Inferring functional extinction based on sighting records

© The Author(s), 2016. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biological Conservation 199 (2016): 84-87, doi:10.1016/j.biocon.2016.04.034.The term functional extinction is used to describe a permanent failure of reproduction or recruitment in a population. Functional extinction results in a truncation of the age distribution, but this can be very difficult to detect in poorly studied populations. Here, we describe a novel statistical method for detecting functional extinction based on a sighting record of individuals of known or estimated ages. The method is based on a simple population dynamics model and simulation results show that it works well even with limited data. The method is illustrated using a sighting record of the ship sturgeon (Acipenser nudiventris) in the Danube River. The results indicate that this population is functionally extinct, most likely by 2002. Management implications of this finding are discussed.The authors also acknowledge the sponsorship provided by the Alexander von Humboldt Foundation and the Federal German Ministry for Education and Research, as well as the support by the Project No. 173045, funded by the Ministry of Education, Science and Technological Development of the Republic of Serbia.2017-05-1

Science responses to IUCN Red Listing

The IUCN Red List of Threatened Species is often advocated as a tool to assist decision-making in conservation investment and research focus. It is frequently suggested that research efforts should prioritize species in higher threat categories and those that are Data Deficient (DD). We assessed the linkage between IUCN listing and research effort in DD and Critically Endangered (CR) species, two groups generally advocated as research priorities. The analysis of the change in the research output following species classification indicated a listing effect in DD species, while such effect was observed in only a minority of CR species groups. DD species, while chronically understudied, seem to be recognized as research priorities, while research effort for endangered species appears to be driven by various factors other than the IUCN listing. Optimized conservation research focus would require international science planning efforts, harmonized through international mechanisms and promoted by financial and other incentives

Diversity of immunoglobulin light chain genes in non-teleost ray-finned fish uncovers IgL subdivision into five ancient isotypes

<p>The aim of this study was to fill important gaps in the evolutionary history of immunoglobulins by examining the structure and diversity of IgL genes in non-teleost ray-finned fish. First, based on the bioinformatic analysis of recent transcriptomic and genomic resources, we experimentally characterized the IgL genes in the chondrostean fish, Acipenser ruthenus (sterlet). We show that this species has three loci encoding IgL kappa-like chains with a translocon-type gene organization and a single VJC cluster, encoding homogeneous lambda-like light chain. In addition, sterlet possesses sigma-like VL and J-CL genes, which are transcribed separately and both encode protein products with cleavable leader peptides. The Acipenseriformes IgL dataset was extended by the sequences mined in the databases of species belonging to other non-teleost lineages of ray-finned fish: Holostei and Polypteriformes. Inclusion of these new data into phylogenetic analysis showed a clear subdivision of IgL chains into five groups. The isotype described previously as the teleostean IgL lambda turned out to be a kappa and lambda chain paralog that emerged before the radiation of ray-finned fish. We designate this isotype as lambda-2. The phylogeny also showed that sigma-2 IgL chains initially regarded as specific for cartilaginous fish are present in holosteans, polypterids, and even in turtles. We conclude that there were five ancient IgL isotypes, which evolved differentially in various lineages of jawed vertebrates.</p

Paddlefish (Polyodon spathula) in Europe: An aquaculture species and a potential invader

The paddlefish (Polyodon spathula) was first introduced to Europe in 1974, mainly due to its potential for rearing in natural polyculture ponds and large temperate reservoirs. The information on the history of paddlefish aquaculture efforts in Europe is scarce, as well as data on current paddlefish aquaculture status and trends. In addition, there is a lack of data on its presence and potential establishment in the wild, while its invasive potential and associated risks and impacts are largely unknown. In order to evaluate its current status in Europe, we conducted a survey among scientists, aquaculture producers and other stakeholders, and reviewed literature and data on the Internet. Based on the results obtained, we discuss the potential and the challenges in European paddlefish aquaculture development, and analyze paddlefish invasive potential and risks associated with its naturalization. Paddlefish aquaculture is well established only regionally in Europe, but offers relatively high potential for further development in pond farms. Nevertheless, future development will require careful planning, especially regarding market development and improved marketing strategies. While paddlefish likely represents a low-risk invader, improved control and reporting on trade and intentional and unintentional releases will be required. Given the lack of knowledge on potential impacts following its introduction, due caution seems highly advisable.This is the peer reviewed version of the following article: Jarić I, Bronzi P, Cvijanović G, Lenhardt M, Smederevac-Lalić M, Gessner J. Paddlefish (Polyodon spathula) in Europe: An aquaculture species and a potential invader. J Appl Ichthyol. 2018, which has been published in final form at [http://doi.org/10.1111/jai.13672]. This article may be used for non-commercial purposes in accordance with Wiley Terms and Conditions for Self-Archiving

