Trees at the Amazonia-Cerrado transition are approaching high temperature thresholds

Land regions are warming rapidly. While in a warming world at extra-tropical latitudes vegetation adapted to higher temperatures may move in from lower latitudes this is not possible in the tropics. Thus, the limits of plant functioning will determine the nature and composition of future vegetation. The most temperature sensitive component of photosynthesis and a key component of plants is Photosystem II. Here we report the thermal safety margin (difference between Photosystem II thermotolerance (T50) and maximum leaf temperature) during the beginning of the dry season for four tree species co-occurring across the forest-savanna transition zone in Brazil, a region which has warmed particularly rapidly over the recent decades. The species selected are evergreen in forests but deciduous in savannas. We find that thermotolerance declines with growth temperature larger than >40 °C for individuals in the savannas. Current maximum leaf temperatures exceed T50 in some species and will exceed T50 in a 2.5 °C warmer world in most species evaluated. Despite plasticity in leaf thermal traits to increase leaf cooling in hotter environments, the results show this is not sufficient to maintain a safe thermal safety margin in hotter savannas. Overall, the results suggest that forest species may become increasingly deciduous and savanna-like in the future

Intraspecific variation in leaf traits facilitates the occurrence of trees at the Amazonia–Cerrado transition

The ability of plant species to adjust key functional traits through intraspecific variation may determine their success in persisting on our planet in the future, especially in unstable habitats, such as the Amazonia–Cerrado transition zone. We assessed intraspecific variation in 12 leaf morphological and anatomical traits for four tree species along a savanna–forest gradient, including rocky cerrado, typical cerrado and woodland savanna. Generally, all evaluated species showed great intraspecific variation. Our findings demonstrate that trees occurring in the woodland savanna are potentially more vulnerable to climate change, while in the cerrado the individuals presented higher tolerance to water deficit and high temperatures. Trees occurring in open-canopy habitats showed smaller stomata, higher stomata and trichome densities, compared to the same species growing in the woodland savanna. In contrast, the individuals in the woodland savanna shift leaf traits to increase resource acquisition (e.g. light), showing higher specific leaf area and larger stomata, compared to cerrado individuals. We have shown that vegetation-induced shifts in leaf morphological and anatomical traits are a major effect in within-species variability, with consequences for persistence and tolerance of species under future climatic conditions

Association of Group A Streptococcus Exposure and Exacerbations of Chronic Tic Disorders

Objective: To examine prospectively the association between group A Streptococcus (GAS) pharyngeal exposures and exacerbations of tics in a large multicenter population of youth with chronic tic disorders (CTD) across Europe. Methods: We followed up 715 children with CTD (age 10.7 ± 2.8 years, 76.8% boys), recruited by 16 specialist clinics from 9 countries, and followed up for 16 months on average. Tic, obsessive-compulsive symptom (OCS), and attention-deficit/hyperactivity disorder (ADHD) severity was assessed during 4-monthly study visits and telephone interviews. GAS exposures were analyzed using 4 possible combinations of measures based on pharyngeal swab and serologic testing. The associations between GAS exposures and tic exacerbations or changes of tic, OC, and ADHD symptom severity were measured, respectively, using multivariate logistic regression plus multiple failure time analyses and mixed effects linear regression. Results: A total of 405 exacerbations occurred in 308 of 715 (43%) participants. The proportion of exacerbations temporally associated with GAS exposure ranged from 5.5% to 12.9%, depending on GAS exposure definition. We did not detect any significant association of any of the 4 GAS exposure definitions with tic exacerbations (odds ratios ranging between 1.006 and 1.235, all p values >0.3). GAS exposures were associated with longitudinal changes of hyperactivity-impulsivity symptom severity ranging from 17% to 21%, depending on GAS exposure definition. Conclusions: This study does not support GAS exposures as contributing factors for tic exacerbations in children with CTD. Specific workup or active management of GAS infections is unlikely to help modify the course of tics in CTD and is therefore not recommended

European Multicentre Tics in Children Studies (EMTICS): protocol for two cohort studies to assess risk factors for tic onset and exacerbation in children and adolescents

Genetic predisposition, autoimmunity and environmental factors [e.g. pre- and perinatal difficulties, Group A Streptococcal (GAS) and other infections, stress-inducing events] might interact to create a neurobiological vulnerability to the development of tics and associated behaviours. However, the existing evidence for this relies primarily on small prospective or larger retrospective population-based studies, and is therefore still inconclusive. This article describes the design and methodology of the EMTICS study, a longitudinal observational European multicentre study involving 16 clinical centres, with the following objectives: (1) to investigate the association of environmental factors (GAS exposure and psychosocial stress, primarily) with the onset and course of tics and/or obsessive-compulsive symptoms through the prospective observation of at-risk individuals (ONSET cohort: 260 children aged 3-10 years who are tic-free at study entry and have a first-degree relative with a chronic tic disorder) and affected individuals (COURSE cohort: 715 youth aged 3-16 years with a tic disorder); (2) to characterise the immune response to microbial antigens and the host's immune response regulation in association with onset and exacerbations of tics; (3) to increase knowledge of the human gene pathways influencing the pathogenesis of tic disorders; and (4) to develop prediction models for the risk of onset and exacerbations of tic disorders. The EMTICS study is, to our knowledge, the largest prospective cohort assessment of the contribution of different genetic and environmental factors to the risk of developing tics in putatively predisposed individuals and to the risk of exacerbating tics in young individuals with chronic tic disorders

A computational framework to integrate high-throughput '-omics' datasets for the identification of potential mechanistic links

International audienceWe recently presented a three-pronged association study that integrated human intestinal microbiome data derived from shotgun-based sequencing with untargeted serum metabolome data and measures of host physiology. Metabolome and microbiome data are high dimensional, posing a major challenge for data integration. Here, we present a step-by-step computational protocol that details and discusses the dimensionality-reduction techniques used and methods for subsequent integration and interpretation of such heterogeneous types of data. Dimensionality reduction was achieved through a combination of data normalization approaches, binning of co-abundant genes and metabolites, and integration of prior biological knowledge. The use of prior knowledge to overcome functional redundancy across microbiome species is one central advance of our method over available alternative approaches. Applying this framework, other investigators can integrate various '-omics' readouts with variables of host physiology or any other phenotype of interest (e.g., connecting host and microbiome readouts to disease severity or treatment outcome in a clinical cohort) in a three-pronged association analysis to identify potential mechanistic links to be tested in experimental settings. Although we originally developed the framework for a human metabolome-microbiome study, it is generalizable to other organisms and environmental metagenomes, as well as to studies including other -omics domains such as transcriptomics and proteomics. The provided R code runs in similar to 1 h on a standard PC