The Applicability of the Distribution Coefficient, KD, Based on Non-Aggregated Particulate Samples from Lakes with Low Suspended Solids Concentrations

Separate phases of metal partitioning behaviour in freshwater lakes that receive varying degrees of atmospheric contamination and have low concentrations of suspended solids were investigated to determine the applicability of the distribution coefficient, KD. Concentrations of Pb, Ni, Co, Cu, Cd, Cr, Hg and Mn were determined using a combination of filtration methods, bulk sample collection and digestion and Inductively Coupled Plasma-Mass Spectrometry (ICP-MS). Phytoplankton biomass, suspended solids concentrations and the organic content of the sediment were also analysed. By distinguishing between the phytoplankton and (inorganic) lake sediment, transient variations in KD were observed. Suspended solids concentrations over the 6-month sampling campaign showed no correlation with the KD (n = 15 for each metal, p > 0.05) for Mn (r2 = 0.0063), Cu (r2 = 0.0002, Cr (r2 = 0.021), Ni (r2 = 0.0023), Cd (r2 = 0.00001), Co (r2 = 0.096), Hg (r2 = 0.116) or Pb (r2 = 0.164). The results implied that colloidal matter had less opportunity to increase the dissolved (filter passing) fraction, which inhibited the spurious lowering of KD. The findings conform to the increasingly documented theory that the use of KD in modelling may mask true information on metal partitioning behaviour. The root mean square error of prediction between the directly measured total metal concentrations and those modelled based on the separate phase fractions were ± 3.40, 0.06, 0.02, 0.03, 0.44, 484.31, 80.97 and 0.1 μg/L for Pb, Cd, Mn, Cu, Hg, Ni, Cr and Co respectively. The magnitude of error suggests that the separate phase models for Mn and Cu can be used in distribution or partitioning models for these metals in lake water

Animal population estimation using mark-recapture and plant-capture

Mark-recapture is a method of population estimation that involves capturing a number of animals from a population of unknown size on several occasions, and marking those animals that are caught each time. By observing the number of marked animals that are subsequently seen, estimates of the total population size can be made. There are various subclasses of the mark-recapture method called the Otis-class of models (Otis, Burnham, White & Anderson 1978). These relate to the assumed behaviour of the individuals in the target population. More recent work has generalised the theory of mark-recapture to the so-called plant-capture, where a known number of animals are pre-inserted into the target population. Sampling is then carried out as normal, but with additional information coming from knowledge of the number of planted individuals. The theory underpinning plant-capture is less well-developed than mark-recapture, with the difference on population estimation of the former over the latter not often tested. This thesis shows that, under fixed and random sample-size models, the inclusion of plants can improve the mean point population estimation of various estimators. The estimator of Pathak (1964) is generalised to allow for the inclusion of plants into the target population. The results show that mean estimates from most estimators, under most models, can be improved with the inclusion of plants, and the sample standard deviations of the simulations can be reduced. This improvement in mean point population estimation is particularly pronounced when the number of animals captured is low. Sample coverage, which is the proportion of distinct animals caught during sampling, is also often sought by practitioners. Given here is a generalisation of the inverse population estimator of Pathak (1964) to plant-capture and a proposed new inverse population estimator, which can be used as estimates of the coverage of a sample

Environmental compliance assessment for the desulfurization of sulfide mine waste tailings: A case study of Ok Tedi Mine, Papua New Guinea

The effective management of sulfide mine waste tailings is a complex task because of the potential for acid rock drainage to harm aquatic ecosystems. Although previous research has explored the environmental consequences of sulfide mine waste tailings and the potential advantages of desulfurization method, there is a lack of studies examining the environmental compliance of desulfurization efforts. To bridge this knowledge gap, a study was conducted at the Ok Ted Mine to evaluate the environmental compliance of the implemented desulfurization process. Ninety samples of sulfide tailing, desulfurized tailing, and sulfide concentrate were collected and analyzed for geochemical and physical properties. The acid-generating capacities were assessed using the Sobek's static test, whereas the particle size, pH, and recovery were evaluated for the overall performance of the desulfurization process. These findings indicated that the desulfurization process significantly reduced the acid-generating capacity and heavy metal concentrations of the sulfide tailings below the regulatory threshold levels. Therefore, the desulfurization approach employed at the Ok Ted Mine comply with the environmental regulaotry requirments. For further assessment, a study is recommended to evaluate the impact of desulfurization on the ecosystem to predict full extent of biodiversity recovery after mine life

Making the invisible visible: A place for utilizing activity theory within in situ simulation to drive healthcare organizational development?

