavioral analysis software (Smart 3.0, Panlab). Statistical analysis revealed a significant main effect of the predator stimulus, F(1, 89) = 28.11,

Interferon lambda is required for interferon gamma-expressing NK cell responses but does not afford antiviral protection during acute and persistent murine cytomegalovirus infection

Interferon lambda (IFNλ) is a group of cytokines that belong to the IL-10 family. They exhibit antiviral activities against certain viruses during infection of the liver and mucosal tissues. Here we report that IFNλ restricts in vitro replication of the β-herpesvirus murine cytomegalovirus (mCMV). However, IFNλR1-deficient (Ifnλr1-/-) mice were not preferentially susceptible to mCMV infection in vivo during acute infection after systemic or mucosal challenge, or during virus persistence in the mucosa. Instead, our studies revealed that IFNλ influences NK cell responses during mCMV infection. Ifnλr1-/- mice exhibited defective development of conventional interferon-gamma (IFNγ)-expressing NK cells in the spleen during mCMV infection whereas accumulation of granzyme B-expressing NK cells was unaltered. In vitro, development of splenic IFNγ+ NK cells following stimulation with IL-12 or, to a lesser extent, IL-18 was abrogated by IFNλR1-deficiency. Thus, IFNλ regulates NK cell responses during mCMV infection and restricts virus replication in vitro but is redundant in the control of acute and persistent mCMV replication within mucosal and non-mucosal tissues

Biodegradation of the Alkaline Cellulose Degradation Products Generated during Radioactive Waste Disposal.

The anoxic, alkaline hydrolysis of cellulosic materials generates a range of cellulose degradation products (CDP) including α and β forms of isosaccharinic acid (ISA) and is expected to occur in radioactive waste disposal sites receiving intermediate level radioactive wastes. The generation of ISA's is of particular relevance to the disposal of these wastes since they are able to form complexes with radioelements such as Pu enhancing their migration. This study demonstrates that microbial communities present in near-surface anoxic sediments are able to degrade CDP including both forms of ISA via iron reduction, sulphate reduction and methanogenesis, without any prior exposure to these substrates. No significant difference (n = 6, p = 0.118) in α and β ISA degradation rates were seen under either iron reducing, sulphate reducing or methanogenic conditions, giving an overall mean degradation rate of 4.7×10−2 hr−1 (SE±2.9×10−3). These results suggest that a radioactive waste disposal site is likely to be colonised by organisms able to degrade CDP and associated ISA's during the construction and operational phase of the facility