17 research outputs found

    Molecular Identification of Diplodia Seriata De Not. Causing Dieback Effect on Grapevines and Evaluation of in Vitro Efficacy of Five Different Synthetic Fungicides Against This Disease

    Get PDF
    DergiPark: 863506trkjnatThe aim of this study was to realize the molecular identification of Diplodia seriata De Not., a member of the Botryosphaericea family, isolated from 2-10 years old vines in vineyards showing symptoms of dieback disease. The susceptibility of the pathogen against the fungicides with the fosetyl-Al+triadimenol, azoxystorbin+difecanozole, fludioxanil+cyprodinil, metrafenone, fluopyram+tebuconazole combinations were evaluated. The isolates obtained from the root and crown parts of the vine samples were identified as D. seriata according to the morphological and molecular methods. In molecular identification, the ITS (Internal Transcribed Spacer) and TUB2 (?-tubulin) gene regions of the isolates were amplified by Real-Time PCR and the nucleotide sequences were obtained in these gene regions. After using the MEGA 7 software, ITS and TUB2 sequences were aligned and a combined phylogenetic tree was made. It has been molecularly confirmed that the D. seriata isolate has a 100% similarity index with Diplodia species according to the phylogenetic analyses. The mean effective concentration (EC50) values of fungicides used with different concentrations (0, 1, 3, 10, 30, 50, 100 ?L mL-1) were determined by Probit analysis. Cyprodinil + fludioxonil showed the highest efficacy (100%) at a concentration of 1 ?L mL-1. According to EC50 values, cyprodinil + fludioxonil (0.001 ?L mL-1) was recorded as the most effective fungicide followed by fluopyram + tebuconazole (0.520 ?L mL-1) and, azoxystrobin + difenoconazole (2.958 ?L mL-1), respectively.Bu çalışmanın amacı, geriye doğru ölüm hastalığı belirtileri gösteren bağlardaki 2-10 yaşındaki asmalardan izole edilen Botryosphaericea ailesinin bir üyesi olan Diplodia seriata De Not.'nın, moleküler tanılamasını gerçekleştirmektir. Patojenin duyarlılığı, fosetil-Al+triadimenol, azoxystorbin+difecanozole, fludioxanil+cyprodinil, metrafenon, fluopyram+tebuconazole dâhil olmak üzere çeşitli fungisitlere karşı değerlendirilmiştir. Üreticiler tarafından getirilen asma örneklerinin kök ve kök boğazı kısımlarından elde edilen izolatlar, morfolojik ve moleküler yöntemlere göre D. seriata olarak tanımlanmıştır. Moleküler tanımlamada izolatların ITS (Internal Transcribed Spacer) ve TUB2 (?-tubulin) gen bölgeleri Real-Time PCR ile çoğaltılmış ve bu gen bölgelerinden nükleotid dizileri elde edilmiştir. Daha sonra MEGA 7 yazılımı kullanılarak ITS ve TUB2 dizileri hizalanmış ve kombine bir filogenetik ağaç çizilmiştir. Diplodia seriata izolatının filogenetik analizlere göre Diplodia türleri ile % 100 benzerlik indeksine sahip olduğu moleküler olarak doğrulanmıştır. Farklı konsantrasyonlarda (0, 1, 3, 10, 30, 50, 100 ?L mL-1) kullanılan fungisitlerin ortalama etkili konsantrasyon (EC50) değerleri Probit analiziyle belirlenmiştir. Cyprodinil+fludioxonil 1 ?L mL-1 konsantrasyonunda en yüksek etkinliği (%100) göstermiştir. EC50 değerlerine göre cyprodinil+fludioxonil (0.001 ?L mL-1) en etkili fungisit olarak kaydedilmiş, ardından fluopyram+tebuconazole (0.520 ?L mL-1) ve azoxystrobin+difenokonazol (2.958 ?L mL-1) izlemiştir

    Occurrence and diversity of black-foot pathogens on asymptomatic nursery-produced grapevines in Turkiye

    Full text link
    [EN] Black-foot (BF) disease of grapevines in nurseries and young vineyards is caused by soil-borne Cylindrocarpon-like asexual morphs. They can be found both in symptomatic and asymptomatic vines, being spread to new grape growing areas during vineyard establishment. In this study, 42 grapevine nurseries located in different geographical regions in Turkiye were surveyed in 2021 to determine the presence of BF pathogens on asymptomatic marketable plants. Black-foot fungi were isolated from the roots or basal ends of asymptomatic dormant vines in 39 of the nurseries (92.9%). The percentage of isolation of BF pathogens ranged from 1.4 to 51.4% (average 18.4%). Seven species: