Computer model validation with functional output

A key question in evaluation of computer models is Does the computer model adequately represent reality? A six-step process for computer model validation is set out in Bayarri et al. [Technometrics 49 (2007) 138--154] (and briefly summarized below), based on comparison of computer model runs with field data of the process being modeled. The methodology is particularly suited to treating the major issues associated with the validation process: quantifying multiple sources of error and uncertainty in computer models; combining multiple sources of information; and being able to adapt to different, but related scenarios. Two complications that frequently arise in practice are the need to deal with highly irregular functional data and the need to acknowledge and incorporate uncertainty in the inputs. We develop methodology to deal with both complications. A key part of the approach utilizes a wavelet representation of the functional data, applies a hierarchical version of the scalar validation methodology to the wavelet coefficients, and transforms back, to ultimately compare computer model output with field output. The generality of the methodology is only limited by the capability of a combination of computational tools and the appropriateness of decompositions of the sort (wavelets) employed here. The methods and analyses we present are illustrated with a test bed dynamic stress analysis for a particular engineering system.Comment: Published in at http://dx.doi.org/10.1214/009053607000000163 the Annals of Statistics (http://www.imstat.org/aos/) by the Institute of Mathematical Statistics (http://www.imstat.org

Origin of the X-ray Emission in the Nuclei of FR Is

We investigate the X-ray origin in FRIs using the multi-waveband high resolution data of eight FR I sources, which have very low Eddington ratios. We fit their multi-waveband spectrum using a coupled accretion-jet model. We find that X-ray emission in the source with the highest L_X (~1.8*10^-4 L_Edd) is from the advection-dominated accretion flow (ADAF). Four sources with moderate L_X(~several*10^-6 L_Edd) are complicated. The X-ray emission of one FR I is from the jet, and the other three is from the sum of the jet and ADAF. The X-ray emission in the three least luminous sources (L_X<1.0*10^-6L_Edd) is dominated by the jet. These results roughly support the predictions of Yuan and Cui(2005) where they predict that when the X-ray luminosity of the system is below a critical value, the X-radiation will not be dominated by the emission from the ADAF any longer, but by the jet. We also find that the accretion rates in four sources must be higher than the Bondi rates, which implies that other fuel supply (e.g., stellar winds) inside the Bondi radius should be important.Comment: 6 pages. To published in Journal of Physics, in proceedings of "The Universe under the Microscope - Astrophysics at High Angular Resolution" (Bad Honnef, Germany, April 2008), eds. R. Schoedel, A. Eckart, S. Pfalzner, and E. Ro

ICTV Virus Taxonomy Profile: Bromoviridae

[EN] Bromoviridae is a family of plant viruses with tri-segmented, positive-sense, single-stranded RNA genomes of about 8 kb in total. Genomic RNAs are packaged in separate virions that may also contain subgenomic, defective or satellite RNAs. Virions are variable in morphology (spherical or bacilliform) and are transmitted between hosts mechanically, in/on the pollen and non-persistently by insect vectors. Members of the family are responsible for major disease epidemics in fruit, vegetable and fodder crops such as tomato, cucurbits, bananas, fruit trees and alfalfa. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family Bromoviridae, which is available at www.ictv.global/report/bromoviridae.Production of this summary, the online chapter and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA). Members of the ICTV (10th) Report Consortium are Elliot J. Lefkowitz, Andrew J. Davison, Stuart G. Siddell, Peter Simmonds, Sead Sabanadzovic, Donald B. Smith, Richard J. Orton and F. Murilo Zerbini.Bujarski, J.; Gallitelli, D.; Garcia, F.; Pallás Benet, V.; Palukaitis, P.; Reddy, M.; Wang, A.... (2019). ICTV Virus Taxonomy Profile: Bromoviridae. Journal of General Virology. 100(8):1206-1207. https://doi.org/10.1099/jgv.0.001282S120612071008Pallas, V., Aparicio, F., Herranz, M. C., Sanchez-Navarro, J. A., & Scott, S. W. (2013). The Molecular Biology of Ilarviruses. Advances in Virus Research, 139-181. doi:10.1016/b978-0-12-407698-3.00005-3Hanssen, I. M., & Lapidot, M. (2012). Major Tomato Viruses in the Mediterranean Basin. Viruses and Virus Diseases of Vegetables in the Mediterranean Basin, 31-66. doi:10.1016/b978-0-12-394314-9.00002-6Jacquemond, M. (2012). Cucumber Mosaic Virus. Viruses and Virus Diseases of Vegetables in the Mediterranean Basin, 439-504. doi:10.1016/b978-0-12-394314-9.00013-0Pallas, V., Aparicio, F., Herranz, M. C., Amari, K., Sanchez-Pina, M. A., Myrta, A., & Sanchez-Navarro, J. A. (2012). Ilarviruses of Prunus spp.: A Continued Concern for Fruit Trees. Phytopathology®, 102(12), 1108-1120. doi:10.1094/phyto-02-12-0023-rv

