Combined effects of extrinsic and intrinsic factors on otolith chemistry: Implications for environmental reconstructions

Otolith chemistry is widely used to understand patterns of fish movement and habitat use, with significant progress made in understanding the influence of environmental factors on otolith elemental uptake. However, few studies consider the interactive effect that environmental and genetic influences have on otolith chemistry. This study assessed the influence of salinity, temperature, and genetics on the incorporation of three key elements (strontium (Sr), barium (Ba), and magnesium (Mg)) into the otoliths of two discrete stocks of mulloway (Argyrosomus japonicus) fingerlings reared in captivity. Elemental analysis via laser ablation inductively coupled – plasma mass spectrometry found that stock (genetics) had a significant interactive effect on otolith Sr:Ca (salinity × temperature × stock) and Ba:Ca (salinity × stock), but did not affect Mg:Ca incorporation. Mg:Ca showed a positive relationship with temperature for both stocks. The incorporation of some elements into the otoliths of fish is the result of complex interactions between extrinsic and intrinsic factors. These findings highlight the necessity to also consider stock along with environmental variables when using trace elemental signatures to reconstruct the environmental histories of fish.Thomas C. Barnes, Bronwyn M. Gillander

Direct radiocarbon dating of fish otoliths from mulloway (Argyrosomus japonicus) and black bream (Acanthopagrus butcheri) from Long Point, Coorong, South Australia

Accelerator Mass Spectrometry (AMS) radiocarbon dates (n=20) determined on fish otoliths from mulloway (Argyrosomus japonicus) and black bream (Acanthopagrus butcheri) are reported from five sites at Long Point, Coorong, South Australia. The dates range from 2938–2529 to 326–1 cal. BP, extending the known period of occupation of Long Point. Previous dating at the sites indicated intensive occupation of the area from 2455–2134 cal. BP. Results provide a detailed local chronology for the region, contributing to a more comprehensive understanding of Aboriginal use of Ngarrindjeri lands and waters. This study validates the use of fish otoliths for radiocarbon dating and reveals how dating different materials can result in different midden chronologies

Reconciling differences in natural tags to infer demographic and genetic connectivity in marine fish populations

Processes regulating population connectivity are complex, ranging from extrinsic environmental factors to intrinsic individual based features, and are a major force shaping the persistence of fish species and population responses to harvesting and environmental change. Here we developed an integrated assessment of demographic and genetic connectivity of European flounder Platichthys flesus in the northeast Atlantic (from the Norwegian to the Portuguese coast) and Baltic Sea. Specifically, we used a Bayesian infinite mixture model to infer the most likely number of natal sources of individuals based on otolith near core chemical composition. Simultaneously, we characterised genetic connectivity via microsatellite DNA markers, and evaluated how the combined use of natural tags informed individual movement and long-term population exchange rates. Individual markers provided different insights on movement, with otolith chemistry delineating Norwegian and Baltic Sea sources, whilst genetic markers showed a latitudinal pattern which distinguished southern peripheral populations along the Iberian coast. Overall, the integrated use of natural tags resulted in outcomes that were not readily anticipated by individual movement or gene flow markers alone. Our ecological and evolutionary approach provided a synergistic view on connectivity, which will be paramount to align biological and management units and safeguard species’ biocomplexityFundação para a Ciência e a Tecnologia | Ref. UID/MAR/04292/2013Fundação para a Ciência e a Tecnologia | Ref. PTDC/AAG-GLO/5849/2014Fundação para a Ciência e a Tecnologia | Ref. PTDC/MAR-EST/2098/201

Consequences of “natural” disasters on aquatic life and habitats

“Natural” disasters (also known as geophysical disasters) involve physical processes that have a direct or indirect impact on humans. These events occur rapidly and may have severe consequences for resident flora and fauna as their habitat undergoes dramatic and sudden change. Although most studies have focused on the impact of natural disasters on humans and terrestrial systems, geophysical disasters can also impact aquatic ecosystems. Here, we provide a synthesis on the effects of the most common and destructive geophysical disasters on aquatic systems (life and habitat). Our approach spanned realms (i.e., freshwater, estuarine, and marine) and taxa (i.e., plants, vertebrates, invertebrates, and microbes) and included floods, droughts, wildfires, hurricanes/cyclones/typhoons, tornadoes, dust storms, ice storms, avalanches (snow), landslides, volcanic eruptions, earthquakes (including limnic eruptions), tsunamis, and cosmic events. Many geophysical disasters have dramatic effects on aquatic systems. The evidence base is somewhat limited for some natural disasters because transient events (e.g., tornadoes and floods) are difficult to study. Most natural disaster studies focus on geology/geomorphology and hazard assessment for humans and infrastructure. However, the destruction of aquatic systems can impact humans indirectly through loss of food security, cultural services, or livelihoods. Many geophysical disasters interact in complex ways (e.g., wildfires often lead to landslides and flooding) and can be magnified or otherwise mediated by human activities. Our synthesis reveals that geophysical events influence aquatic ecosystems, often in negative ways, yet systems can be resilient provided that effects are not compounded by anthropogenic stressors. It is difficult to predict or prevent geophysical disasters but understanding how aquatic ecosystems are influenced by geophysical events is important given the inherent connection between peoples and aquatic ecosystems.acceptedVersio