Cylindrodendrum alicantinum, Cylindrocladiella peruviana, Dactylonectria macrodidyma, D. novozelandica, D. torresensis, Ilyonectria liriodendri, and I. robusta were identified based on DNA sequencing of histone H3 gene and phylogenetic analyses, D. torresensis being the most frequent. From these species Ca. peruviana, D. novozelandica and I. robusta were detected for the first time on grapevines in Turkiye. Pathogenicity tests on 1103P rootstock cuttings revealed that all species significantly decreased root biomass and increased root disease severity index, when compared with the non-inoculated control, D. novozelandica being the most virulent. Pathogenicity of Cm. alicantinum to grapevine was confirmed for the first time, thus this species should be included as causal agent of BF of grapevines. These findings point out that BF pathogens are highly prevalent in the nurseries and could represent a serious threat for Turkish viticulture.Akgül, DS.; Yildiz, M.; Savas, NG.; Bülbül, I.; Özarslandan, M.; León Santana, M.; Armengol Fortí, J. (2022). Occurrence and diversity of black-foot pathogens on asymptomatic nursery-produced grapevines in Turkiye. European Journal of Plant Pathology. 164(1):21-32. https://doi.org/10.1007/s10658-022-02535-521321641Abreo, E., Martínez, S., Betucci, L., & Lupo, S. (2010). Morphological and molecular characterization of Campylocarpon and Cylindrocarpon spp. associated with black foot disease of grapevines in Uruguay. Australasian Plant Pathology, 39, 446–452. https://doi.org/10.1071/AP10021Agustí-Brisach, C., & Armengol, J. (2013). Black-foot disease of grapevine: An update on taxonomy, epidemiology and management strategies. Phytopathologia Mediterranea, 52, 245–261. https://doi.org/10.14601/Phytopathol_Mediterr-12662.Agustí-Brisach, C., Gramaje, D., García-Jiménez, J., & Armengol, J. (2013). Detection of black-foot disease pathogens in the grapevine nursery propagation process in Spain. European Journal of Plant Pathology, 137, 103–112. https://doi.org/10.1007/s10658-013-0221-8Agustí-Brisach, C., Cabral, A., González-Domínguez, E., Pérez-Sierra, A., León, M., Abad-Campos, P., García-Jiménez, J., Oliveira, H., & Armengol, J. (2016). Characterization of Cylindrodendrum, Dactylonectria and Ilyonectria isolates associated with loquat decline in Spain, with description of Cylindrodendrum alicantinum sp. nov. European Journal of Plant Pathology, 145(1), 103–118. https://doi.org/10.1007/s10658-015-0820-7Aiello, D., Gusella, G., Vitale, A., Guarnaccia, V., & Polizzi, G. (2020). Cylindrocladiella peruviana and Pleiocarpon algeriense causing stem and crown rot on avocado (Persea americana). European Journal of Plant Pathology, 158(2), 419–430. https://doi.org/10.1007/s10658-020-02082-xAigoun-Mouhous, W., Elena, G., Cabral, A., Leon, M., Sabaou, N., Armengol, J., Chaouia, C., & Mahamedi, & Berraf-Tebbal, A. (2019). Characterization and pathogenicity of Cylindrocarpon-like asexual morphs associated with black foot disease in Algerian grapevine nurseries, with the description of Pleiocarpon algeriense sp. nov. European Journal of Plant Pathology, 154, 887–901. https://doi.org/10.1007/s10658-019-01708-zAkgül, D. S., Savaş, N. G., Önder, S., Özben, S., & Kaymak, S. (2014). First report of Campylocarpon fasciculare causing black foot disease of grapevine in Turkey. Plant Disease, 98(9), 1277. https://doi.org/10.1094/PDIS-03-14-0284-PDNAlaniz, S., Leon, M., García-Jiménez, J., Abad, P., & Armengol, J. (2007). Characterization of Cylindrocarpon species associated with black-foot disease of grapevine in Spain. Plant Disease, 91, 1187–1193. https://doi.org/10.1094/PDIS-91-9-1187Alaniz, S., Abad-Campos, P., García-Jiménez, J., & Armengol, J. (2011). Evaluation of fungicides to control Cylindrocarpon liriodendri and Cylindrocarpon macrodidymum in vitro, and their effect during the rooting phase in the grapevine propagation process. Crop Protection, 30, 489–494. https://doi.org/10.1016/j.cropro.2010.12.020Berlanas, C., Ojeda, S., López-Manzanares, B., Andrés-Sodupe, M., Bujanda, R., Martinez-Diz, M. D. P., Diaz-Losada, E., & Gramaje, D. (2020). Occurrence and diversity of black-foot