Assessment of Different Contaminants in Freshwater: Origin, Fate and Ecological Impact

Freshwater ecosystems cover over 15% of the world's surface and provide ecosystem services that are pivotal in sustaining human society. However, fast-growing anthropogenic activities have deleterious impacts on these ecosystems. In this Special Issue, we collect ten studies encompassing five different factors of freshwater contamination: landfill leaks, nutrients, heavy metals, emerging organic contaminants and marble slurry. Using different approaches, the studies detailed the direct and indirect effects that these contaminants have on a range of freshwater organisms, from bacteria to vertebrates. Although the papers covered here focused on specific case studies, they exemplify common issues that are expanding in groundwaters, hyporheic zones, streams, lakes and ponds around the world. All the aspects of these issues are in dire need of being continuously discussed among scientists, end-users and policy-makers. To this end, the Special Issue presents a new free software suite for the analysis of the ecological risk and conservation priority of freshwater ecosystems. The software can support local authorities in the preparation of management plans for freshwater basins pursuant to the Water Directives in Europe

Surviving drought: a framework for understanding animal responses to small rain events in the arid zone

Large rain events drive dramatic resource pulses and the complex pulse‐reserve dynamics of arid ecosystems change between high‐rain years and drought. However, arid‐zone animal responses to short‐term changes in climate are unknown, particularly smaller rain events that briefly interrupt longer‐term drought. Using arthropods as model animals, we determined the effects of a small rain event on arthropod abundance in western New South Wales, Australia during a longer‐term shift toward drought. Arthropod abundance decreased over 2 yr, but captures of 10 out of 15 ordinal taxa increased dramatically after the small rain event (\u3c40 \u3emm). The magnitude of increases ranged from 10.4 million% (collembolans) to 81% (spiders). After 3 months, most taxa returned to prerain abundance. However, small soil‐dwelling beetles, mites, spiders, and collembolans retained high abundances despite the onset of winter temperatures and lack of subsequent rain. As predicted by pulse‐reserve models, most arid‐zone arthropod populations declined during drought. However, small rain events may play a role in buffering some taxa from declines during longer‐term drought or other xenobiotic influences. We outline the framework for a new model of animal responses to environmental conditions in the arid zone, as some species clearly benefit from rain inputs that do not dramatically influence primary productivity

Microfluidic qPCR Enables High Throughput Quantification of Microbial Functional Genes but Requires Strict Curation of Primers

Quantification of microbial functional genes enhances predictions of soil biogeochemical process rates, but reliance on low-throughput quantitative PCR (qPCR) limits the scope of ecological studies to a handful of targets. Here, we explore whether microfluidic qPCR (MFQPCR) is a viable high-throughput alternative for functional gene quantification, by evaluating the efficiency, specificity and sensitivity of 29 established and 12 newly designed primer pairs targeting taxonomic, nitrogen-cycling, and hydrocarbon degradation genes in genomic DNA soil extracts, under three different sets of MFQPCR assay conditions. Without curation, commonly-used qPCR primer pairs yielded an extreme range of reaction efficiencies (25.9–100.1%), but when conditions were optimized, MFQPCR produced copy-number estimates comparable to traditional qPCR. To guide microbial soil ecologists considering adoption of MFQPCR, we present suggestions for primer selection, including omission of inosines, degeneracy scores of < 9, amplicon sizes of ≤ 211 bp, and GC content of 32–61%. We conclude that, while the nanoliter reaction volumes, rapid thermocycling and one-size-fits-all reaction conditions of MFQPCR necessitates more stringent primer selection criteria than is commonly applied in soil microbial ecology, the ability to quantify up to 96 targets in 96 samples makes MFQPCR a valuable tool for monitoring shifts in functional community abundances. MFQPCR will particularly suit studies targeting multiple clade-specific functional genes, or when primer design is informed by previous knowledge of the environment