Peer reviewe

Bottom-up formulations for the multi-criteria decision analysis of oil and gas pipeline decommissioning in the North Sea : Brent field case study

Peer reviewe

Cyclin D1-mediated microRNA expression signature predicts breast cancer outcome

Background: Genetic classification of breast cancer based on the coding mRNA suggests the evolution of distinct subtypes. Whether the non-coding genome is altered concordantly with the coding genome and the mechanism by which the cell cycle directly controls the non-coding genome is poorly understood. Methods: Herein, the miRNA signature maintained by endogenous cyclin D1 in human breast cancer cells was defined. In order to determine the clinical significance of the cyclin D1-mediated miRNA signature, we defined a miRNA expression superset from 459 breast cancer samples. We compared the coding and non-coding genome of breast cancer subtypes. Results: Hierarchical clustering of human breast cancers defined four distinct miRNA clusters (G1-G4) associated with distinguishable relapse-free survival by Kaplan-Meier analysis. The cyclin D1-regulated miRNA signature included several oncomirs, was conserved in multiple breast cancer cell lines, was associated with the G2 tumor miRNA cluster, ERα+ status, better outcome and activation of the Wnt pathway. The coding and non-coding genome were discordant within breast cancer subtypes. Seed elements for cyclin D1-regulated miRNA were identified in 63 genes of the Wnt signaling pathway including DKK. Cyclin D1 restrained DKK1 via the 3\u27UTR. In vivo studies using inducible transgenics confirmed cyclin D1 induces Wnt-dependent gene expression. Conclusion: The non-coding genome defines breast cancer subtypes that are discordant with their coding genome subtype suggesting distinct evolutionary drivers within the tumors. Cyclin D1 orchestrates expression of a miRNA signature that induces Wnt/β-catenin signaling, therefore cyclin D1 serves both upstream and downstream of Wnt/β-catenin signaling

Acetylation-defective mutant of Pparγ is associated with decreased lipid synthesis in breast cancer cells.

In our prior publications we characterized a conserved acetylation motif (K(R)xxKK) of evolutionarily related nuclear receptors. Recent reports showed that peroxisome proliferator activated receptor gamma (PPARγ) deacetylation by SIRT1 is involved in delaying cellular senescence and maintaining the brown remodeling of white adipose tissue. However, it still remains unknown whether lysyl residues 154 and 155 (K154/155) of the conserved acetylation motif (RIHKK) in Pparγ1 are acetylated. Herein, we demonstrate that Pparγ1 is acetylated and regulated by both endogenous TSA-sensitive and NAD-dependent deacetylases. Acetylation of lysine 154 was identified by mass spectrometry (MS) while deacetylation of lysine 155 by SIRT1 was confirmed by in vitro deacetylation assay. An in vivo labeling assay revealed K154/K155 as bona fide acetylation sites. The conserved acetylation sites of Pparγ1 and the catalytic domain of SIRT1 are both required for the interaction between Pparγ1 and SIRT1. Sirt1 and Pparγ1 converge to govern lipid metabolism in vivo. Acetylation-defective mutants of Pparγ1 were associated with reduced lipid synthesis in ErbB2 overexpressing breast cancer cells. Together, these results suggest that the conserved lysyl residues K154/K155 of Pparγ1 are acetylated and play an important role in lipid synthesis in ErbB2-positive breast cancer cells