disease fungi in symptomless grapevine nursery stock in Spain. Plant Disease, 104, 94–104. https://doi.org/10.1094/PDIS-03-19-0484-RECabral, A., Groenewald, J. Z., Rego, C., Oliveira, H., & Crous, P. W. (2012). Cylindrocarpon root rot: Multi-gene analysis reveals novel species within the Ilyonectria radicicola species -complex. Mycological Progress, 11, 655–668. https://doi.org/10.1007/s11557-011-0777-7Carlucci, A., Lops, F., Mostert, L., Halleen, F., & Raimondo, M.L. (2017). Occurrence fungi causing black foot on young grapevines and nursery rootstock plants in Italy. Phytopathologia Mediterranea, 56, 10–39. https://doi.org/10.14601/Phytopathol_Mediterr-18769.Crous, P. W., Groenewald, J. Z., Risede, J. M., & Hywel-Jones, N. L. (2004). Calonectria species and their Cylindrocladium anamorphs: Species with sphaeropedunculate vesicles. Studies in Mycology, 50, 415–429.Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783–791.Fischer, M., & Kassemeyer, H. H. (2003). Fungi associated with esca disease of grapevine in Germany. Vitis, 42, 109–116. https://doi.org/10.5073/vitis.2003.42.109-116Gatica, M., Césari, C., Magnin, S., & Dupont, J. (2001). Phaeoacremonium species and Phaeomoniella chlamydospora in vines showing “hoja de malvón” and young vine decline symptoms in Argentina. Phytopathologia Mediterranea, 40, 317–324 https://www.jstor.org/stable/44981636Gomez, K. A., & Gomez, A. A. (1984). Statistical procedures for agricultural research (2nd ed.). Wiley 680 pp.Gramaje, D., & Armengol, J. (2011). Fungal trunk pathogens in the grapevine propagation process: Potential inoculum sources, detection, identification, and management strategies. Plant Disease, 95, 1040–1055. https://doi.org/10.1094/PDIS-01-11-0025Gramaje, D., Úrbez-Torres, J. R., & Sosnowski, M. R. (2018). Managing grapevine trunk diseases with respect to etiology and epidemiology: Current strategies and future prospects. Plant Disease, 102, 12–39. https://doi.org/10.1094/PDIS-04-17-0512-FEGrasso, S., & Magnano Di San Lio, G. (1975). Infezioni di Cylindrocarpon obtusisporum su piante di vite in Sicilia. Vitis, 14, 38–39.Halleen, F., Schroers, H. J., Groenewald, J. Z., & Crous, P. W. (2004). Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black-foot disease of grapevines (Vitis spp). Studies in Mycology, 50, 431–455.Halleen, F., Fourie, P. H., & Crous, P. W. (2006). A review of black foot disease of grapevine. Phytopatologia Mediterranea, 45, 55–67 https://www.jstor.org/stable/26463236Jones, E. E., Brown, D. S., Bleach, C. M., Pathrose, B., Barclay, C., Jaspers, M. V., & Ridgway, H. J. (2012). First report of Cylindrocladiella parva as a grapevine pathogen in New Zealand. Plant Disease, 96, 144. https://doi.org/10.1094/PDIS-04-11-0347Kumar, S., Stecher, G., Li, M., Knyaz, C., & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35, 1547–1549. https://doi.org/10.1093/molbev/msy096Langenhoven, S.D., Halleen F., Spies, C.F.J., Stempien, E., & Mostert, L. (2018). Detection and quantification of black foot and crown and root rot pathogens in grapevine nursery soils in the Western cape of South Africa. Phytopathologia Mediterranea, 57, 519–537. https://doi.org/10.14601/Phytopathol_Mediterr-23921.Lawrence, D. P., Nouri, M. T., & Trouillas, F. P. (2019). Taxonomy and multi-locus phylogeny of Cylindrocarpon-like species associated with diseased roots of grapevine and other fruit and nut crops in California. Fungal Systematics and Evolution, 4, 59–75. https://doi.org/10.3114/fuse.2019.04.06Maluta, D. R., & Larignon, P. (1991). Pied-noir: mieux vaut prévenir. Viticulture, 11, 71–72.Mohammadi, H., Alaniz, S., Banihashemi, Z., & Armengol, J. (2009). Characterization of Cylindrocarpon liriodendri associated with black foot disease of grapevine in Iran. Journal of Phytopathology, 157, 642–645. https://doi.org/10.1111/j.1439-0434.2009.01555.xO’Donnell, K., Cigelnik, E., & Nirenberg, H. I. (1998). Molecular systematics and phylogeography of the Gibberella fujikuroi species complex. Mycologia, 90(3), 465–493. https://doi.org/10.2307/3761407Özben, S. (2020). Asma fidanlıklarında önemli odun dokusu fungal hastalıkların tespiti ve bazı üzüm çeşitlerinin Phaeoacremonium aleophilum’a karşı reaksiyonlarının belirlenmesi. PhD Thesis (in Turkish), Ankara University, Graduate School of Natural and Applied Science, Turkey. 