75 research outputs found

    Protein crystals in adenovirus type 5-infected cells: requirements for intranuclear crystallogenesis, structural and functional analysis

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    Intranuclear crystalline inclusions have been observed in the nucleus of epithelial cells infected with Adenovirus serotype 5 (Ad5) at late steps of the virus life cycle. Using immuno-electron microscopy and confocal microscopy of cells infected with various Ad5 recombinants modified in their penton base or fiber domains, we found that these inclusions represented crystals of penton capsomers, the heteromeric capsid protein formed of penton base and fiber subunits. The occurrence of protein crystals within the nucleus of infected cells required the integrity of the fiber knob and part of the shaft domain. In the knob domain, the region overlapping residues 489–492 in the FG loop was found to be essential for crystal formation. In the shaft, a large deletion of repeats 4 to 16 had no detrimental effect on crystal inclusions, whereas deletion of repeats 8 to 21 abolished crystal formation without altering the level of fiber protein expression. This suggested a crucial role of the five penultimate repeats in the crystallisation process. Chimeric pentons made of Ad5 penton base and fiber domains from different serotypes were analyzed with respect to crystal formation. No crystal was found when fiber consisted of shaft (S) from Ad5 and knob (K) from Ad3 (heterotypic S5-K3 fiber), but occurred with homotypic S3K3 fiber. However, less regular crystals were observed with homotypic S35-K35 fiber. TB5, a monoclonal antibody directed against the Ad5 fiber knob was found by immunofluorescence microscopy to react with high efficiency with the intranuclear protein crystals in situ. Data obtained with Ad fiber mutants indicated that the absence of crystalline inclusions correlated with a lower infectivity and/or lower yields of virus progeny, suggesting that the protein crystals might be involved in virion assembly. Thus, we propose that TB5 staining of Ad-infected 293 cells can be used as a prognostic assay for the viability and productivity of fiber-modified Ad5 vectors

    Current tidal power technologies and their suitability for applications in coastal and marine areas

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    A considerable body of research is currently being performed to quantify available tidal energy resources and to develop efficient devices with which to harness them. This work is naturally focussed on maximising power generation from the most promising sites, and a review of the literature suggests that the potential for smaller scale, local tidal power generation from shallow near-shore sites has not yet been investigated. If such generation is feasible, it could have the potential to provide sustainable electricity for nearby coastal homes and communities as part of a distributed generation strategy, and would benefit from easier installation and maintenance, lower cabling and infrastructure requirements and reduced capital costs when compared with larger scale projects. This article reviews tidal barrages and lagoons, tidal turbines, oscillating hydrofoils and tidal kites to assess their suitability for small-scale electricity generation in shallow waters. This is achieved by discussing the power density, scalability, durability, maintainability, economic potential and environmental impacts of each concept. The performance of each technology in each criterion is scored against axial-flow turbines, allowing for them to be ranked according to their overall suitability. The review suggests that tidal kites and range devices are not suitable for small-scale shallow water applications due to depth and size requirements respectively. Cross-flow turbines appear to be the most suitable technology, as they have high power densities and a maximum size that is not constrained by water depth

    Taz1p and Teb1p, two telobox proteins in Schizosaccharomyces pombe, recognize different telomere-related DNA sequences.

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    Band shift assays were used to study proteins from the fission yeast that bind double-stranded telomeric repeat sequences. We also examine general DNA binding properties of the telobox domain, which characterizes telomere-binding proteins from a range of species. We demonstrate that Taz1p has a high affinity for the fission yeast telomeric repeat, consistent with genetic results implicating this protein in telomere maintenance. A second Schizosaccharomyces pombe telobox protein, Teb1p, is shown to bind with high affinity to the vertebrate repeat and with low affinity to the fission yeast telomeric DNA. When tested on G-rich single-stranded telomeric DNA, all these proteins bind with very low affinity, much like the human telomere-binding protein TRF1. Recombinant proteins containing just the telobox domains reproduce the specificity of binding demonstrated for the corresponding full-length proteins, indicating that the telobox domain is indeed responsible for specific DNA recognition. The presence of possible Teb1p-binding sites upstream of many genes suggests a role for this protein as a general transcription factor. Finally, band shift experiments with whole cell extracts from wild-type and taz1 (-)strains suggest that in addition to Taz1p, S.pombe has another major telomere-binding activity

