47 research outputs found
Distributed Domain Propagation
This is the final version. Available on open access from the publisher via the DOI in this record16th International Symposium on Experimental Algorithms (SEA 2017), 21-23 June 2017, London, UKPortfolio parallelization is an approach that runs several solver instances in parallel and terminates when one of them succeeds in solving the problem. Despite itâs simplicity portfolio parallelization has been shown to perform well for modern mixed-integer programming (MIP) and boolean satisfiability problem (SAT) solvers. Domain propagation has also been shown to be a simple technique in modern MIP and SAT solvers that effectively finds additional domain reductions after a variables domain has been reduced. This paper investigates the impact of distributed domain propagation in modern MIP solvers that employ portfolio parallelization. Computational experiments were conducted for two implementations of this parallelization approach. While both share global variable bounds and solutions they communicate differently. In one implementation the communication is performed only at designated points in the solving process and in the other it is performed completely asynchronously. Computational experiments show a positive performance impact of communicating global variable bounds and provide valuable insights in communication strategies for parallel solvers.German Federal Ministry of Education and Researc
Regular and chaotic vibration in a piezoelectric energy harvester
We examine regular and chaotic responses of a vibrational energy harvester composed of a vertical beam and a tip mass. The beam is excited horizontally by a harmonic inertial force while mechanical vibrational energy is converted to electrical power through a piezoelectric patch. The mechanical resonator can be described by single or double well potentials depending on the gravity force from the tip mass. By changing the tip mass we examine bifurcations from single well oscillations, to regular and chaotic vibrations between the potential wells. The appearance of chaotic responses in the energy harvesting system is illustrated by the bifurcation diagram, the corresponding Fourier spectra, the phase portraits, and is confirmed by the 0â1 test. The appearance of chaotic vibrations reduces the level of harvested energy
High-Density Microwell Chip for Culture and Analysis of Stem Cells
With recent findings on the role of reprogramming factors on stem cells, in vitro screening assays for studying (de)-differentiation is of great interest. We developed a miniaturized stem cell screening chip that is easily accessible and provides means of rapidly studying thousands of individual stem/progenitor cell samples, using low reagent volumes. For example, screening of 700,000 substances would take less than two days, using this platform combined with a conventional bio-imaging system. The microwell chip has standard slide format and consists of 672 wells in total. Each well holds 500 nl, a volume small enough to drastically decrease reagent costs but large enough to allow utilization of standard laboratory equipment. Results presented here include weeklong culturing and differentiation assays of mouse embryonic stem cells, mouse adult neural stem cells, and human embryonic stem cells. The possibility to either maintain the cells as stem/progenitor cells or to study cell differentiation of stem/progenitor cells over time is demonstrated. Clonality is critical for stem cell research, and was accomplished in the microwell chips by isolation and clonal analysis of single mouse embryonic stem cells using flow cytometric cell-sorting. Protocols for practical handling of the microwell chips are presented, describing a rapid and user-friendly method for the simultaneous study of thousands of stem cell cultures in small microwells. This microwell chip has high potential for a wide range of applications, for example directed differentiation assays and screening of reprogramming factors, opening up considerable opportunities in the stem cell field
An effector from the Huanglongbing-associated pathogen targets citrus proteases
The citrus industry is facing an unprecedented challenge from Huanglongbing (HLB). All cultivars can be affected by the HLB-associated bacterium âCandidatus Liberibacter asiaticusâ (CLas) and there is no known resistance. Insight into HLB pathogenesis is urgently needed in order to develop effective management strategies. Here, we use Sec-delivered effector 1 (SDE1), which is conserved in all CLas isolates, as a molecular probe to understand CLas virulence. We show that SDE1 directly interacts with citrus papain-like cysteine proteases (PLCPs) and inhibits protease activity. PLCPs are defense-inducible and exhibit increased protein accumulation in CLas-infected trees, suggesting a role in citrus defense responses. We analyzed PLCP activity in field samples, revealing specific members that increase in abundance but remain unchanged in activity during infection. SDE1-expressing transgenic citrus also exhibit reduced PLCP activity. These data demonstrate that SDE1 inhibits citrus PLCPs, which are immune-related proteases that enhance defense responses in plants
Brain Structural Networks Associated with Intelligence and Visuomotor Ability
Increasing evidence indicates that multiple structures in the brain are associated with intelligence
and cognitive function at the network level. The association between the grey matter (GM) structural
network and intelligence and cognition is not well understood. We applied a multivariate approach
to identify the pattern of GM and link the structural network to intelligence and cognitive functions.
Structural magnetic resonance imaging was acquired from 92 healthy individuals. Source-based
morphometry analysis was applied to the imaging data to extract GM structural covariance. We
assessed the intelligence, verbal fluency, processing speed, and executive functioning of the
participants and further investigated the correlations of the GM structural networks with intelligence
and cognitive functions. Six GM structural networks were identified. The cerebello-parietal component
and the frontal component were significantly associated with intelligence. The parietal and frontal
regions were each distinctively associated with intelligence by maintaining structural networks with
the cerebellum and the temporal region, respectively. The cerebellar component was associated
with visuomotor ability. Our results support the parieto-frontal integration theory of intelligence by
demonstrating how each core region for intelligence works in concert with other regions. In addition,
we revealed how the cerebellum is associated with intelligence and cognitive functions