Proton and cadmium adsorption by the archaeon Thermococcus zilligii: Generalising the contrast between thermophiles and mesophiles as sorbents

Adsorption by microorganisms can play a significant role in the fate and transport of metals in natural systems. Surface complexation models (SCMs) have been applied extensively to describe metal adsorption by mesophilic bacteria, and several recent studies have extended this framework to thermophilic bacteria. We conduct acid-base titrations and batch experiments to characterise proton and Cd adsorption onto the thermophilic archaeon Thermococcus zilligii. The experimental data and the derived SCMs indicate that the archaeon displays significantly lower overall sorption site density compared to previously studied thermophilic bacteria such Anoxybacillus flavithermus, Geobacillus stearothermophilus, G. thermocatenulatus, and Thermus thermophilus. The thermophilic bacteria and archaea display lower sorption site densities than the mesophilic microorganisms that have been studied to date, which points to a general pattern of total concentration of cell wall adsorption sites per unit biomass being inversely correlated to growth temperature

Consistency of projected drought over the Sahel with changes in the monsoon circulation and extremes in a regional climate model projections

As a step toward an increased understanding of climate change over West Africa, in this paper we analyze the relationship between rainfall changes and monsoon dynamics in high-resolution regional climate model experiments performed using the Regional Climate Model (RegCM3). Multidecadal simulations are carried out for present-day and future climate conditions under increased greenhouse gas forcing driven by the global climate model European Center/Hamburg 5 (ECHAM5). Compared to the present day, the future scenario simulation produces drier conditions over the Sahel and wetter conditions over orographic areas. The Sahel drying is accompanied by a weaker monsoon flow, a southward migration and strengthening of the African Easterly Jet, a weakening of the Tropical Easterly Jet, a decrease of the deep core of ascent between the jets, and reduced African Easterly Wave activity. These circulation changes are characteristics of dry periods over the Sahel and are similar to the conditions found in the late twentieth century observed drought over the region. Changes in extreme events suggest that the drier conditions over the Sahel are associated with more frequent occurrences of drought periods. The projected drought over the Sahel is thus physically consistent with changes in the monsoon circulation and the extreme indices (maximum dry spell length and 5 day precipitation)

Seasonal cycle of desert aerosols in western Africa: analysis of the coastal transition with passive and active sensors

The impact of desert aerosols on climate, atmospheric processes, and the environment is still debated in the scientific community. The extent of their influence remains to be determined and particularly requires a better understanding of the variability of their distribution. In this work, we studied the variability of these aerosols in western Africa using different types of satellite observations. SeaWiFS (Sea-Viewing Wide Field-of-View Sensor) and OMI (Ozone Monitoring Instrument) data have been used to characterize the spatial distribution of mineral aerosols from their optical and physical properties over the period 2005–2010. In particular, we focused on the variability of the transition between continental western African and the eastern Atlantic Ocean. Data provided by the lidar scrolling CALIOP (Cloud-Aerosol Lidar with Orthogonal Polarization) onboard the satellite CALIPSO (Cloud Aerosol Lidar and Infrared Pathfinder Satellite Observations) for the period 2007–2013 were then used to assess the seasonal variability of the vertical distribution of desert aerosols. We first obtained a good representation of aerosol optical depth (AOD) and single-scattering albedo (SSA) from the satellites SeaWiFS and OMI, respectively, in comparison with AERONET estimates, both above the continent and the ocean. Dust occurrence frequency is higher in spring and boreal summer. In spring, the highest occurrences are located between the surface and 3 km above sea level, while in summer the highest occurrences are between 2 and 5 km altitude. The vertical distribution given by CALIOP also highlights an abrupt change at the coast from spring to fall with a layer of desert aerosols confined in an atmospheric layer uplifted from the surface of the ocean. This uplift of the aerosol layer above the ocean contrasts with the winter season during which mineral aerosols are confined in the atmospheric boundary layer. Radiosondes at Dakar Weather Station (17.5° W, 14.74° N) provide basic thermodynamic variables which partially give a causal relationship between the layering of the atmospheric circulation over western Africa and their aerosol contents throughout the year. A SSA increase is observed in winter and spring at the transition between the continent and the ocean. The analysis of mean NCEP (National Centers for Environmental Prediction) winds at 925 hPa between 2000 and 2012 suggest a significant contribution of coastal sand sources from Mauritania in winter which would increase SSA over the ocean

Attributes of mesoscale convective systems at the land-ocean transition in Senegal during NASA African Monsoon Multidisciplinary Analyses

In this study we investigate the development of a mesoscale convective system (MCS) as it moved from West Africa to the Atlantic Ocean on 31 August 2006. We document surface and atmospheric conditions preceding and following the MCS, particularly near the coast. These analyses are used to evaluate how thermodynamic and microphysical gradients influence storms as they move from continental to maritime environments. To achieve these goals, we employ observations from NASA African Monsoon Multidisciplinary Analyses (NAMMA) from the NASA S band polarimetric Doppler radar, a meteorological flux tower, upper-air soundings, and rain gauges. We show that the MCS maintained a convective leading edge and trailing stratiform region as it propagated from land to ocean. The initial strength and organization of the MCS were associated with favorable antecedent conditions in the continental lower atmosphere, including high specific humidity (18 g kg ), temperatures (300 K), and wind shear. While transitioning, the convective and stratiform regions became weaker and disorganized. Such storm changes were linked to less favorable thermodynamic, dynamic, and microphysical conditions over ocean. To address whether storms in different life-cycle phases exhibited similar features, a composite analysis of major NAMMA events was performed. This analysis revealed an even stronger shift to lower reflectivity values over ocean. These findings support the hypothesis that favorable thermodynamic conditions over the coast are a prerequisite to ensuring that MCSs do not dissipate at the continental-maritime transition, particularly due to strong gradients that can weaken West African storms moving from land to ocean

