Assessing the response of nematode communities to climate change-driven warming : a microcosm experiment

Biodiversity has diminished over the past decades with climate change being among the main responsible factors. One consequence of climate change is the increase in sea surface temperature, which, together with long exposure periods in intertidal areas, may exceed the tolerance level of benthic organisms. Benthic communities may suffer structural changes due to the loss of species or functional groups, putting ecological services at risk. In sandy beaches, free-living marine nematodes usually are the most abundant and diverse group of intertidal meiofauna, playing an important role in the benthic food web. While apparently many functionally similar nematode species co-exist temporally and spatially, experimental results on selected bacterivore species suggest no functional overlap, but rather an idiosyncratic contribution to ecosystem functioning. However, we hypothesize that functional redundancy is more likely to occur and observe when taking into account the entire diversity of natural assemblages. Therefore, we conducted a microcosm experiment with two natural communities drawn directly from their environment to assess their stress response to elevated temperature. The two communities differed in diversity (high [HD] vs. low [LD]) and environmental origin (harsh vs. moderate conditions). We assessed their stress resistance to the experimental treatment in terms of species and diversity changes, and their function in terms of abundance, individual and community biomass, and trophic diversity. According to the Insurance Hypothesis (IH), we hypothesized that the HD community would cope better with the stressful treatment due to the species functional overlap, whereas the LD community functioning would benefit from species better adapted to harsh conditions. Our results indicate no evidence of functional redundancy in the studied nematofaunal communities. The species loss was more prominent and size specific in the HD; large predators and omnivores were lost, which may have important consequences for the benthic food web.Yet, we found some evidence for alternative diversity–ecosystem functioning relationships such as the Rivets and the Idiosyncrasy Model

Smooth-Particle Phase Stability with density and density-gradient potentials

Stable fluid and solid particle phases are essential to the simulation of continuum fluids and solids using Smooth Particle Applied Mechanics. We show that density-dependent potentials, such as Phi=(1/2)Sum (rho-rho_0)^2, along with their corresponding constitutive relations, provide a simple means for characterizing fluids and that a special stabilization potential, Phi=(1/2)Sum (delrho)^2, not only stabilizes crystalline solid phases (or meshes) but also provides a surface tension which is missing in the usual density-dependent-potential approach. We illustrate these ideas for two-dimensional square, triangular, and hexagonal lattices.Comment: 10 pages, 5 figure

TRAPHIC - Radiative Transfer for Smoothed Particle Hydrodynamics Simulations

We present TRAPHIC, a novel radiative transfer scheme for Smoothed Particle Hydrodynamics (SPH) simulations. TRAPHIC is designed for use in simulations exhibiting a wide dynamic range in physical length scales and containing a large number of light sources. It is adaptive both in space and in angle and can be employed for application on distributed memory machines. The commonly encountered computationally expensive scaling with the number of light sources in the simulation is avoided by introducing a source merging procedure. The (time-dependent) radiative transfer equation is solved by tracing individual photon packets in an explicitly photon-conserving manner directly on the unstructured grid traced out by the set of SPH particles. To accomplish directed transport of radiation despite the irregular spatial distribution of the SPH particles, photons are guided inside cones. We present and test a parallel numerical implementation of TRAPHIC in the SPH code GADGET-2, specified for the transport of mono-chromatic hydrogen-ionizing radiation. The results of the tests are in excellent agreement with both analytic solutions and results obtained with other state-of-the-art radiative transfer codes.Comment: 31 pages, 20 figures. Accepted for publication in MNRAS. Revised version includes many clarifications and a new time-dependent radiative transfer calculation (fig. 19

A Density Independent Formulation of Smoothed Particle Hydrodynamics

The standard formulation of the smoothed particle hydrodynamics (SPH) assumes that the local density distribution is differentiable. This assumption is used to derive the spatial derivatives of other quantities. However, this assumption breaks down at the contact discontinuity. At the contact discontinuity, the density of the low-density side is overestimated while that of the high-density side is underestimated. As a result, the pressure of the low (high) density side is over (under) estimated. Thus, unphysical repulsive force appears at the contact discontinuity, resulting in the effective surface tension. This tension suppresses fluid instabilities. In this paper, we present a new formulation of SPH, which does not require the differentiability of density. Instead of the mass density, we adopt the internal energy density (pressure), and its arbitrary function, which are smoothed quantities at the contact discontinuity, as the volume element used for the kernel integration. We call this new formulation density independent SPH (DISPH). It handles the contact discontinuity without numerical problems. The results of standard tests such as the shock tube, Kelvin-Helmholtz and Rayleigh-Taylor instabilities, point like explosion, and blob tests are all very favorable to DISPH. We conclude that DISPH solved most of known difficulties of the standard SPH, without introducing additional numerical diffusion or breaking the exact force symmetry or energy conservation. Our new SPH includes the formulation proposed by Ritchie & Thomas (2001) as a special case. Our formulation can be extended to handle a non-ideal gas easily.Comment: 24 pages, 21 figures. Movies and high resolution figures are available at http://v1.jmlab.jp/~saitoh/sph/index.htm