Involvement of Plasmodium falciparum protein kinase CK2 in the chromatin assembly pathway

<p>Abstract</p> <p>Background</p> <p>Protein kinase CK2 is a pleiotropic serine/threonine protein kinase with hundreds of reported substrates, and plays an important role in a number of cellular processes. The cellular functions of <it>Plasmodium falciparum </it>CK2 (PfCK2) are unknown. The parasite's genome encodes one catalytic subunit, PfCK2α, which we have previously shown to be essential for completion of the asexual erythrocytic cycle, and two putative regulatory subunits, PfCK2β1 and PfCK2β2.</p> <p>Results</p> <p>We now show that the genes encoding both regulatory PfCK2 subunits (PfCK2β1 and PfCK2β2) cannot be disrupted. Using immunofluorescence and electron microscopy, we examined the intra-erythrocytic stages of transgenic parasite lines expressing hemagglutinin (HA)-tagged catalytic and regulatory subunits (HA-CK2α, HA-PfCK2β1 or HA-PfCK2β2), and localized all three subunits to both cytoplasmic and nuclear compartments of the parasite. The same transgenic parasite lines were used to purify PfCK2β1- and PfCK2β2-containing complexes, which were analyzed by mass spectrometry. The recovered proteins were unevenly distributed between various pathways, with a large proportion of components of the chromatin assembly pathway being present in both PfCK2β1 and PfCK2β2 precipitates, implicating PfCK2 in chromatin dynamics. We also found that chromatin-related substrates such as nucleosome assembly proteins (Naps), histones, and two members of the Alba family are phosphorylated by PfCK2α <it>in vitro</it>.</p> <p>Conclusions</p> <p>Our reverse-genetics data show that each of the two regulatory PfCK2 subunits is required for completion of the asexual erythrocytic cycle. Our interactome study points to an implication of PfCK2 in many cellular pathways, with chromatin dynamics being identified as a major process regulated by PfCK2. This study paves the way for a kinome-wide interactomics-based approach to elucidate protein kinase function in malaria parasites.</p

Heterogeneous-k-core versus Bootstrap Percolation on Complex Networks

We introduce the heterogeneous-$k$-core, which generalizes the $k$-core, and contrast it with bootstrap percolation. Vertices have a threshold $k_i$ which may be different at each vertex. If a vertex has less than $k_i$ neighbors it is pruned from the network. The heterogeneous-$k$-core is the sub-graph remaining after no further vertices can be pruned. If the thresholds $k_i$ are $1$ with probability $f$ or $k \geq 3$ with probability $(1-f)$, the process forms one branch of an activation-pruning process which demonstrates hysteresis. The other branch is formed by ordinary bootstrap percolation. We show that there are two types of transitions in this heterogeneous-$k$-core process: the giant heterogeneous-$k$-core may appear with a continuous transition and there may be a second, discontinuous, hybrid transition. We compare critical phenomena, critical clusters and avalanches at the heterogeneous-$k$-core and bootstrap percolation transitions. We also show that network structure has a crucial effect on these processes, with the giant heterogeneous-$k$-core appearing immediately at a finite value for any $f > 0$ when the degree distribution tends to a power law $P(q) \sim q^{-\gamma}$ with $\gamma < 3$.Comment: 10 pages, 4 figure

Laue Lens Development for Hard X-rays (>60 keV)

Results of reflectivity measurements of mosaic crystal samples of Cu (111) are reported. These tests were performed in the context of a feasibility study of a hard X-ray focusing telescope for space astronomy with energy passband from 60 to 600 keV. The technique envisaged is that of using mosaic crystals in transmission configuration that diffract X-rays for Bragg diffraction (Laue lens). The Laue lens assumed has a spherical shape with focal length $f$. It is made of flat mosaic crystal tiles suitably positioned in the lens. The samples were grown and worked for this project at the Institute Laue-Langevin (ILL) in Grenoble (France), while the reflectivity tests were performed at the X-ray facility of the Physics Department of the University of Ferrara.Comment: 6 pages, 12 figures, accepted for publication in IEEE Transactions on Nuclear Scienc