A metabolomics cell-based approach for anticipating and investigating drug-induced liver injury

In preclinical stages of drug development, anticipating potential adverse drug effects such as toxicity is an important issue for both saving resources and preventing public health risks. Current in vitro cytotoxicity tests are restricted by their predictive potential and their ability to provide mechanistic information. This study aimed to develop a metabolomic mass spectrometry-based approach for the detection and classification of drug-induced hepatotoxicity. To this end, the metabolite profiles of human derived hepatic cells (i.e., HepG2) exposed to different well-known hepatotoxic compounds acting through different mechanisms (i.e., oxidative stress, steatosis, phospholipidosis, and controls) were compared by multivariate data analysis, thus allowing us to decipher both common and mechanism-specific altered biochemical pathways. Briefly, oxidative stress damage markers were found in the three mechanisms, mainly showing altered levels of metabolites associated with glutathione and γ-glutamyl cycle. Phospholipidosis was characterized by a decreased lysophospholipids to phospholipids ratio, suggestive of phospholipid degradation inhibition. Whereas, steatosis led to impaired fatty acids β-oxidation and a subsequent increase in triacylglycerides synthesis. The characteristic metabolomic profiles were used to develop a predictive model aimed not only to discriminate between non-toxic and hepatotoxic drugs, but also to propose potential drug toxicity mechanism(s)

Natural Diagonal Riemannian Almost Product and Para-Hermitian Cotangent Bundles

We obtain the natural diagonal almost product and locally product structures on the total space of the cotangent bundle of a Riemannian manifold. We find the Riemannian almost product (locally product) and the (almost) para-Hermitian cotangent bundles of natural diagonal lift type. We prove the characterization theorem for the natural diagonal (almost) para-K\"ahlerian structures on the total spaces of the cotangent bundle.Comment: 10 pages, will appear in Czechoslovak Mathematical Journa

Direct Search for Dark Matter - Striking the Balance - and the Future

Weakly Interacting Massive Particles (WIMPs) are among the main candidates for the relic dark matter (DM). The idea of the direct DM detection relies on elastic spin-dependent (SD) and spin-independent (SI) interaction of WIMPs with target nuclei. In this review paper the relevant formulae for WIMP event rate calculations are collected. For estimations of the WIMP-proton and WIMP-neutron SD and SI cross sections the effective low-energy minimal supersymmetric standard model is used. The traditional one-coupling-dominance approach for evaluation of the exclusion curves is described. Further, the mixed spin-scalar coupling approach is discussed. It is demonstrated, taking the high-spin Ge-73 dark matter experiment HDMS as an example, how one can drastically improve the sensitivity of the exclusion curves within the mixed spin-scalar coupling approach, as well as due to a new procedure of background subtraction from the measured spectrum. A general discussion on the information obtained from exclusion curves is given. The necessity of clear WIMP direct detection signatures for a solution of the dark matter problem, is pointed out.Comment: LaTeX, 49 pages, 14 figures, 185 reference

