Density Functional Molecular Computations on Protonated Serotonin in the Gas Phase and Various Solvent Media

5-Hydroxytryptamine (serotonin) was geometry optimized at the B3YP/6-31G(d) level of theory to determine the energetically most favourable conformations of the aromatic hydroxyl group and the protonated ethylamine side chain. The hydroxyl group was found to be most stable at anti for all conformations, and the two lowest energy gas phase conformers found were: chi(2) = g(+), chi(3) = g(-) and chi(2) = g(-), chi(3) = g(+). The protonated amino group was found equally stable at g+, g- and anti. The transition structures linking each gas phase minimum were also computed. Minima found were subjected to solvation calculations in chloroform, DMSO, ethanol and water, which shifted their relative stabilities. (C) 2002 Elsevier Science B.V. All rights reserved

Determining Histories of Slip on Normal Faults With Bedrock Scarps Using Cosmogenic Nuclide Exposure Data

Cosmogenic exposure data can be used to calculate time-varying fault slip rates on normal faults with exposed bedrock scarps. The method relies on assumptions related to how the scarp is preserved, which should be consistent at multiple locations along the same fault. Previous work commonly relied on cosmogenic data from a single sample locality to determine the slip rate of a fault. Here we show that by applying strict sampling criteria and using geologically informed modeling parameters in a Bayesian-inference Markov chain Monte Carlo method, similar patterns of slip rate changes can be modeled at multiple sites on the same fault. Consequently, cosmogenic data can be used to resolve along-strike fault activity. We present cosmogenic 36Cl concentrations from seven sites on two faults in the Italian Apennines. The average slip rate varies between sites on the Campo Felice Fault (0.84 ± 0.23 to 1.61 ± 0.27 mm yr−1), and all sites experienced a period of higher than average slip rate between 0.5 and 2 ka and a period of lower than average slip rate before 3 ka. On the Roccapreturo fault, slip rate in the center of the fault is 0.55 ± 0.11 and 0.35 ± 0.05 mm yr−1 at the fault tip near a relay zone. The estimated time since the last earthquake is the same at each site along the same fault (631 ± 620 years at Campo Felice and 2,603 ± 1,355 years at Roccapreturo). These results highlight the potential for cosmogenic exposure data to reveal the detailed millennial history of earthquake slip on active normal faults

Sequences of Bubbles and Holes: New Phases of Kaluza-Klein Black Holes

We construct and analyze a large class of exact five- and six-dimensional regular and static solutions of the vacuum Einstein equations. These solutions describe sequences of Kaluza-Klein bubbles and black holes, placed alternately so that the black holes are held apart by the bubbles. Asymptotically the solutions are Minkowski-space times a circle, i.e. Kaluza-Klein space, so they are part of the (\mu,n) phase diagram introduced in hep-th/0309116. In particular, they occupy a hitherto unexplored region of the phase diagram, since their relative tension exceeds that of the uniform black string. The solutions contain bubbles and black holes of various topologies, including six-dimensional black holes with ring topology S^3 x S^1 and tuboid topology S^2 x S^1 x S^1. The bubbles support the S^1's of the horizons against gravitational collapse. We find two maps between solutions, one that relates five- and six-dimensional solutions, and another that relates solutions in the same dimension by interchanging bubbles and black holes. To illustrate the richness of the phase structure and the non-uniqueness in the (\mu,n) phase diagram, we consider in detail particular examples of the general class of solutions.Comment: 71 pages, 22 figures, v2: Typos fixed, comment added in sec. 5.

Langevin Simulation of Thermally Activated Magnetization Reversal in Nanoscale Pillars

Numerical solutions of the Landau-Lifshitz-Gilbert micromagnetic model incorporating thermal fluctuations and dipole-dipole interactions (calculated by the Fast Multipole Method) are presented for systems composed of nanoscale iron pillars of dimension 9 nm x 9 nm x 150 nm. Hysteresis loops generated under sinusoidally varying fields are obtained, while the coercive field is estimated to be 1979 $\pm$ 14 Oe using linear field sweeps at T=0 K. Thermal effects are essential to the relaxation of magnetization trapped in a metastable orientation, such as happens after a rapid reversal of an external magnetic field less than the coercive value. The distribution of switching times is compared to a simple analytic theory that describes reversal with nucleation at the ends of the nanomagnets. Results are also presented for arrays of nanomagnets oriented perpendicular to a flat substrate. Even at a separation of 300 nm, where the field from neighboring pillars is only $\sim$ 1 Oe, the interactions have a significant effect on the switching of the magnets.Comment: 19 pages RevTeX, including 12 figures, clarified discussion of numerical technique

Towards a population of HMXB/NS microquasars as counterparts of low-latitude unidentified EGRET sources