175 pp.Özben, S., Demirci, F., Degirmenci, K., & Uzunok, S. (2012). First report of Cylindrocarpon macrodidymum associated with black foot disease of grapevine in Turkiye. Plant Disease, 96, 762. https://doi.org/10.1094/pdis-05-11-0393-pdnÖzben, S., Demirci, F., & Uzunok, S. (2019). First report of Cylindrocladiella parva associated with black foot disease of grapevine in Turkiye. 1st International Molecular Plant Protection Congress, 96 pp. Adana, .Petit, E., Barriault, E., Baumgartner, K., Wilcox, W. F., & Rolshausen, P. E. (2011). Cylindrocarpon species associated with black-foot of grapevine in northeastern United States and southeastern Canada. American Journal of Enology and Viticulture, 62, 177–183. https://doi.org/10.5344/ajev.2011.10112Pintos, C., Redondo, V., Costas, D., Aguin, O., & Mansilla, P. (2018). Fungi associated with grapevine trunk diseases in nursery-produced Vitis vinifera plants. Phytopathologia Mediterranea, 57, 407–424. https://doi.org/10.14601/Phytopathol_Mediterr-22964.Rego, C., Nascimento, T., & Oliviera, H. (2001). Characterization of Cylindrocarpon destructans isolates from grapevines in Portugal. Phytopathologia Mediterranea, 40, 343-350. https://doi.org/10.14601/Phytopathol_Mediterr-1614.Reis, P., Cabral, A., Nascimento, T., Oliviera, H., & Rego, C. (2013). Diversity of Ilyonectria species in a young vineyard affected by black foot disease. Phytopathologia Mediterranea, 52, 335-346. https://doi.org/10.14601/Phytopathol_Mediterr-12719.Savaş, N., Akgül, D. S., & Albaz, E. A. (2015). First report of Ilyonectria liriodendri associated with black foot disease of grapevine in Turkey. Plant Disease, 99, 1855. https://doi.org/10.1094/PDIS-03-15-0246-PDNSavaş, N., Akgül, D. S., Özarslandan, M., & Yıldız, M. (2020). First report of Dactylonectria alcacerensis and Dactylonectria torresensis associated with black foot disease of grapevine in Turkey. Plant Disease, 104, 2027. https://doi.org/10.1094/PDIS-02-20-0385-PDNStamatakis, A. (2014). RAxML version 8: A tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30, 1312–1313. https://doi.org/10.1093/bioinformatics/btu033Thompson, J. D., Higgins, D. G., & Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research, 22, 4673–4680. https://doi.org/10.1007/978-1-4020-6754-9_3188Towsend, G. R., & Heuberger, J. V. (1943). Methods for estimating losses caused by diseases in fungicide experiments. Plant Disease Reporter, 24, 340–343.Whitelaw-Weckerd, M. A., Nair, N. G., Lamont, R., Alonso, M., Priest, M. J., & Huang, R. (2007). Root infection of Vitis vinifera by Cylindrocarpon liriodendri in Australia. Australasian Plant Pathology, 36, 403–406. https://doi.org/10.1071/AP07041Ye, Q., Zhang, W., Jia, J., Li, X., Zhou, Y., Han, C., Wu, X., & Yan, J. (2021) Fungal pathogens associated with black foot of grapevine in China. Phytopathologia Mediterranea, 60(2), 303-319. https://doi.org/10.36253/phyto-12353

    Fungal trunk pathogens of Sultana Seedless vineyards in Aegean region of Turkey

    Get PDF
    In recent years, grapevine trunk diseases have become a problem in Sultana Seedless vineyards of Manisa and Izmir provinces (Aegean Region, Turkey). A field survey was conducted in 2013 in these provinces (in 8 cities and 80 vineyards) to determine disease incidence, fungal species associated with grapevine trunk diseases and pathogenicity.  Symptomatic vines were grouped by two different grapevine trunk disease symptoms: (1) typical tiger-striped leaves, (2) dead arm, shoot decline or apoplexy. Over 80% of vineyards in these areas were positive for at least one characteristic trunk disease symptom. Incidence of tiger-stripe symptom ranged from 2.9-15% and incidence of apoplexy ranged from 0–4.2%. Eight fungal species in five fungal families were identified from declining grapevines based on morphological and molecular (ITS, β-tubulin and EF1-α) studies including, Botryosphaeria dothidea, Diplodia seriata, Lasiodiplodia theobromae, Neofusicoccum parvum, Diaporthe ampelina, Phaeomoniella chlamydospora, Togninia minima and Fomitiporia mediterranea. Overall, D. ampelina was the most frequently recovered fungus from symptomatic grapevine tissues followed by botryosphaeriaceous fungi, P. chlamydospora, F. mediterranea and T. minima. Pathogenicity tests confirmed all eight fungi as pathogens of grapevine in these regions with N. parvum being the most virulent among the fungi tested

