Variability of earthworm's functional traits in eastern Amazon is more species-dependent than environment-dependent

Understanding the causes of variability in functional traits is an important question in earthworm ecology. While interspecific variation in anatomical dimensions for the same trait is well accepted, the role of environmental filters, soil degradation, and environmental stress in affecting the variability of functional traits is not well understood. In this study, we sought to determine the relative importance of environmental factors and earthworm species taxonomy on the variability in functional traits within species (intraspecific variability). We focused on eight functional traits including body mass, body length, body diameter, gizzard, gizzard thickness, septum thickness, typhlosole, and gut organic matter. We sampled earthworms of 11 different species in various regions of the eastern Amazon to determine the general responses of different species' characteristics when exposed to various ecosystem and soil conditions. Our results suggest that the functional traits of earthworms are influenced in different ways by environmental conditions. One set of traits, including body mass, body length, and body diameter, was more constant and independent of environmental variability, while another set, including gizzard diameter and length, gizzard muscle thickness, septum thickness, typhlosole, and intestinal organic matter, was more sensitive. The most affected by different environmental variables was septum thickness. We also examined which environmental factors are most important for trait variability. Our study highlights the importance of considering both environmental factors and taxonomic classification when studying the variability of functional traits within earthworm species. Overall, our results suggest that taxonomic classification alone is a good guide for estimating the major functional traits of earthworms in the Brazilian Amazon, but local conditions can their variability is which is essential for informing conservation efforts and maintaining ecosystem function

Real-Time Data Driven Wildland Fire Modeling

We are developing a wildland fire model based on semi-empirical relations that estimate the rate of spread of a surface fire and post-frontal heat release, coupled with WRF, the Weather Research and Forecasting atmospheric model. A level set method identifies the fire front. Data are assimilated using both amplitude and position corrections using a morphing ensemble Kalman filter. We will use thermal images of a fire for observations that will be compared to synthetic image based on the model state.Comment: 8 pages, 4 figures. ICCS 0

Mutations of the BRAF gene in human cancer

Cancers arise owing to the accumulation of mutations in critical genes that alter normal programmes of cell proliferation, differentiation and death. As the first stage of a systematic genome-wide screen for these genes, we have prioritized for analysis signalling pathways in which at least one gene is mutated in human cancer. The RAS RAF MEK ERK MAP kinase pathway mediates cellular responses to growth signals. RAS is mutated to an oncogenic form in about 15% of human cancer. The three RAF genes code for cytoplasmic serine/threonine kinases that are regulated by binding RAS. Here we report BRAF somatic missense mutations in 66% of malignant melanomas and at lower frequency in a wide range of human cancers. All mutations are within the kinase domain, with a single substitution (V599E) accounting for 80%. Mutated BRAF proteins have elevated kinase activity and are transforming in NIH3T3 cells. Furthermore, RAS function is not required for the growth of cancer cell lines with the V599E mutation. As BRAF is a serine/threonine kinase that is commonly activated by somatic point mutation in human cancer, it may provide new therapeutic opportunities in malignant melanoma

Fine sediment reduces vertical migrations of Gammarus pulex (Crustacea: Amphipoda) in response to surface water loss

Surface and subsurface sediments in river ecosystems are recognized as refuges that may promote invertebrate survival during disturbances such as floods and streambed drying. Refuge use is spatiotemporally variable, with environmental factors including substrate composition, in particular the proportion of fine sediment (FS), affecting the ability of organisms to move through interstitial spaces. We conducted a laboratory experiment to examine the effects of FS on the movement of Gammarus pulex Linnaeus (Crustacea: Amphipoda) into subsurface sediments in response to surface water loss. We hypothesized that increasing volumes of FS would impede and ultimately prevent individuals from migrating into the sediments. To test this hypothesis, the proportion of FS (1–2 mm diameter) present within an open gravel matrix (4–16 mm diameter) was varied from 10 to 20% by volume in 2.5% increments. Under control conditions (0% FS), 93% of individuals moved into subsurface sediments as the water level was reduced. The proportion of individuals moving into the subsurface decreased to 74% at 10% FS, and at 20% FS no individuals entered the sediments, supporting our hypothesis. These results demonstrate the importance of reducing FS inputs into river ecosystems and restoring FS-clogged riverbeds, to promote refuge use during increasingly common instream disturbances

Validation of active forest fires detected by MSG-SEVIRI by means of MODIS hot spots and AWiFS images.

