The influence of the hydrologic cycle on the extent of sea ice with climatic implications

The role was analyzed of the hydrologic cycle on the distribution of sea ice, and its influence on forcings and fluxes between the marine environment and the atmosphere. River discharge plays a significant role in degrading the sea ice before any melting occurs elsewhere along the coast. The influence is considered of river discharge on the albedo, thermal balance, and distribution of sea ice. Quantitative atmospheric-hydrologic models are being developed to describe these processes in the coastal zone. Input for the models will come from satellite images, hydrologic data, and field observations. The resulting analysis provides a basis for the study of the significance of the hydrologic cycle throughout the Arctic Basin and its influence on the regional climate as a result of possible climatic scenarios. The area offshore from the Mackenzie River delta was selected as the study area

Investigation to relate the chlorophyll and suspended sediment content in the waters of the lower Chesapeake Bay to ERTS-1 imagery

There are no author-identified significant results in this report

Correlation of ERTS multispectral imagery with suspended matter and chlorophyll in lower Chesapeake Bay

The feasibility of using multispectral satellite imagery to monitor the characteristics of estuarine waters is being investigated. Preliminary comparisons of MSS imagery with suspended matter concentrations, particle counts, chlorophyll, transmittance and bathymetry have been made. Some visual correlation of radiance with particulates and chlorophyll has been established. Effects of bathymetry are present, and their relation to transmittance and radiance is being investigated. Greatest detail in suspended matter is revealed by MSS band 5. Near-surface suspended sediment load and chlorophyll can be observed in bands 6 and 7. Images received to date have partially defined extent and location of high suspensate concentrations. Net quantity of suspended matter in the lower Bay has been decreasing since the inception of the study, and represents the diminution of turbid flood waters carried into the Bay in late September, 1972. The results so far point to the utility of MSS imagery in monitoring estuarine water character for the assessment of siltation, productivity, and water types

Correlation of chlorophyll, suspended matter, and related parameters of waters in the lower Chesapeake Bay area to LANDSAT-1 imagery

The author has identified the following significant results. An effort to relate water parameters of the lower Chesapeake Bay area to multispectral scanner images of LANDSAT 1 has shown that some spectral bands can be correlated to water parameters, and has demonstrated the feasibility of synoptic mapping of estuaries by satellite. Bands 5 and 6 were shown to be useful for monitoring total particles. Band 5 showed high correlation with suspended sediment concentration. Attenuation coefficients monitored continuously by ship along three baselines were cross correlated with radiance values on three days. Improved correlations resulted when tidal conditions were taken into consideration. A contouring program was developed to display sediment variation in the lower Chesapeake Bay from the MSS bands

GenSensor Suite: A Web-Based Tool for the Analysis of Gene and Protein Interactions, Pathways, and Regulation

The GenSensor Suite consists of four web tools for elucidating relationships among genes and proteins. GenPath results show which biochemical, regulatory, or other gene set categories are over- or under-represented in an input list compared to a background list. All common gene sets are available for searching in GenPath, plus some specialized sets. Users can add custom background lists. GenInteract builds an interaction gene list from a single gene input and then analyzes this in GenPath. GenPubMed uses a PubMed query to identify a list of PubMed IDs, from which a gene list is extracted and queried in GenPath. GenViewer allows the user to query one gene set against another in GenPath. GenPath results are presented with relevant P- and q-values in an uncluttered, fully linked, and integrated table. Users can easily copy this table and paste it directly into a spreadsheet or document

Bridging the Divide between Manual Gating and Bioinformatics with the Bioconductor Package flowFlowJo

In flow cytometry, different cell types are usually selected or “gated” by a series of 1- or 2-dimensional geometric subsets of the measurements made on each cell. This is easily accomplished in commercial flow cytometry packages but it is difficult to work computationally with the results of this process. The ability to retrieve the results and work with both them and the raw data is critical; our experience points to the importance of bioinformatics tools that will allow us to examine gating robustness, combine manual and automated gating, and perform exploratory data analysis. To provide this capability, we have developed a Bioconductor package called flowFlowJo that can import gates defined by the commercial package FlowJo and work with them in a manner consistent with the other flow packages in Bioconductor. We present this package and illustrate some of the ways in which it can be used

The seasonal cycle of ocean-atmosphere CO2 Flux in Ryder Bay, West Antarctic Peninsula

Approximately 15 million km2 of the Southern Ocean is seasonally ice covered, yet the processes affecting carbon cycling and gas exchange in this climatically important region remain inadequately understood. Here, 3 years of dissolved inorganic carbon (DIC) measurements and carbon dioxide (CO2) fluxes from Ryder Bay on the west Antarctic Peninsula (WAP) are presented. During spring and summer, primary production in the surface ocean promotes atmospheric CO2 uptake. In winter, higher DIC, caused by net heterotrophy and vertical mixing with Circumpolar Deep Water, results in outgassing of CO2 from the ocean. Ryder Bay is found to be a net sink of atmospheric CO2 of 0.59–0.94 mol C m−2 yr−1 (average of 3 years). Seasonal sea ice cover increases the net annual CO2 uptake, but its effect on gas exchange remains poorly constrained. A reduction in sea ice on the WAP shelf may reduce the strength of the oceanic CO2 sink in this region

Query-Driven Visualization of Time-Varying Adaptive Mesh Refinement Data

The visualization and analysis of AMR-based simulations is integral to the process of obtaining new insight in scientific research. We present a new method for performing query-driven visualization and analysis on AMR data, with specific emphasis on time-varying AMR data. Our work introduces a new method that directly addresses the dynamic spatial and temporal properties of AMR grids which challenge many existing visualization techniques. Further, we present the first implementation of query-driven visualization on the GPU that uses a GPU-based indexing structure to both answer queries and efficiently utilize GPU memory. We apply our method to two different science domains to demonstrate its broad applicability

Iatrogenic Gastric Dilatation: A Rare and Transient Cause of Hepatic-portal Venous Gas

Gas in the portal veins is rare and in most cases is associated with serious diseases and poor clinical outcome. A case of gas in the hepatic-portal veins with gastric dilatation, as shown by CT-scanning for abdominal trauma, is reported. The condition was clinically benign and resolved spontaneously. An abdominal CT scan documented the findings