    Evaluation of patients with fibrotic interstitial lung disease: Preliminary results from the Turk-UIP study

    Get PDF
    OBJECTIVE: Differential diagnosis of idiopathic pulmonary fibrosis (IPF) is important among fibrotic interstitial lung diseases (ILD). This study aimed to evaluate the rate of IPF in patients with fibrotic ILD and to determine the clinical-laboratory features of patients with and without IPF that would provide the differential diagnosis of IPF. MATERIAL AND METHODS: The study included the patients with the usual interstitial pneumonia (UIP) pattern or possible UIP pattern on thorax high-resolution computed tomography, and/or UIP pattern, probable UIP or possible UIP pattern at lung biopsy according to the 2011 ATS/ERSARS/ALAT guidelines. Demographics and clinical and radiological data of the patients were recorded. All data recorded by researchers was evaluated by radiology and the clinical decision board. RESULTS: A total of 336 patients (253 men, 83 women, age 65.8 +/- 9.0 years) were evaluated. Of the patients with sufficient data for diag-nosis (n=300), the diagnosis was IPF in 121 (40.3%), unclassified idiopathic interstitial pneumonia in 50 (16.7%), combined pulmonary fibrosis and emphysema (CPFE) in 40 (13.3%), and lung involvement of connective tissue disease (CTD) in 16 (5.3%). When 29 patients with definite IPF features were added to the patients with CPFE, the total number of IPF patients reached 150 (50%). Rate of male sex (p<0.001), smoking history (p<0.001), and the presence of clubbing (p=0.001) were significantly high in patients with IPE None of the women <50 years and none of the men <50 years of age without a smoking history were diagnosed with IPE Presence of at least 1 of the symptoms suggestive of CTD, erythrocyte sedimentation rate (ESR), and antinuclear antibody (FANA) positivity rates were significantly higher in the non-IPF group (p<0.001, p=0.029, p=0.009, respectively). CONCLUSION: The rate of IPF among patients with fibrotic ILD was 50%. In the differential diagnosis of IPF, sex, smoking habits, and the presence of clubbing are important. The presence of symptoms related to CTD, ESR elevation, and EANA positivity reduce the likelihood of IPF

    Investigation of biokinetics of 134Cs and 241Am radionuclides in three different organisms and a new evaluation by using discrete time model

    No full text
    Tez (Doktora) -- İstanbul Teknik Üniversitesi, Fen Bilimleri Enstitüsü, 1999Thesis (Ph.D.) -- İstanbul Technical University, Institute of Science and Technology, 1999Bu çalışmada, çok bilinen bir midye türü olan Mytilus galloprovincialis, bir gastrapod türü olan Patella caerulea ve makroalg türü Enteromorpha Uma biyoindikatör organizma olarak seçilmiştir. Deniz çevresinde pek çok kirleticinin izlenmesinde M. galloprovincialis biyoindikatör organizma olarak yaygın şekilde kullanılır. Gastropoda sınıfının patellidae familyasındaki P. caerulea ile yapılan radyoizotopik biyokinetik araştırmalar literatürde bulunmamaktadır. P. caerulea kayalarda yaşar. Diğer organizma ise E. linza olup Chlorophyta sınıfının ulvacea familyasındandır. Bu organizma denizlerde iki metre derinliğe kadar kayalarda yaşayabilir. Bu organizmaları seçmemizin nedeni, bunlar besin maddeleri ile bağlantı sağladığından besin zincirinde önemlidir. 134Cs ve 241Am radyoizotoptan Çernobil kazasından sonra radyoaktif kirlilikten dolayı Karadeniz'de bulunan önemli radyoizotoplardır. Bu çalışmada 134Cs ve 241Am radyoizotoptan üç farklı organizmada çift izleyici olarak biyokinetik araştırmalar için tercih edilmiştir. Böylece organizmalar ve çift izleyicilerden dolayı orjinal bir deneysel çalışma amaçlanmıştır. Bu çalışmada kullanılan 134Cs ve 241Am radyoizotoptan Amersham Radyonüklid Kimyasal Merkezi'nden temin edilmiştir. 