Progressive changes in magma transport at the active Serreta Ridge, Azores

Volcanism in the Eastern Azores Plateau occurs at large central volcanoes and along subaerial and submarine fissure zones, resulting from a mantle melting anomaly combined with transtensional stresses. Volcanic structures are aligned WNW-ESE and NW-SE, reflecting two tectonic stress fields that control the direction of lateral melt transport. Terceira Island is influenced by both stress fields, dividing the island into an eastern and western part. Several submarine volcanic ridges with variable orientations are located west of Santa Barbara, the youngest central volcano on Terceira. Major, trace element and Sr-Nd-Pb-Hf isotope compositions from submarine lavas and glasses, in part associated with the 1998-2001 Serreta Ridge eruption, vary between different lava suites, suggesting a formation from different mantle sources. Submarine lavas are more primitive than those from Santa Barbara volcano, indicating that they are not laterally connected with the shallow magma reservoir located in 2- to 5-km depth beneath the central volcano. Mineral thermobarometric data suggest that the older Serreta magmas were laterally transported at depths >5 km from Santa Barbara predominantly in WNW direction. We propose that lithospheric extension controls magma transport from the central volcano to Serreta Ridge. The youngest Serreta lavas differ from Santa Barbara and other submarine ridges in having less radiogenic Pb and higher Hf isotope ratios representing a new magma pulse ascending from the mantle. We conclude that lateral magma transport and the morphology of volcanic ridges are controlled by tectonic stresses in the lithosphere, whereas vertical melt transport is initiated by processes in the mantle.Peer reviewe

The entropy of randomized network ensembles

Randomized network ensembles are the null models of real networks and are extensivelly used to compare a real system to a null hypothesis. In this paper we study network ensembles with the same degree distribution, the same degree-correlations or the same community structure of any given real network. We characterize these randomized network ensembles by their entropy, i.e. the normalized logarithm of the total number of networks which are part of these ensembles. We estimate the entropy of randomized ensembles starting from a large set of real directed and undirected networks. We propose entropy as an indicator to assess the role of each structural feature in a given real network.We observe that the ensembles with fixed scale-free degree distribution have smaller entropy than the ensembles with homogeneous degree distribution indicating a higher level of order in scale-free networks.Comment: (6 pages,1 figure,2 tables

Soil Microbial Community Changes in Wooded Mountain Pastures due to Simulated Effects of Cattle Grazing

The effect of cattle activity on pastures can be subdivided into three categories of disturbances: herbage removal, dunging and trampling. The objective of this study was to assess separately or in combination the effect of these factors on the potential activities of soil microbial communities and to compare these effects with those of soil properties and plant composition or biomass. Controlled treatments simulating the three factors were applied in a fenced area including a light gradient (sunny and shady situation): (i) repeated mowing; (ii) trampling; (iii) fertilizing with a liquid mixture of dung and urine. In the third year of the experiment, community level physiological profiles (CLPP) (Biolog Ecoplates™) were measured for each plots. Furthermore soil chemical properties (pH, total organic carbon, total nitrogen and total phosphorus), plant species composition and plant biomass were also assessed. Despite differences in plant communities and soil properties, the metabolic potential of the microbial community in the sunny and in the shady situations were similar. Effects of treatments on microbial communities were more pronounced in the sunny than in the shady situation. In both cases, repeated mowing was the first factor retained for explaining functional variations. In contrast, fertilizing was not a significant factor. The vegetation explained a high proportion of variation of the microbial community descriptors in the sunny situation, while no significant variation appeared under shady condition. The three components of cattle activities influenced differently the soil microbial communities and this depended on the light conditions within the wooded pasture. Cattle activities may also change spatially at a fine scale and short-term and induce changes in the microbial community structure. Thus, the shifting mosaic that has been described for the vegetation of pastures may also apply for below-ground microbial communitie