Invertebrate traits, diversity and the vulnerability of groundwater ecosystems

Funding Information: This manuscript evolved from a workshop titled Trait‐based analyses in groundwater ecology and bioassessment held as part of the 24th International Conference on Subterranean Biology, 20–24th August 2018, University of Aveiro, Portugal. The workshop was supported by the conference organisers and the Macquarie University Species Spectrum Research Centre. Financial support was also provided to M.A.D. by the Portuguese government (Fundação para a Ciência e Tecnologia; FCT) through the research unit UIDB/04085/2020 (CENSE). A.S.P.S.R. was supported by the VILLUM FONDEN (research grant 15471) and by Portuguese National Funds through Fundação para a Ciência e a Tecnologia within the cE3c Unit funding UIDB/00329/2020. S.I.S. acknowledges funding through EU Operational Programme Research, Development and Education No. CZ.02.2.69/0.0/0.0/16_027/0008357, and by the Ministry of Education, Youth and Sports of the Czech Republic [grant number CZ.02.1.01/0.0/0.0/16 025/0007417]. K.L.K. was supported in part by Australian Research Council grant LP190100927. The comments of the Editor, Associate Editor and an anonymous reviewer greatly improved the MS. Open access publishing facilitated by Macquarie University, as part of the Wiley ‐ Macquarie University agreement via the Council of Australian University Librarians. Publisher Copyright: © 2022 The Authors. Functional Ecology published by John Wiley & Sons Ltd on behalf of British Ecological Society.Groundwater comprises the largest freshwater ecosystem on the planet. It has a distinct regime of extreme, yet stable environmental conditions that have favoured the development of similar morphological and functional traits in the resident invertebrate fauna (stygofauna). The analysis of community traits is increasingly used as an alternative to taxonomy-based assessments of biodiversity, especially for monitoring ecosystem status and linking the functions of organisms to ecological processes, yet it has been rarely applied to stygofauna and groundwater ecosystems. In this paper, we review the variation in functional traits among the invertebrate fauna of this important ecosystem. We focus on the stygofauna and processes of alluvium and fractured rock aquifers that are typified by small voids and fissures that constrain the habitats and environmental conditions. As a first step, we compare trait variability between groundwater and surface water invertebrate communities and then examine the significance of the ranges of these traits to the vulnerability of the ecosystem to change. Fifteen potentially useful functional traits are recognised. Eight of these have narrower ranges (i.e. exhibit fewer states, or attributes, of a particular trait) in groundwater than they do in surface water. Two traits have wider ranges. Our synthesis suggests that the relative stability of groundwater environments has led to low trait variability. The low biomass and low reproductive rate of stygofauna suggest that recovery potential following disturbance is likely to be low. For the purposes of both improved understanding and effective management, further work is needed to document additional functional traits and their states in groundwater fauna, enabling a better understanding of the relationship between response and effect traits in these ecosystems. Read the free Plain Language Summary for this article on the Journal blog.publishersversionpublishe

Groundwater is a hidden global keystone ecosystem

Groundwater is a vital ecosystem of the global water cycle, hosting unique biodiversity and providing essential services to societies. Despite being the largest unfrozen freshwater resource, in a period of depletion by extraction and pollution, groundwater environments have been repeatedly overlooked in global biodiversity conservation agendas. Disregarding the importance of groundwater as an ecosystem ignores its critical role in preserving surface biomes. To foster timely global conservation of groundwater, we propose elevating the concept of keystone species into the realm of ecosystems, claiming groundwater as a keystone ecosystem that influences the integrity of many dependent ecosystems. Our global analysis shows that over half of land surface areas (52.6%) has a medium‐to‐high interaction with groundwater, reaching up to 74.9% when deserts and high mountains are excluded. We postulate that the intrinsic transboundary features of groundwater are critical for shifting perspectives towards more holistic approaches in aquatic ecology and beyond. Furthermore, we propose eight key themes to develop a science‐policy integrated groundwater conservation agenda. Given ecosystems above and below the ground intersect at many levels, considering groundwater as an essential component of planetary health is pivotal to reduce biodiversity loss and buffer against climate change

The Toxicity and Uptake of As, Cr and Zn in a Stygobitic Syncarid (Syncarida: Bathynellidae)

