A micro-mechanics based extension of the GTN continuum model accounting for random void distributions

Randomness in the void distribution within a ductile metal complicates quantitative modeling of damage following the void growth to coalescence failure process. Though the sequence of micro-mechanisms leading to ductile failure is known from unit cell models, often based on assumptions of a regular distribution of voids, the effect of randomness remains a challenge. In the present work, mesoscale unit cell models, each containing an ensemble of four voids of equal size that are randomly distributed, are used to find statistical effects on the yield surface of the homogenized material. A yield locus is found based on a mean yield surface and a standard deviation of yield points obtained from 15 realizations of the four-void unit cells. It is found that the classical GTN model very closely agrees with the mean of the yield points extracted from the unit cell calculations with random void distributions, while the standard deviation $\textbf{S}$ varies with the imposed stress state. It is shown that the standard deviation is nearly zero for stress triaxialities $T\leq1/3$, while it rapidly increases for triaxialities above $T\approx 1$, reaching maximum values of about $\textbf{S}/\sigma_0\approx0.1$ at $T \approx 4$. At even higher triaxialities it decreases slightly. The results indicate that the dependence of the standard deviation on the stress state follows from variations in the deformation mechanism since a well-correlated variation is found for the volume fraction of the unit cell that deforms plastically at yield. Thus, the random void distribution activates different complex localization mechanisms at high stress triaxialities that differ from the ligament thinning mechanism forming the basis for the classical GTN model. A method for introducing the effect of randomness into the GTN continuum model is presented, and an excellent comparison to the unit cell yield locus is achieved

Subantarctic mode water in the southeast Pacific : effect of exchange across the Subantarctic Front

Author Posting. © American Geophysical Union, 2013. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 118 (2013): 2052–2066, doi:10.1002/jgrc.20144.This study considered cross-frontal exchange as a possible mechanism for the observed along-front freshening and cooling between the 27.0 and 27.3 kg m − 3 isopycnals north of the Subantarctic Front (SAF) in the southeast Pacific Ocean. This isopycnal range, which includes the densest Subantarctic Mode Water (SAMW) formed in this region, is mostly below the mixed layer, and so experiences little direct air-sea forcing. Data from two cruises in the southeast Pacific were examined for evidence of cross-frontal exchange; numerous eddies and intrusions containing Polar Frontal Zone (PFZ) water were observed north of the SAF, as well as a fresh surface layer during the summer cruise that was likely due to Ekman transport. These features penetrated north of the SAF, even though the potential vorticity structure of the SAF should have acted as a barrier to exchange. An optimum multiparameter (OMP) analysis incorporating a range of observed properties was used to estimate the cumulative cross-frontal exchange. The OMP analysis revealed an along-front increase in PFZ water fractional content in the region north of the SAF between the 27.1 and 27.3 kg m − 3 isopycnals; the increase was approximately 0.13 for every 15° of longitude. Between the 27.0 and 27.1 kg m − 3 isopycnals, the increase was approximately 0.15 for every 15° of longitude. A simple bulk calculation revealed that this magnitude of cross-frontal exchange could have caused the downstream evolution of SAMW temperature and salinity properties observed by Argo profiling floats.NSF Ocean Sciences grant OCE-0327544 supported L.D.T., T.K.C., and J.H. and funded the two research cruises; NSF Ocean Sciences grant OCE-0850869 funded part of the analysis. BMS’s contribution to this work was undertaken as part of the Australian Climate Change Science Program, funded jointly by the Department of Climate Change and CSIRO.2013-10-2

Computational Modeling of Lauric Acid at the Organic−Water Interface

Where water meets an immiscible liquid, the orientation and hydrogen bonding patterns of the molecules nearest the interface differ significantly from those in the bulk. These differences drive important interface-specific phenomena, including interfacial tension and the adsorption of other molecular species. Additionally, surfactants and other amphiphilic molecules present at the interface interact with both the aqueous and hydrophobic layers in a complex fashion that can dramatically change the characteristics of the interface as a whole. In this study, classical molecular dynamics computer simulations have been employed to investigate the accommodation of lauric acid at the water− hexane and water−carbon tetrachloride interfaces. Our results show that the behavior of surfactant molecules in the interfacial region is strongly influenced by the protonation of their headgroups. Deprotonated lauric acid molecules cause a larger increase in interfacial width than their protonated counterparts. The carboxylate headgroups of laurate anions in the interfacial region consistently point toward the water layer, while the orientation of the protonated lauric acid headgroups changes with depth into the water layer