ENSO impact on northwest African upwelling

One of the most robust ENSO teleconnections is that linking SST anomalies in the equatorial Pacific and Tropical North Atlantic (TNA) in boreal spring. While the role played by the wind-evaporation-SST (WES) feedback in maintaining the ENSO-related SST anomalies over the TNA is well understood, many questions remain open about the signature of this ENSO teleconnection on the northwest African upwelling system and its role for the further response during the spring season along the whole TNA. This issue is analyzed here in both observations and CGCM models with different nominal resolution (CMIP6 HighResMIP simulations). In particular, the relevance of the mean state variability in the tropical Atlantic for modulating the northwest African upwelling response to ENSO has been assessed in depth. Furthermore, and considering the exceptional ecological importance of this upwelling area, the ENSO-related influence on the spatio-temporal variability of round sardinella (the dominant fish species in terms of abundance) has been also analyzed. To this aim, an end-to-end strategy which combines models of physics (hydrodynamic), lower trophic levels (nutrient-plankton) and upper trophic levels (sardinella), is used. All these analyses highlight from both climate and ecological perspectives, the relevance of better understanding the ENSO-northwest African upwelling teleconnection.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

In-situ fluorescence spectroscopy indicates total bacterial abundance and dissolved organic carbon

We explore in-situ fluorescence spectroscopy as an instantaneous indicator of total bacterial abundance and faecal contamination in drinking water. Eighty-four samples were collected outside of the recharge season from groundwater-derived water sources in Dakar, Senegal. Samples were analysed for tryptophan-like (TLF) and humic-like (HLF) fluorescence in-situ, total bacterial cells by flow cytometry, and potential indicators of faecal contamination such as thermotolerant coliforms (TTCs), nitrate, and in a subset of 22 samples, dissolved organic carbon (DOC). Significant single-predictor linear regression models demonstrated that total bacterial cells were the most effective predictor of TLF, followed by on-site sanitation density; TTCs were not a significant predictor. An optimum multiple-predictor model of TLF incorporated total bacterial cells, nitrate, nitrite, on-site sanitation density, and sulphate (r2 0.68). HLF was similarly related to the same parameters as TLF, with total bacterial cells being the best correlated (ρs 0.64). In the subset of 22 sources, DOC clustered with TLF, HLF, and total bacterial cells, and a linear regression model demonstrated HLF was the best predictor of DOC (r2 0.84). The intergranular nature of the aquifer, timing of the study, and/or non-uniqueness of the signal to TTCs can explain the significant associations between TLF/HLF and indicators of faecal contamination such as on-site sanitation density and nutrients but not TTCs. The bacterial population that relates to TLF/HLF is likely to be a subsurface community that develops in-situ based on the availability of organic matter originating from faecal sources. In-situ fluorescence spectroscopy instantly indicates a drinking water source is impacted by faecal contamination but it remains unclear how that relates specifically to microbial risk in this setting

Event attribution science in adaptation decision-making: the context of extreme rainfall in urban Senegal

Event attribution assesses the effect of climate change on individual extreme events. While scientists have suggested that results could be relevant for climate adaptation policy, this has had little empirical investigation, particularly in developing regions. Taking the case of Senegal, the national adaptation policy context regarding extreme precipitation and flooding in urban areas, and the scientific information needed to support this policy, is investigated using key informant interviews, a workshop and document analysis. Flooding in Senegal was found to be viewed primarily as an urban planning concern rather than a climate change issue, with actions to address the impacts focussing on current vulnerabilities of urban communities without considering changing climate risks. While stakeholders thought event attribution might be useful to inform about climate change impacts and future risks of extreme events, it is unclear whether there would be opportunity for this at present, due to the limited role climate information has in adaptation decision-making. While addressing vulnerability to extremes is necessary whether or not the risk is climate change-related, if long-term planning is to be resilient then knowledge about future changes in risks of extremes will need to be considered, even if individual events are not attributed to climate change

Chronic kidney disease and neurological disorders: are uraemic toxins the missing piece of the puzzle?

Chronic kidney disease (CKD) perturbs the crosstalk with others organs, with the interaction between the kidneys and the heart having been studied most intensively. However, a growing body of data indicates that there is an association between kidney dysfunction and disorders of the central nervous system. In epidemiological studies, CKD is associated with a high prevalence of neurological complications, such as cerebrovascular disorders, movement disorders, cognitive impairment and depression. Along with traditional cardiovascular risk factors (such as diabetes, inflammation, hypertension and dyslipidaemia), non-traditional risk factors related to kidney damage (such as uraemic toxins) may predispose patients with CKD to neurological disorders. There is increasing evidence to show that uraemic toxins, for example indoxyl sulphate, have a neurotoxic effect. A better understanding of factors responsible for the elevated prevalence of neurological disorders among patients with CKD might facilitate the development of novel treatments. Here, we review (i) the potential clinical impact of CKD on cerebrovascular and neurological complications, (ii) the mechanisms underlying the uraemic toxins' putative action (based on pre-clinical and clinical research) and (iii) the potential impact of these findings on patient care