134Cs ve 24IAm radyoizotoplarının özgül aktiviteleri sırasıyla 175 MBq.ml"1 ve 34.67 kBq.ml"1 dir. Bütün organizmalar Karadeniz Kıyısında bulunan Şile İlçesinden toplanmıştır. Numuneler 30 /. lik yeni alınmış deniz suyu içeren plastik akvaryumlara transfer edilmiş ve deneyden önce deney şartlarına alışması sağlanmıştır. Deniz suyu, deney şartlarına alıştırma sırasında ve deney sırasında havalandınlmıştır. Bütün deneyler ışık ve sıcaklık kontrollü odalarda gerçekleştirilmiştir. Biyobirikim deneyi için, 10 / kapasiteli plastik akvaryumlar 6 /. deniz suyu ile doldurulmuştur. Her bir akvaryuma konsantrasyonu ayn ayn litresinde 1000 Bq olacak şekilde 134Cs ve 241 Am radyoizotoplan ilave edilmiştir. Organizmalar akvaryuma yerleştirilmeden önce plastik bıçak kullanılarak epifaunasından (üzerinde bulunan organizmalardan) temizlenmiştir. Organizmalar haftada iki kere değiştirilen ve içerisine radyoaktif madde ilave edilen deniz suyunda denge durumuna gelinceye kadar bekletilmiştir. Deney sırasında, yumuşakçalar yaklaşık 30 dakika temiz deniz suyuna transfer edilmiş ve sağlık şartlarını sağlayabilmek için düzenli bir şekilde P. tricornutum ile beslenmiştir. X111 Midye ve patella örnekleri, biyobirikim ve kayıp deneyleri sırasında dokularına ayrılarak yumuşak doku ve kabuklarına ait radyasyon miktarları tayin edilmiştir. Farklı dokularda keza konsantrasyon ve biyolojik yan-ömür değerleri de hesaplanmıştır. 134Cs ve 241Am radyoizotoplarının sudan biyobirikimi araştırılmıştır. 134Cs ve radyoizotopunun konsantrasyon faktörü küçük midye, büyük midye, patella ve makroalg örneklerinde araştırılmış ve sırasıyla 2.80, 2.57, 2.00 ve 2.00 olarak bulunmuştur. Aynı zamanda yumuşak dokuda ise 134Cs radyoizotopunun konsantrasyon faktörü midyeler için 16.11 ve patella için ise 5.46 olarak bulunmuştur. Diğer taraftan, kabuk dokusunun konsantrasyon faktörü midye ve patella türü organizmanın bütün vücuduna nazaran önemli bir farklılık gösterir. Bu grupta en yüksek konsantrasyon faktörü M. galloprovincialis için bulunmuştur. Fakat 134Cs radyoizotopunun midyedeki biyobirikimi organizmaların büyüklüğüne bağlıdır. 241 Am radyoizotopunun konsantrasyon faktörleri farklı büyüklükteki midyelerde ve diğer organizmalarda 200, 150, 260 ve 1380 olarak bulunmuşlarda-. 241 Am radyoizotopuna ait konsantrasyon faktörünün midyelerin yumuşak dokusunda ve kabuk kısmında aynı ve 250 olduğu bulunmuştur. Bununla beraber 241 Am radyoizotopunun patellanın kabuk kısmında, aynı organizmanın yumuşak dokusuna göre 3 kere daha yüksek olduğu bulunmuştur. Biyobirikim periyodunun sonunda, organizmalar kontamine olmamış ve akan deniz suyuna transfer edilmiştir. Kontamine olmayan suyun akış hızı, saatte 1 /. olarak düzenlenmiştir. Radyoizotopların organizmalar tarafindan tutulması birkaç hafta devam etmiştir. Radyoizotop kaybı atılım deneylerinin başlangıcında, başlangıç radyoizotop aktivitesinin yüzdesi olarak ifade edilmiştir. Çok bileşenli biyoatılımın yumuşakçalarda (M galloprovincialis ve P. caerulea), her iki radyoizotop için de uygun olduğu söylenebilir. Standart matematiksel verilerin davranışı bileşenleri hesaplamak için kullanılmıştır. Küçük midye, büyük midye ve patellada I34Cs ve 241Am radyoizotoplarının biyoatılım hızlarının lineer olmadığı, iki bileşenli olduğu ve başlangıç bileşeninin ise hızlı olduğu bulunmuştur. Bu organizmalar için 134Cs radyoizotopunun yavaş bileşen için yan-ömür değerleri sırasıyla 46.8 gün, 46.5 gün ve 6.4 gündür. Diğer taraftan makroalg örneklerinde 134Cs radyoizotopunun biyoatüımının tek bileşenli olduğu ve biyolojik yan-ömür değeri ise 15.2 gün olarak bulunmuştur. Midyelerin yumuşak kısmında 134Cs radyoizotopunun biyoatüımının arttığı ve biyolojik yan-ömür değerinin 29.4 gün olduğu bulunmuştur. Farklı olarak, patellanın yumuşak kısmında 134Cs radyoizotopunun biyolojik yan-ömrünün aynı organizmanın bütün vücudu ile benzer olduğu tespit edilmiştir. Büyük midye, küçük midye ve patellada 241 Am radyoizotopunun bütün vücuttan olan atılımının çift bileşenli olduğu ve biyolojik yan-ömür değerinin ise organizmanın yavaş bileşeni için