QUBIC: Exploring the Primordial Universe with the Q&U Bolometric Interferometer

In this paper, we describe QUBIC, an experiment that will observe the polarized microwave sky with a novel approach, which combines the sensitivity of state-of-the-art bolometric detectors with the systematic effects control typical of interferometers. QUBIC’s unique features are the so-called “self-calibration”, a technique that allows us to clean the measured data from instrumental effects, and its spectral imaging power, i.e., the ability to separate the signal into various sub-bands within each frequency band. QUBIC will observe the sky in two main frequency bands: 150 GHz and 220 GHz. A technological demonstrator is currently under testing and will be deployed in Argentina during 2019, while the final instrument is expected to be installed during 2020.Fil: Mennella, Aniello. University of Milan; ItaliaFil: Barbaràn, Gustavo. Comisión Nacional de Energía Atómica; ArgentinaFil: Bonaparte, Juan. Comisión Nacional de Energía Atómica; ArgentinaFil: Di Donato, Andrés Leonardo. Comisión Nacional de Energía Atómica; ArgentinaFil: Etchegoyen, Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Tecnología en Detección y Astropartículas. Comisión Nacional de Energía Atómica. Instituto de Tecnología en Detección y Astropartículas. Universidad Nacional de San Martín. Instituto de Tecnología en Detección y Astropartículas; ArgentinaFil: Fasciszewski, Adrián. Comisión Nacional de Energía Atómica; ArgentinaFil: Gamboa Lerena, Martin Miguel. Universidad Nacional de La Plata. Facultad de Ciencias Astronómicas y Geofísicas; ArgentinaFil: Garcia, Beatriz Elena. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Tecnología en Detección y Astropartículas. Comisión Nacional de Energía Atómica. Instituto de Tecnología en Detección y Astropartículas. Universidad Nacional de San Martín. Instituto de Tecnología en Detección y Astropartículas; ArgentinaFil: Gómez Berisso, Mariano. Centro Atómico Bariloche. Instituto Balseiro; ArgentinaFil: González. Manuel. Centro Atómico Bariloche. Instituto Balseiro; ArgentinaFil: Luterstein, Raùl Horacio. Comisión Nacional de Energía Atómica; ArgentinaFil: Harari, Diego Dario. Centro Atómico Bariloche. Instituto Balseiro; ArgentinaFil: Kristukat, Christian. Universidad Nacional de San Martín; ArgentinaFil: Medina, Maria Clementina. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas. Instituto Argentino de Radioastronomía. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto Argentino de Radioastronomía; ArgentinaFil: Mundo, Luis Mariano. Universidad Nacional de La Plata. Facultad de Ciencias Astronómicas y Geofísicas; ArgentinaFil: Pastoriza, Hernan. Centro Atómico Bariloche. Instituto Balseiro; ArgentinaFil: Ringegni, Pablo. Universidad Nacional de La Plata. Facultad de Ciencias Astronómicas y Geofísicas; ArgentinaFil: Romero, Gustavo Esteban. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas. Instituto Argentino de Radioastronomía. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto Argentino de Radioastronomía; ArgentinaFil: Scóccola, Claudia G.. Universidad Nacional de La Plata. Facultad de Ciencias Astronómicas y Geofísicas; ArgentinaFil: Suarez, Federico. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Tecnología en Detección y Astropartículas. Comisión Nacional de Energía Atómica. Instituto de Tecnología en Detección y Astropartículas. Universidad Nacional de San Martín. Instituto de Tecnología en Detección y Astropartículas; ArgentinaFil: The Qubic Collaboration. No especifíca;7th International Conference on New frontiers in PhysicsCretaGreciaCenter of the Orthodox Academy of Cret

Disability and the Immigrant Health Paradox: Gender and Timing of Migration

Although research has documented better health and longer life expectancy among the foreign-born relative to their U.S.-born counterparts, the U.S. Mexican-origin immigrant population is diverse and the healthy immigrant effect likely varies by key structural and demographic factors such as gender, migration history, and duration in the United States. Using a life course framework, we use data from the Hispanic Established Populations for the Epidemiologic Study of the Elderly (H-EPESE 1993–2013) which includes Mexican-American individuals aged 65 and older to assess the heterogeneity in the immigrant health advantage by age of migration and gender. We find that age of migration is an important delineating factor for disability among both men and women. The healthy immigrant hypothesis is only observable among mid- and late-life migrant men for ADL disability. While among immigrant women, late-life migrants are more likely to have an IADL disability putting them at a health disadvantage. These findings illustrate that Mexican immigrants are not a homogeneous group and migrant health selectivity depends on both gender and when migrants arrived in the United States