Potentially threatened: a Data Deficient flag for conservation management

Data Deficient species (DD) comprise a significant portion of the total number of species listed within the IUCN Red List. Although they are not classified within one of the threat categories, they may still face high extinction risks. However, due to limited data available to infer their extinction risk reliably, it is unlikely that the assessment of the true status of Data Deficient species would be possible before many species decline to extinction. An appropriate measure to resolve these problems would be to introduce a flag of potentially threatened species within the Data Deficient category [i.e., DD(PT)]. Such a flag would represent a temporary Red List status for listed Data Deficient species that are, based on the available direct evidence and/or indirect indices, likely to be assigned to one of the threat categories, but where current data remains insufficient for a complete classification. The use of such a flag could increase the focus of the scientific community and conservation decision-makers on such species, thus avoiding the risk that necessary conservation measures are implemented too late. As such, establishment of the DD(PT) category as a kind of alarm for priority species could be beneficial

On the overlap between scientific and societal taxonomic attentions — Insights for conservation

Attention directed at different species by society and science is particularly relevant within the field of conservation, as societal preferences will strongly impact support for conservation initiatives and their success. Here, we assess the association between societal and research interests in four charismatic and threatened species groups, derived from a range of different online sources and social media platforms as well as scientific publications. We found a high level of concordance between scientific and societal taxonomic attention, which was consistent among assessed species groups and media sources. Results indicate that research is apparently not as disconnected from the interests of society as it is often reproached, and that societal support for current research objectives should be adequate. While the high degree of similarity between scientific and societal interest is both striking and satisfying, the dissimilarities are also interesting, as new scientific findings may constitute a constant source of novel interest for the society. In that respect, additional efforts will be necessary to draw scientific and societal focus towards less charismatic species that are in urgent need of research and conservation attention

Expression Patterns of Atlantic Sturgeon (Acipenser oxyrinchus) During Embryonic Development

During teleost ontogeny the larval and embryonic stages are key stages, since failure during this period of tissue differentiation may cause malformations, developmental delays, poor growth, and massive mortalities. Despite the rapid advances in sequencing technologies, the molecular background of the development of economical important but endangered fish species like the Atlantic sturgeon (Acipenser oxyrinchus) has not yet been thoroughly investigated. The current study examines the differential expression of transcripts involved in embryonic development of the Atlantic sturgeon. Addressing this goal, a reference transcriptome comprising eight stages was generated using Illumina HiSeq 2500 platform. The constructed de novo assembly counted to 441,092 unfiltered and 179,564 filtered transcripts. Subsequently, the expression profile of four developmental stages ranging from early (gastrula) to late stages of pre-larval development (2 dph) were investigated applying Illumina MiSeq platform. Differential expression analysis revealed distinct expression patterns among stages, especially between the two early and the two later stages. Transcripts up-regulated at the two early stages were mainly enriched in transcripts linked to developmental processes while transcripts expressed at the last two stages were mainly enriched in transcripts important to muscle contraction. Furthermore important stage specific expression has been detected for the hatching stage with transcripts enriched in molecule transport and for the 2 dph stage with transcripts enriched in visual perception and lipid digestion. Our investigation represents a significant contribution to the understanding of Atlantic sturgeon embryonic development and transcript characterization along with the differential expression results will significantly contribute to sturgeon research and aquaculture