Combinatorial control of temporal gene expression in the Drosophila wing by enhancers and core promoters

Abstract Background The transformation of a developing epithelium into an adult structure is a complex process, which often involves coordinated changes in cell proliferation, metabolism, adhesion, and shape. To identify genetic mechanisms that control epithelial differentiation, we analyzed the temporal patterns of gene expression during metamorphosis of the Drosophila wing. Results We found that a striking number of genes, approximately 50% of the Drosophila transcriptome, exhibited changes in expression during a time course of wing development. While cis-acting enhancer sequences clearly correlated with these changes, a stronger correlation was discovered between core-promoter types and the dynamic patterns of gene expression within this differentiating tissue. In support of the hypothesis that core-promoter type influences the dynamics of expression, expression levels of several TATA-box binding protein associated factors (TAFs) and other core promoter-associated components changed during this developmental time course, and a testes-specific TAF (tTAF) played a critical role in timing cellular differentiation within the wing. Conclusions Our results suggest that the combinatorial control of gene expression via cis-acting enhancer sequences and core-promoter types, determine the complex changes in gene expression that drive morphogenesis and terminal differentiation of the Drosophila wing epithelium.http://deepblue.lib.umich.edu/bitstream/2027.42/112935/1/12864_2012_Article_4965.pd

Genetic variation in EPHA contributes to sensitivity to paclitaxel‐induced peripheral neuropathy

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/154957/1/bcp14192.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/154957/2/bcp14192_am.pd

Transport of organic carbon from the California coast to the slope region : a study of Δ14C and δ13C signatures of organic compound classes

Author Posting. © American Geophysical Union, 2005. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Global Biogeochemical Cycles 19 (2005): GB2018, doi:10.1029/2004GB002422.Surface sediments along a transect from an abyssal site in the northeastern Pacific (Station M, 34°50′N, 123°00′W) to a small mountainous river on the California coast (Santa Clara River) were studied to investigate the sources and cycling of organic matter on the continental margin. Sediment samples were separated into organic compound fractions (extractable lipids, amino acids (THAA), carbohydrates (TCHO), and the acid-insoluble fraction), and their carbon isotope ratios were measured. The Δ14C values of all the THAA and TCHO fractions were greater than −100‰, indicating relatively modern organic carbon (OC) source(s), and rapid cycling of these fractions. In contrast, the Δ14C values of extractable lipids and the acid-insoluble fraction were distinctly lower than those of the THAA and TCHO fractions. The Δ14C values of source OC to the sediments were estimated using a simple mixed layer model. These values were lower than the Δ14C signatures of pre-industrial plankton suggesting input of both old OC and contemporary plankton to the margin sediments. The source of old OC at the 2000-m site was likely from laterally transported coastal sediment. The estimated low Δ14C value of the transported OC suggests that old lipids and acid-insoluble material were selectively transported to the 2000-m site. The contribution of riverine POC to the margin sediments were estimated from Δ14C and δ13C values and indicate that relict OC exported by rivers was an important source of old lipids and acid-insoluble material to sedimentary OC on the shelf.This research was supported by NSF OCE Chemical Oceanography Program and ACS Petroleum Research Fund (to E. R. M. D.), the UCOP Marine Science Fellowship Program (to J. H.), and the Dreyfus Foundation for an Environmental Science Postdoctoral Fellowship grant (to T. K.)

Sustainable Urban Systems: Co-design and Framing for Transformation

Rapid urbanisation generates risks and opportunities for sustainable development. Urban policy and decision makers are challenged by the complexity of cities as social–ecological–technical systems. Consequently there is an increasing need for collaborative knowledge development that supports a whole-of-system view, and transformational change at multiple scales. Such holistic urban approaches are rare in practice. A co-design process involving researchers, practitioners and other stakeholders, has progressed such an approach in the Australian context, aiming to also contribute to international knowledge development and sharing. This process has generated three outputs: (1) a shared framework to support more systematic knowledge development and use, (2) identification of barriers that create a gap between stated urban goals and actual practice, and (3) identification of strategic focal areas to address this gap. Developing integrated strategies at broader urban scales is seen as the most pressing need. The knowledge framework adopts a systems perspective that incorporates the many urban trade-offs and synergies revealed by a systems view. Broader implications are drawn for policy and decision makers, for researchers and for a shared forward agenda

Scientists and the Selection Task

Contrary to some recent findings reported in this journal by Tweney and Yachanin, the results for twenty scientists on the selection task reflected little understanding of the power of disconfirmatory data in assessing conditionals. In agreement with previous studies by Mahoney and Kimper, and by Kern, Mirels and Hinshaw, confirmatory data were sought more often. The results indicate that scientists\u27 performance is similar to that of undergraduates, mainly influenced by the problem content, and do not support Tweney and Yachanin\u27s claim of scientists\u27 competence on the selection task. Memory-cueing plus reasoning-by-analogy is offered as an alternative explanation

Misconceptions Tests or Misconceived Tests?

It was found that taking a psychology course in high school did not improve the performance of college students in an introductory psychology class on a modified version of Vaughan\u27s (1977) misconceptions test. However, college experience did lead to a significant, but not large, improvement. A comparison of our results with those from previous studies, along with an analysis of specific test items, indicated that perhaps the test itself is misconceived