The detection of forest fires and the determination of their parameters have been usually carried out by polar-orbit sensors: AVHRR, (A)ATSR, BIRD and MODIS mainly. However, their time resolution prevents them from operating in real time. In contrast, the new geostationary sensors have very appropriate capacities for the observation of the Earth and monitoring of forest fires, as is being proved. GOES, MSG and MTSAT are already operative and they have led the international community to think that the global observation network in real time may become a reality. The implementation of this network is the aim of the Global Observations of Forest Cover and Land Cover Dynamics (GOFC/GOLD) FIRE Mapping and Monitoring program, focused internationally on taking decisions concerning the research of the Global Change. In this paper, the operation in real time by the MSG-SEVIRI sensor over the Iberian Peninsula is studied. On the other hand, the reliability of validation results by means of polar sensors, with better spatial resolution, is difficult to analyze due to errors caused by confused location of fires. This paper tries to find the most appropriate spatial scale to carry out comparison between Terra/Aqua-MODIS and Resourcesat1-AWiFS image

Red Dragon: Low-cost Access to the Surface of Mars using Commercial Capabilities

We will discuss the feasibility of using a minimally-modified variant of a SpaceX Dragon capsule as a low-cost, large-capacity, near-term, Mars lander for scientific and human-precursor missions. We have been evaluating such a Red Dragon platform as an option for a Discovery Program mission concept. A Red Dragon lander has the potential to be low cost primarily because it would be derived from a routinely-flying spacecraft. Dragon is being developed to ferry cargo and crew to and from the International Space Station (ISS). The cargo variant is currently undergoing test flights, which will be followed by standard ISS cargo missions and, eventually, crewed flights. The human variant, unlike other Earth-return vehicles, appears to also have most of the capabilities necessary to land on Mars. In particular, it has a set of high-thrust, throttleable, storable bi-propellant Super- Draco engines integrated directly into the capsule which are intended for launch abort and powered landings on Earth. These thrusters suggest the possibility of a parachute-free, fully-propulsive deceleration at Mars from supersonic speeds to the surface. Concepts for large, human-relevant landers (see, e.g., [1]) also often employ supersonic retro-propulsion; Red Dragon's entry, descent, and landing approach would scale to those landers. Further, SpaceX's Falcon Heavy launch vehicle, currently under development and expected to have its first flight in 2013, will be capable of sending Dragon on a trajectory to Mars. We will discuss our motivation for exploring a Red Dragon lander, the primary technical questions which determine its feasibility, and the current results of our analysis. In particular, we will examine entry, descent, and landing (EDL) in detail. We will describe the modifications to Dragon necessary for interplanetary cruise, EDL, and operations on the Martian surface

COSMIC 2005

The Catalogue Of Somatic Mutations In Cancer (COSMIC) database and web site was developed to preserve somatic mutation data and share it with the community. Over the past 25 years, approximately 350 cancer genes have been identified, of which 311 are somatically mutated. COSMIC has been expanded and now holds data previously reported in the scientific literature for 28 known cancer genes. In addition, there is data from the systematic sequencing of 518 protein kinase genes. The total gene count in COSMIC stands at 538; 25 have a mutation frequency above 5% in one or more tumour type, no mutations were found in 333 genes and 180 are rarely mutated with frequencies <5% in any tumour set. The COSMIC web site has been expanded to give more views and summaries of the data and provide faster query routes and downloads. In addition, there is a new section describing mutations found through a screen of known cancer genes in 728 cancer cell lines including the NCI-60 set of cancer cell lines

Mutations in FRMD7, a newly identified member of the FERM family, cause X-linked idiopathic congenital nystagmus.

Idiopathic congenital nystagmus is characterized by involuntary, periodic, predominantly horizontal oscillations of both eyes. We identified 22 mutations in FRMD7 in 26 families with X-linked idiopathic congenital nystagmus. Screening of 42 singleton cases of idiopathic congenital nystagmus (28 male, 14 females) yielded three mutations (7%). We found restricted expression of FRMD7 in human embryonic brain and developing neural retina, suggesting a specific role in the control of eye movement and gaze stability

Characteristics of small breast and/or ovarian cancer families with germline mutations in BRCA1 and BRCA2

For families with a small number of cases of breast and/or ovarian cancer, limited data are available to predict the likelihood of genetic predisposition due to mutations in BRCA1 or BRCA2. In 104 families with three or more affected individuals (average 3.8) seeking counselling at family cancer clinics, mutation analysis was performed in the open reading frame of BRCA1 and BRCA2 by the protein truncation test and mutation-specific assays. In 31 of the 104 families tested, mutations were detected (30%). The majority of these mutations (25) occurred in BRCA1. Mutations were detected in 15 out of 25 families (60%) with both breast and ovarian cancer and in 16 out of 79 families (20%) with exclusively cases of breast cancer. Thus, an ovarian cancer case strongly predicted finding a mutation (P < 0.001). Within the group of small breast-cancer-only families, a bilateral breast cancer case or a unilateral breast cancer case diagnosed before age 40 independently predicted finding a BRCA1 or BRCA2 mutation (P = 0.005 and P = 0.02, respectively). Therefore, even small breast/ovarian cancer families with at least one case of ovarian cancer, bilateral breast cancer, or a case of breast cancer diagnosed before age 40, should be referred for mutation screening. © 1999 Cancer Research Campaig