sırasıyla 72.2 gün, 75.3 gün ve 103,2 gün olarak bulunmuşlardır. Diğer taraftan macroalglerdeki biyoatılım hızı tek bileşenli olup ve biyolojik yan-ömür değeri ise 24.8 gündür. Midye ve patellanın yumuşak dokularındaki 241Am radyoizotopunun biyoatılım hızının aynı organizmanın bütün vücuduna nazaran daha hızlı olduğu tespit edilmiştir. Biyokinetik sonuçlan Karadeniz kıyısal çevresinde 134Cs radyoizotopunun izlenmesinde midye türlerinin ve 241Am radyoizotopunun izlenmesinde de patella türlerinin kullanımının yararlı olacağını göstermiştir. XIV Bu tez çalışmasında, organizmaların kayıp deneylerinin değerlendirilmesi için, yeni bir model uygulaması önerilmiştir. Bu "kesikli zaman modeli"dir. Bu model kullanılarak kayıp deneyleri hızlı ve kolay bir şekilde değerlendirilebilmektedir. Biyolojik arınma sabiti ( k ) ve biyolojik yan-ömür (tbi/2) bu şekilde hesaplanabilir. Biyokinetik deneyler için bu iki önemli parametre, ya klasik model ya da kesikli zaman modeli kullanılarak üç farklı organizmada hesaplanmıştır. Bu kesikli zaman modelini aynı zamanda farklı radyoizotoplar için de kullanabiliriz. Bunların karşılaştırılması, kesikli zaman modeli ve klasik model tarafından hesaplanan iki değer arasındaki hata değerlerinin hayli küçük ve kabul edilebilir olduğunu göstermektedir. Böylece, bu tez çalışmasında biyokinetik deneyler için orjinal olarak önerilen,"kesikli zaman modeli"nin uygulanması sonunda biyokinetik çalışmalar için uygun güvenilirlikte olduğu kanıtlanmıştır. Bundan başka, azalma faktörü kesikli zaman modeli için önemli bir faktördür. Azalma faktörü ( r ) l'e doğru gittiğinde organizmadaki kayıp işlemi yavaş olur ve biyolojik yan ömür uzun olur. Diğer taraftan biyolojik arınma sabiti (k) sıfıra gitmektedir. Kesikli zaman modeli ile hesaplanan azalma faktörü ( r ) ile kayıp işleminin kalitesi belirlenebilmektedir. Ayrıca, kayıp deneyi azalma faktörü ( r ) 1 'e doğru gittiği zaman durdurulabilir. Böylece kayıp deneyinin uygun güvenirlilikle ve hızlı bir şekilde değerlendirilebileceği bu tez çalışmasıyla mukayeseli irdelemelerle gösterilmiş olmaktadır.In this study, the common mussel Mytilus galloprovincialis, the gastropod Patella caerulea and the macroalgae Enteromorpha lima have been selected as bioindicator organisms. M galloprovincialis is most widely use as bioindicator organisms for monitoring studies in coastal and estuarine marine environment. In literature, there has been no previous study on biokinetics of radionuclides in P. caerulea which is in the Patellidae family of gastropod class. P. caerulea lives on the rocks. The other organism was E. linza that belongs to Ulvaceae family of Chlorophyta class. It can live up to a water depth of 2 meters on the rocky sea floor. We selected the algae samples because they are links in benthic food webs. 134Cs and 7Al Am radionuclides are important radionuclides which are present in the Black Sea due to radioactive pollution after the Chernobyl accident. In this study 134Cs and 24IAm radionuclides were chosen for biokinetic investigations in three different organisms as double tracers. Solutions of 241Am (TM,2=432.2 y) and 134Cs ( Tbu2=2.062 y) used in this study were purchased from Amersham Radionuclides Chemical Center. The specific activity of the 134Cs and 241 Am in the solutions were 175 MBq.ml"1 and 34.67 kBq.ml"1 of respectively. All the organisms were collected off the Şile village on the Black Sea coast. They were transferred to 30 It. plastic aquarium containing fresh sea water for three weeks for acclimation before the experiment. The sea water was airated during the acclimation and also during experiments. All experiments were performed under light and temperature controlled laboratory conditions. For bioaccumulation experiments, plastic aquariums with 10 /. capacity were filled 6 /. of sea water. Into each aquarium 134Cs and 241Am radioisotopes were added to obtain a concentration of 1000 Bq.l"1. Before organisms placed in the aquarium, they were cleaned of any epifauna by using a plastic knife. Organisms were exposed until they reached steady state in the spiked water medium which was renewed with fresh sea water twice a