Risk, vulnerability, resilience and adaptive management in the water sector

Developments in the theories and applications of risk, vulnerability, resilience and adaptive management within the context of urban water services are described and evaluated, facilitating consensus on their interpretation and subsequent management approaches. A synopsis of current thinking in the literature and the models, tools and techniques used in the application of risk, vulnerability, resilience and adaptive management concepts is presented. Representatives from two European water service providers were interviewed to explore whether and how these concepts are understood and interpreted within their organisations. This report presents evidence that the concepts of risk and (perhaps to a lesser extent) vulnerability are more widely applied and embedded in the water services sector than resilience and adaptive management. Discrepancies in how resilience is characterised were also observed. The engineering-based approach to resilience focuses on improving ?critical infrastructure resilience?, whereas the socio-ecological approach seeks to improve flexibility and foster creative re-organisation of complex systems. A case for further exploration of the latter, socio-ecological, concept and its operational aspects in the context of urban water services is provided.Smith, H.; Ugarelli, R.; Van Der Zouwen, M.; Allen, R.; Gormley, AM.; Segrave, A. (2013). Risk, vulnerability, resilience and adaptive management in the water sector. http://hdl.handle.net/10251/4662

HTLV-1 clonality during chronic infection and BLV clonality during primary infection

peer reviewedaudience: researcherHTLV-1 clonality during chronic infection and BLV clonality during primary infection Nicolas A Gillet1,2*, Carol Hlela1, Tine Verdonck3, Eduardo Gotuzzo3, Daniel Clark3, Sabrina Rodriguez2, Nirav Malani4, Anat Melamed1, Niall Gormley5, Richard Carter5, David Bentley5, Charles Berry6, Frederic D Bushman4, Graham P Taylor7, Luc Willems2, Charles R M Bangham1 1Department of Immunology, Wright-Fleming Institute, Imperial College London, London, W2 1PG, UK. 2Molecular and Cellular Epigenetics, Interdisciplinary Cluster for Applied Genoproteomics (GIGA) of University of Liège (ULg), Liège, 4000, Belgium. 3Instituto de Medicina Tropical Alexander von Humboldt, Universidad Peruana Cayetano Heredia, Lima, Peru. 4Department of Microbiology, University of Pennsylvania School of Medicine, Pennsylvania, Philadelphia, PA, 19104, USA. 5Illumina, Chesterford Research Park, Essex, Little Chesterford, CB10 1XL, UK. 6University of California, California, La Jolla San Diego, CA, 92093-0901, USA. 7Department of Genitourinary Medicine and Communicable Diseases, Wright-Fleming Institute, Imperial College London, London, W2 1PG, UK. HTLV-1 persists by driving clonal proliferation of infected T-lymphocytes. A high proviral load predisposes to the inflammatory and malignant diseases associated with HTLV-1. Yet the reasons for the remarkable variation within and between individuals in the abundance of HTLV-1-infected clones remain unknown. We demonstrate that negative selection dominates during chronic infection, favouring establishment of proviruses integrated in transcriptionally silenced DNA: this selection is significantly stronger in asymptomatic carriers. We postulated that this selection occurred mainly during the primary infection. We are testing this hypothesis in an animal model by studying the BLV clonality during the primary infection in cows. By measuring the proviral load, the anti-BLV immune response and the BLV clonality we aim to quantify the impact of the immune response on the rate of infectious spread and on the selection of proviruses inserted in a particular genomic environment. Co-infection with Strongyloides stercoralis or Staphylococcus appears to be another risk factor for the development of HTLV-1 associated diseases. We observed that HTLV-1 clonality is altered by co-infection with these pathogens with an increase of both the number and the abundance of the infected T-cell clones. The genomic characteristics of the proviral integration sites in the most abundant clones differ significantly between co-infected individuals and those with HTLV-1 alone, implying the existence of different selection forces in co-infected patients. The rate of appearance of new clones in patients co-infected with Strongyloides stercoralis is higher than in patients with HTLV-1 alone. By comparing skin lesions and blood samples from patients with Infective Dermatitis associated with HTLV-1 (IDH), we observed a significant proportion of distinct infected clones between the two compartments. The skin lesions seem to be a site for HTLV-1 infectious spread