Ecotoxicological data for obligate groundwater species are increasingly required to inform environmental protection for groundwater ecosystems. Bathynellid syncarids are one of several crustacean taxa found only in subsurface habitats. The aim of this paper is to assess the sensitivity of an undescribed syncarid (Malacostraca: Syncarida: Bathynellidae) to common groundwater contaminants, arsenic(III), chromium(VI) and zinc, and examine the bioaccumulation of As and Zn in these animals after 14-day exposure. Arsenic was the most toxic to the syncarid (14-day LC50 0.25 mg As/L), followed closely by chromium (14-day LC50 0.51 mg Cr/L) and zinc (14-day LC50 1.77 mg Zn/L). The accumulation of Zn was regulated at exposure concentrations below 1 mg Zn/L above which body concentrations increased, leading to increased mortality. Arsenic was not regulated and was accumulated by the syncarids at all concentrations above the control. These are the first published toxicity data for syncarids and show them to be among the most sensitive of stygobitic crustaceans so far tested, partly due to the low hardness of the groundwater from the aquifer they inhabit and in which they were tested. The ecological significance of the toxicant accumulation and mortality may be significant given the consequent population effects and low capacity for stygobitic populations to recover

The impact of water table drawdown and drying on subterranean aquatic fauna in in-vitro experiments.

The abstraction of groundwater is a global phenomenon that directly threatens groundwater ecosystems. Despite the global significance of this issue, the impact of groundwater abstraction and the lowering of groundwater tables on biota is poorly known. The aim of this study is to determine the impacts of groundwater drawdown in unconfined aquifers on the distribution of fauna close to the water table, and the tolerance of groundwater fauna to sediment drying once water levels have declined. A series of column experiments were conducted to investigate the depth distribution of different stygofauna (Syncarida and Copepoda) under saturated conditions and after fast and slow water table declines. Further, the survival of stygofauna under conditions of reduced sediment water content was tested. The distribution and response of stygofauna to water drawdown was taxon specific, but with the common response of some fauna being stranded by water level decline. So too, the survival of stygofauna under different levels of sediment saturation was variable. Syncarida were better able to tolerate drying conditions than the Copepoda, but mortality of all groups increased with decreasing sediment water content. The results of this work provide new understanding of the response of fauna to water table drawdown. Such improved understanding is necessary for sustainable use of groundwater, and allows for targeted strategies to better manage groundwater abstraction and maintain groundwater biodiversity

Habitat, water quality, seasonality, or site? Identifying environmental correlates of the distribution of groundwater biota

The distribution of biota in aquatic ecosystems, including aquifers, is collectively influenced by habitat structure, water quality, seasonality, and local variations in environmental conditions. However, little is known about the nature and relative influences of such factors in groundwater ecosystems. Our aims were to identify the key environmental variables influencing the distribution of biota within the Gwydir River alluvial aquifer in northwestern New South Wales, Australia, and to consider the relative importance of environmental variables, in terms of habitat structure, water quality, seasonality, and site attributes, to both microbial and invertebrate (stygofauna) assemblages. Stygofauna distribution was primarily influenced by habitat variables (predominantly sediment structure) followed by site variables (abundance of trees), with water quality and seasonality having relatively little influence. These results indicate that it is the aquifer conditions relating to habitat structure, water flow, and the supply of organic matter that are most important for determining stygofauna distribution. Microbial assemblage structure was not strongly correlated with habitat variables, possibly because habitat restraints do not exist because of their smaller size. Instead, seasonality and water-quality variables had the greatest influence on microbial assemblages. Microbes might respond to seasonal (particularly rainfall induced) changes in water quality more quickly than do stygofauna, which may explain the relatively greater importance of seasonality and water quality to microbial assemblages. Given that stygofauna are most influenced by habitat and site variables, and microbial assemblages are most influenced by seasonality and water quality, disturbance to any of these factors may threaten the stability and integrity of the groundwater ecosystem.15 page(s

Development of a groundwater fungal strain as a tool for toxicity assessment

Despite the significant ecological role played by fungi in groundwater, their value as indicators of groundwater pollution is not known, as fungi are notoriously challenging to assess for toxicity because of their varied morphological components, in particular their filamentous structures. Hence they are rarely used in environmental risk assessments and monitoring programs for aquatic systems. A rapid, low cost, 1-step static toxicity test targeting the hyphal components of fungi was developed that subsequently demonstrated the sensitivity of a ubiquitous and dominant groundwater fungal strain to metal contaminants. The strain demonstrates sensitivity to chromium>copper>zinc and relative resistance to arsenic. The introduction of a novel group of groundwater microorganismsthe fungifor toxicity evaluation will strengthen current risk assessment programs for these ecosystems.9 page(s