The role of air-sea fluxes in Subantarctic Mode Water formation

Author Posting. © American Geophysical Union, 2012. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 117 (2012): C03040, doi:10.1029/2011JC007798.Two hydrographic surveys and a one-dimensional mixed layer model are used to assess the role of air-sea fluxes in forming deep Subantarctic Mode Water (SAMW) mixed layers in the southeast Pacific Ocean. Forty-two SAMW mixed layers deeper than 400 m were observed north of the Subantarctic Front during the 2005 winter cruise, with the deepest mixed layers reaching 550 m. The densest, coldest, and freshest mixed layers were found in the cruise's eastern sections near 77°W. The deep SAMW mixed layers were observed concurrently with surface ocean heat loss of approximately −200 W m−2. The heat, momentum, and precipitation flux fields of five flux products are used to force a one-dimensional KPP mixed layer model initialized with profiles from the 2006 summer cruise. The simulated winter mixed layers generated by all of the forcing products resemble Argo observations of SAMW; this agreement also validates the flux products. Mixing driven by buoyancy loss and wind forcing is strong enough to deepen the SAMW layers. Wind-driven mixing is central to SAMW formation, as model runs forced with buoyancy forcing alone produce shallow mixed layers. Air-sea fluxes indirectly influence winter SAMW properties by controlling how deeply the profiles mix. The stratification and heat content of the initial profiles determine the properties of the SAMW and the likelihood of deep mixing. Summer profiles from just upstream of Drake Passage have less heat stored between 100 and 600 m than upstream profiles, and so, with sufficiently strong winter forcing, form a cold, dense variety of SAMW.NSF Ocean Sciences grant OCE-0327544 supported LDT, TKC, and JH and funded the two research cruises. BMS’s contribution to this work was undertaken as part of the Australian Climate Change Science Program, funded jointly by the Department of Climate Change and Energy Efficiency and CSIRO. The QuikSCAT wind mapping method [Kelly et al., 1999], used to create the Kelly flux product, was sponsored by NASA’s Ocean Vector Winds Science. NCEP Reanalysis data were provided by the NOAA/OAR/ESRL PSD. WHOI’s OAFlux project is funded by the NOAA Climate Observations and Monitoring (COM) program.2012-09-2

Higher levels of bodily pain in people with long-term type 1 diabetes: associations with quality of life, depressive symptoms, fatigue and glycaemic control – the Dialong study

Aims To compare reported level of bodily pain, overall and health‐related quality of life (QoL), depression and fatigue in people with long‐term type 1 diabetes vs. a comparison group without diabetes. Further, to examine the associations of total bodily pain with QoL, depression, fatigue and glycaemic control in the diabetes group. Methods Cross‐sectional study of 104 (76% of eligible) people with type 1 diabetes of ≥ 45 years’ duration attending the Norwegian Diabetes Centre and 75 persons without diabetes who completed questionnaires measuring bodily pain (RAND‐36 bodily pain domain), shoulder pain (Shoulder Pain and Disability Index), hand pain (Australian/Canadian Osteoarthritis Hand Index), overall QoL (World Health Organization Quality of Life – BREF), health‐related QoL (RAND‐36), diabetes‐specific QoL (Audit of Diabetes‐Dependent Quality of Life; only diabetes group), depression (Patient Health Questionnaire) and fatigue (Fatigue questionnaire). For people with type 1 diabetes, possible associations between the bodily pain domain (lower scores indicate higher levels of bodily pain) and other questionnaire scores, were measured with regression coefficients (B) per 10‐unit increase in bodily pain score from linear regression. Results The diabetes group reported higher levels of bodily (P = 0.003), shoulder and hand pain (P < 0.001) than the comparison group. In the diabetes group, bodily pain was associated with lower overall and diabetes‐specific QoL [B (95% confidence intervals)]: 0.2 (0.1, 0.2) and 0.2 (0.1, 0.3); higher levels of depression −1.0 (−1.3, −0.7) and total fatigue −1.5 (−1.9, −1.2); and worse glycaemic control HbA1c (mmol/mol; %) −0.8 (−1.5, −0.1); −0.1 (−0.1, −0.01). Conclusions People with long‐term type 1 diabetes experience a high level of bodily pain compared with a comparison group. Total bodily pain was associated with worse QoL and glycaemic control.publishedVersio

Construction of an evidence-based integrated morphology cleavage embryo score for implantation potential of embryos scored and transferred on day 2 after oocyte retrieval

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The prediction of fatigue using speech as a biosignal