The discovery of the microquasar LS 5039 well within the 95% conficence contour of the Unidentified EGRET Source (UES) 3EG J1824-1514 was a major step towards the possible association between microquasars (MQs) and UESs. The recent discovery of precessing relativistic radio jets in LS I +61 303, a source associated for long time with 2CG 135+01 and with the UES 3EG J0241+6103, has given further support to this idea. Finally, the very recently proposed association between the microquasar candidate AX J1639.0-4642 and the UES 3EG J1639-4702 points towards a population of High Mass X-ray Binary (HMXB)/Neutron Star (NS) microquasars as counterparts of low-latitude unidentified EGRET sources.Comment: 12 pages, 7 figures. Proceedings of the Conference "The Multiwavelength Approach to Unidentified Gamma-ray Sources", to appear in the journal Astrophysics and Space Scienc

Black String Entropy and Fourier-Mukai Transform

We propose a microscopic description of black strings in F-theory based on string duality and Fourier-Mukai transform. These strings admit several different microscopic descriptions involving D-brane as well as M2 or M5-brane configurations on elliptically fibered Calabi-Yau threefolds. In particular our results can also be interpreted as an asymptotic microstate count for D6-D2-D0 configurations in the limit of large D2-charge on the elliptic fiber. The leading behavior of the microstate degeneracy in this limit is shown to agree with the macroscopic entropy formula derived from the black string supergravity solution.Comment: 22 pages, latex; v2: substantial revision of the macroscopic description of the system; results essentially unchange

Revealing uncertainty in the status of biodiversity change

Biodiversity faces unprecedented threats from rapid global change1. Signals of biodiversity change come from time-series abundance datasets for thousands of species over large geographic and temporal scales. Analyses of these biodiversity datasets have pointed to varied trends in abundance, including increases and decreases. However, these analyses have not fully accounted for spatial, temporal and phylogenetic structures in the data. Here, using a new statistical framework, we show across ten high-profile biodiversity datasets2,3,4,5,6,7,8,9,10,11 that increases and decreases under existing approaches vanish once spatial, temporal and phylogenetic structures are accounted for. This is a consequence of existing approaches severely underestimating trend uncertainty and sometimes misestimating the trend direction. Under our revised average abundance trends that appropriately recognize uncertainty, we failed to observe a single increasing or decreasing trend at 95% credible intervals in our ten datasets. This emphasizes how little is known about biodiversity change across vast spatial and taxonomic scales. Despite this uncertainty at vast scales, we reveal improved local-scale prediction accuracy by accounting for spatial, temporal and phylogenetic structures. Improved prediction offers hope of estimating biodiversity change at policy-relevant scales, guiding adaptive conservation responses

Gravitational radiation from gamma-ray bursts as observational opportunities for LIGO and VIRGO

Gamma-ray bursts are believed to originate in core-collapse of massive stars. This produces an active nucleus containing a rapidly rotating Kerr black hole surrounded by a uniformly magnetized torus represented by two counter-oriented current rings. We quantify black hole spin-interactions with the torus and charged particles along open magnetic flux-tubes subtended by the event horizon. A major output of Egw=4e53 erg is radiated in gravitational waves of frequency fgw=500 Hz by a quadrupole mass-moment in the torus. Consistent with GRB-SNe, we find (i) Ts=90s (tens of s, Kouveliotou et al. 1993), (ii) aspherical SNe of kinetic energy Esn=2e51 erg (2e51 erg in SN1998bw, Hoeflich et al. 1999) and (iii) GRB-energies Egamma=2e50 erg (3e50erg in Frail et al. 2001). GRB-SNe occur perhaps about once a year within D=100Mpc. Correlating LIGO/Virgo detectors enables searches for nearby events and their spectral closure density 6e-9 around 250Hz in the stochastic background radiation in gravitational waves. At current sensitivity, LIGO-Hanford may place an upper bound around 150MSolar in GRB030329. Detection of Egw thus provides a method for identifying Kerr black holes by calorimetry.Comment: to appear in PRD, 49

Accretion, Outflows, and Winds of Magnetized Stars

Many types of stars have strong magnetic fields that can dynamically influence the flow of circumstellar matter. In stars with accretion disks, the stellar magnetic field can truncate the inner disk and determine the paths that matter can take to flow onto the star. These paths are different in stars with different magnetospheres and periods of rotation. External field lines of the magnetosphere may inflate and produce favorable conditions for outflows from the disk-magnetosphere boundary. Outflows can be particularly strong in the propeller regime, wherein a star rotates more rapidly than the inner disk. Outflows may also form at the disk-magnetosphere boundary of slowly rotating stars, if the magnetosphere is compressed by the accreting matter. In isolated, strongly magnetized stars, the magnetic field can influence formation and/or propagation of stellar wind outflows. Winds from low-mass, solar-type stars may be either thermally or magnetically driven, while winds from massive, luminous O and B type stars are radiatively driven. In all of these cases, the magnetic field influences matter flow from the stars and determines many observational properties. In this chapter we review recent studies of accretion, outflows, and winds of magnetized stars with a focus on three main topics: (1) accretion onto magnetized stars; (2) outflows from the disk-magnetosphere boundary; and (3) winds from isolated massive magnetized stars. We show results obtained from global magnetohydrodynamic simulations and, in a number of cases compare global simulations with observations.Comment: 60 pages, 44 figure