Diverse migration tactics of fishes within the large tropical Mekong River system

Fish often migrate to feed, reproduce and seek refuge from predators and prevailing environmental conditions. As a result, migration tactics often vary among species based on a diversity of life history needs, although variation within species is increasingly being recognised as important to population resilience. In this study, within- and among-species diversity in life history migratory tactics of six Mekong fish genera was examined using otolith microchemistry to explore diadromous and potamodromous traits. Two species were catadromous and one species was an estuarine resident, while the remaining three species were facultative in their migration strategies, with up to four tactics within a single species. Migrant and resident contingents co-existed within the same species. Management, conservation and mitigation strategies that maintain connectivity in large tropical rivers, such as effective fishway design, should consider a diversity of migration tactics at the individual level for improved outcomes

Water and otolith chemistry: implications for discerning estuarine nursery habitat use of a juvenile flatfish

Variations in otolith elemental composition are widely used to reconstruct fish movements. However, reconstructing habitat use and environmental histories of fishes within estuaries is still a major challenge due to the dynamic nature of these coastal environments. In this study, we performed a laboratory experiment to investigate the effects of variations in salinity (three levels; 5, 18, 30) and temperature (two levels; 16, 21 C) on the otolith elemental composition (Mg:Ca, Mn:Ca, Sr:Ca, Ba:Ca) of juvenile Senegalese sole Solea senegalensis. Temperature and salinity treatments mirrored the natural conditions of the estuarine habitats occupied by juvenile Senegalese sole, thereby providing information on the applicability of otolith microchemistry to reconstruct habitat use patterns within estuarine nurseries, where individual fish move across complex salinity and temperature gradients. While Sr:Ca and Ba:Ca in otoliths were both positively related to salinity, no temperature effect was observed. Partition coefficients, proxies for element incorporation rates increased with increasing salinity for Sr (DSr) and Ba (DBa). In contrast, salinity and temperature had little influence on otolith Mn:Ca and Mg:Ca, supporting physiological control on the incorporation of these elements. Our results are a stepping stone for the interpretation of otolith chemical profiles for fish collected in their natural habitats and contribute to better understanding the processes involved in otolith element incorporation.info:eu-repo/semantics/publishedVersio

A Multi-Gene Region Targeted Capture Approach to Detect Plant DNA in Environmental Samples: A Case Study From Coastal Environments

Published: 25 October 2021Metabarcoding of plant DNA recovered from environmental samples, termed environmental DNA (eDNA), has been used to detect invasive species, track biodiversity changes, and reconstruct past ecosystems. The P6 loop of the trnL intron is the most widely utilised gene region for metabarcoding plants due to the short fragment length and subsequent ease of recovery from degraded DNA, which is characteristic of environmental samples. However, the taxonomic resolution for this gene region is limited, often precluding species level identification. Additionally, targeting gene regions using universal primers can bias results as some taxa will amplify more effectively than others. To increase the ability of DNA metabarcoding to better resolve flowering plant species (angiosperms) within environmental samples, and reduce bias in amplification, we developed a multi-gene targeted capture method that simultaneously targets 20 chloroplast gene regions in a single assay across all flowering plant species. Using this approach, we effectively recovered multiple chloroplast gene regions for three species within artificial DNA mixtures down to 0.001 ng/mL of DNA. We tested the detection level of this approach, successfully recovering target genes for 10 flowering plant species. Finally, we applied this approach to sediment samples containing unknown compositions of eDNA and confidently detected plant species that were later verified with observation data. Targeting multiple chloroplast gene regions in environmental samples, enabled species-level information to be recovered from complex DNA mixtures. Thus, the method developed here, confers an improved level of data on community composition, which can be used to better understand flowering plant assemblages in environmental samples.Nicole R. Foster, Kor-jent van Dijk, Ed Biffin, Jennifer M. Young, Vicki A. Thomson, Bronwyn M. Gillanders, Alice R. Jones and Michelle Waycot