The mitochondrial single-stranded DNA binding protein from S. cerevisiae, Rim1, does not form stable homo-tetramers and binds DNA as a dimer of dimers

Rim1 is the mitochondrial single-stranded DNA binding protein in Saccharomyces cerevisiae and functions to coordinate replication and maintenance of mtDNA. Rim1 can form homo-tetramers in solution and this species has been assumed to be solely responsible for ssDNA binding. We solved structures of tetrameric Rim1 in two crystals forms which differ in the relative orientation of the dimers within the tetramer. In testing whether the different arrangement of the dimers was due to formation of unstable tetramers, we discovered that while Rim1 forms tetramers at high protein concentration, it dissociates into a smaller oligomeric species at low protein concentrations. A single point mutation at the dimer–dimer interface generates stable dimers and provides support for a dimer–tetramer oligomerization model. The presence of Rim1 dimers in solution becomes evident in DNA binding studies using short ssDNA substrates. However, binding of the first Rim1 dimer is followed by binding of a second dimer, whose affinity depends on the length of the ssDNA. We propose a model where binding of DNA to a dimer of Rim1 induces tetramerization, modulated by the ability of the second dimer to interact with ssDNA

Measurement of heteroaggregation rate constants by simultaneous static and dynamic light scattering

The early stages of the heteroaggregation (or heterocoagulation) of latex particles were probed by time resolved simultaneous static and dynamic light scattering (SSDLS). We show that the heteroaggregation rate constant and the apparent hydrodynamic radius of the dimer can be obtained by analyzing the SSDLS data without the need to invoke the optical form factors for the doublets. A similar approach was proposed earlier for homoaggregation. The validity of the present approach was tested by investigating heteroaggregation between sulfate and amidine latex particles of different size, and similar data for smaller particles, which were previously analyzed in terms of the Rayleigh–Debye–Gans (RDG) theory. In this case, the presently obtained rate constants were found to be in excellent agreement with the results based on RDG. The present technique is particularly interesting for larger particles, where RDG cannot be applied, or to particles of more complex shapes, where the optical form factor cannot be easily evaluated

Charging and Aggregation of Latex Particles by Oppositely Charged Dendrimers

Poly(amidoamine) (PAMAM) dendrimers were shown to adsorb strongly on negatively charged latex particles, and their effect on the particle charge and aggregation behavior was investigated by light scattering and electrophoretic mobility measurements. Time-resolved simultaneous static and dynamic light scattering was used to measure absolute aggregation rate constants. With increasing dendrimer dose, the overall charge could be tuned from negative to positive values through the isoelectric point (IEP). The aggregation is fast near the IEP and slows down further away. With decreasing ionic strength, the region of fast aggregation narrows and the dependence of the aggregation rate on the dendrimer dose is more pronounced. Surface charge heterogeneities become important for higher dendrimer generations. They widen the fast aggregation region, reduce the dependence of the aggregation rate on the dendrimer dose, and lead to an acceleration of the rate in the fast aggregation regime near the IEP. The ratio of the dendrimer charge and the particle charge exceeds the stoichiometric ratio of unity substantially and further increases with increasing generation. The tentative interpretation of such superstoichiometric charge neutralization involves coadsorption of anions and the finite thickness of the adsorbed dendrimer layer

Light-scattering form factors of asymmetric particle dimers from heteroaggregation experiments

Measurements of form factors of asymmetric particle dimers composed of oppositely charged polystyrene latex particles are presented. These measurements are based on time-resolved static and dynamic light scattering on dilute aggregating aqueous suspensions. The experimental form factors are compared with independent calculations based on the superposition T-matrix method and Rayleigh-Debye-Gans (RDG) approximation. While the RDG approximation is found to be reliable only up to particle diameters of about 250 nm, the superposition T-matrix method is very accurate for all types of dimers investigated. The present results show clearly the appropriateness of the superposition T-matrix method to estimate the optical properties of colloidal particles in the micrometer range reliably