Automatic systems for estimating operator fatigue have application in safety-critical environments. We develop and evaluate a system to detect fatigue from speech recordings collected from speakers kept awake over a 60-hour period. A binary classification system (fatigued/not-fatigued) based on time spent awake showed good discrimination, with 80 % unweighted accuracy using raw features, and 90 % with speaker-normalized features. We describe the data collection, feature analysis, machine learning and cross-validation used in the study. Results are promising for real-world applications in domains such as aerospace, transportation and mining where operators are in regular verbal communication as part of their normal working activities

Quantitative analysis methods for studying fenestrations in liver sinusoidal endothelial cells. A comparative study

Liver Sinusoidal Endothelial Cells (LSEC) line the hepatic vasculature providing blood filtration via transmembrane nanopores called fenestrations. These structures are 50−300 nm in diameter, which is below the resolution limit of a conventional light microscopy. To date, there is no standardized method of fenestration image analysis. With this study, we provide and compare three different approaches: manual measurements, a semi-automatic (threshold-based) method, and an automatic method based on user-friendly open source machine learning software. Images were obtained using three super resolution techniques – atomic force microscopy (AFM), scanning electron microscopy (SEM), and structured illumination microscopy (SIM). Parameters describing fenestrations such as diameter, area, roundness, frequency, and porosity were measured. Finally, we studied the user bias by comparison of the data obtained by five different users applying provided analysis methods

Transthoracic echocardiography for imaging of the different coronary artery segments: a feasibility study

<p>Abstract</p> <p>Background</p> <p>Transthoracic echocardiography (TTE) may be used for direct inspection of various parts of the main coronary arteries for detection of coronary stenoses and occlusions. We aimed to assess the feasibility of TTE to visualise the complete segments of the left main (LM), left descending (LAD), circumflex (Cx) and right (RCA) coronary arteries.</p> <p>Methods</p> <p>One hundred and eleven patients scheduled for diagnostic coronary angiography because of chest pain or acute coronary syndrome had a TTE study to map the passage of the main coronary arteries. LAD, Cx and RCA were each divided into proximal, middle and distal segments. If any part of the individual segment of a coronary artery with antegrade blood flow was not visualised, the segment was labeled as not satisfactorily seen.</p> <p>Results</p> <p>Complete imaging of the LM was achieved in 98% of the patients. With antegrade directed coronary artery flow, the proximal, middle and distal segments of LAD were completely seen in 96%, 95% and 91% of patients, respectively. Adding the completely seen segments with antegrade coronary flow and segments with retrograde coronary flow, the proximal, middle and distal segments of LAD were adequately visualised in 96%, 96% and 93% of patients, respectively. With antegrade directed coronary artery flow, the proximal, middle and distal segments of Cx were completely seen in 88%, 61% and 3% and in RCA in 40%, 28% and 54% of patients. Retrograde coronary artery flow was correctly identified as verified by coronary angiography in seven coronary segments, mainly in the posterior descending artery (labeled as the distal segment of RCA) and distal LAD.</p> <p>Conclusions</p> <p>TTE is a feasible method for complete demonstration of coronary flow in the LM, the proximal Cx and the different segments of LAD, but less suitable for the RCA and mid and distal segments of the Cx. (ClinicalTrials.gov number NTC00281346.)</p

Alternative splicing discriminates molecular subtypes and has prognostic impact in diffuse large B-cell lymphoma

Effect of alternative splicing (AS) on diffuse large B-cell lymphoma (DLBCL) pathogenesis and survival has not been systematically addressed. Here, we compared differentially expressed genes and exons in association with survival after chemoimmunotherapy, and between germinal center B-cell like (GCB) and activated B-cell like (ABC) DLBCLs. Genome-wide exon array-based screen was performed from samples of 38 clinically high-risk patients who were treated in a Nordic phase II study with dose-dense chemoimmunotherapy and central nervous system prophylaxis. The exon expression profile separated the patients according to molecular subgroups and survival better than the gene expression profile. Pathway analyses revealed enrichment of AS genes in inflammation and adhesion-related processes, and in signal transduction, such as phosphatidylinositol signaling system and adenosine triphosphate binding cassette transporters. Altogether, 49% of AS-related exons were protein coding, and domain prediction showed 28% of such exons to include a functional domain, such as transmembrane helix domain or phosphorylation sites. Validation in an independent cohort of 92 DLBCL samples subjected to RNA-sequencing confirmed differential exon usage of selected genes and association of AS with molecular subtypes and survival. The results indicate that AS events are able to discriminate GCB and ABC DLBCLs and have prognostic impact in DLBCL.Peer reviewe