    The effects of pasture inputs and intensive rotational grazing on superfine wool production, quality and income

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    A farmlet experiment was conducted between July 2000 and December 2006 as part of the Cicerone Project, which sought to enhance the profitability and sustainability of grazing enterprises on the Northern Tablelands of New South Wales, Australia. A self-replacing Merino enterprise was grazed as the dominant livestock enterprise, together with ~20% of the carrying capacity as cattle, on each of three farmlet treatments: higher levels of soil fertility and pasture renovation with flexible rotational grazing over eight paddocks (farmlet A), moderate soil fertility and pasture renovation with flexible rotational grazing over eight paddocks (farmlet B) and moderate soil fertility and pasture renovation with intensive rotational grazing over 37 paddocks (farmlet C). Prior to commencement of the trial, the three 53-ha farmlets were allocated equivalent areas of land based on soil type, slope and recent fertiliser history. This paper describes the effects of the three pasture and grazing management strategies on the production, quality and value of the wool produced per head, per ha and per farmlet. Up until 2001 there were no differences in wool production between farmlets. Thereafter, significant differences between farmlets emerged in greasy fleece weight per head and price received per kg of fleece wool. For example, the clean fleece value averaged over the 2003-05 shearings for all hoggets, ewes and wethers was 1531, 1584 and 1713 cents/kg for farmlets A, B and C, respectively. There were small but significant differences, which varied between sheep class and year, between the farmlets in average fibre diameter and staple length but less so with staple strength. In general, while the differences between farmlets in staple strength varied over time, farmlets A and B tended to have wool with longer staple length and broader fibre diameter than farmlet C and this affected wool value per kg. Differences in wool income per ha between farmlets grew in later years as the farmlet treatments took effect. In spite of farmlet A having a slightly lower wool value per kg, after taking into account its greater fleece weight per head and its higher stocking rate, the total wool income per ha was higher than on either farmlets B or C. The average gross wool income per ha from 2003 to 2005 was 303,303, 215 and $180 for farmlets A, B and C, respectively. The highest amount of greasy wool produced was in 2004 when 38.2, 26.5 and 21.5 kg/ha was harvested from farmlets A, B and C, respectively. The fibre diameter profiles of 2-year-old ewes showed similar profiles for farmlets A and B but a significantly finer fibre diameter profile for farmlet C ewes due to intensive rotational grazing. However, sheep on all three farmlets produced wool with high staple strength. Multivariate analyses revealed that greasy fleece weight, staple length and staple strength were significantly positively correlated with the proportion of the farm grazed at any one time, and with soil phosphorus, legume herbage and green digestible herbage thus highlighting the significant influence of pasture and soil inputs and of grazing management on wool production and quality

    Ku-deficient yeast strains exhibit alternative states of silencing competence

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    In Saccharomyces cerevisiae, efficient silencer function requires telomere proximity, i.e. compartments of the nucleoplasm enriched in silencing factors. Accordingly, silencers located far from telomeres function inefficiently. We show here that cells lacking yKu balance between two mitotically stable states of silencing competence. In one, a partial delocalization of telomeres and silencing factors throughout the nucleoplasm correlates with enhanced silencing at a non-telomeric locus, while in the other, telomeres retain their focal pattern of distribution and there is no repression at the non-telomeric locus, as observed in wild-type cells. The two states also differ in their level of residual telomeric silencing. These findings indicate the existence of a yKu-independent pathway of telomere clustering and Sir localization. Interestingly, this pathway appears to be under epigenetic control
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