week. During the experiments, mussels and patella samples were transferred into a clean sea water for approximately 30 minutes and regularly fed with P. tricornutum in an attempt to ensure good health. During accumulation and bioelimination experiments mussels and patellas were dissected and radionuclide content in soft parts and shells were determined. Concentration factors and biological half-life of the radionuclides in different tissues were also determined. XVI The bioaccumulation of 134Cs and 241Am radionuclides were investigated from water pathway. The concentration factors of 134Cs were found to be 2.80, 2.57, 2.00 and 2.00 in small mussel, large mussel, patella and macroalgae samples, respectively. At the same time, concentration factors of 134Cs radionuclide in the soft tissue were found to be 16.11 for mussels and 5.46 for patella. On the other hand, the concentration factor of the shell part was significantly different from whole body of the mussel and patella. In this group, the highest concentration factor was found in M. galloprovincialis. The accumulation of 134Cs in mussels did not depend on the size of animals. The concentration factors of 241Am were found to be 200, 150, 260 and 1380 in small mussel, large mussel, patella and macroalgae samples, respectively. The concentration factors of 241Am radionuclide in soft tissue and shell parts of mussels were found to be similar and equal to 250. However, the concentration factor of 241Am radionuclide in shell part of patella was found to be three times higher than its soft part. At the end of the bioaccumulation periods, the organisms were transferred to uncontaminated running sea water. Flow rate of the uncontaminated water adjusted to 1 liter/hour. Retention of radionuclides by organisms was monitored for several weeks. Radionuclide bioelimination expressed as % of initial radionuclides (134Cs and 241Am) activity at the beginnig of the depuration experiments (Ao). Two component bioelimination was evident for mollusc (M galloprovincialis and P. caerulea) for both the radionuclides. Standart mathematical treatment of data was used to evaluate the different components. The bioelimination rates of 134Cs and 241Am radionuclides of small mussel, large mussel and patella were found to be non-linear consisting of two components with an initial fast component. The biological half-lives of slow component of 134Cs radionuclide were 46.8 days, 46.5 days and 6.4 days for these organisms. On the other hand, the bioelimination of 134Cs radionuclide in macroalgae samples was single component and the biological half-life for this organism was found to be 15.2 days. The bioelimination of 134Cs radionuclide in soft parts of mussels was faster than whole body, with the biological half-life being 29.4 days. In contrast, the biological half life of 134Cs radionuclide in soft parts of limpet was identical with that in the whole body. The whole body bioelimination of 24IAm radionuclide in large mussel, small mussel and patella, were similar to 134Cs radionuclide; it consisted of two components with biological half-lives in slow component of the organisms being 72.2 days, 75.3days and 103.2 days respectively. On the other hand, the bioelimination rate in macroalgae was of single component with biological half-life of 24.8 days. The bioelimination rate of 241Am in soft parts of mussels and patella were faster than that in whole body of these organisms. These biokinetic results showed that the I34Cs in mussel species and the 241Am in patella species are valuable tools for radionuclide monitoring in the Black Sea. In this thesis, a new model, discrete time model, is proposed for the evaluation of radionuclide bioelimination from organisms. Bioelimination experiments can be relatively more quickly and easily using this model. Biological depuration rate (k) and biological half-lives (tbi/2) can be calculated by using this model. These two important parameters for biokinetics were calculated by using both the classical model and discrete time model in three different xvii organisms, and the results were compared. Comparisons of the two models show that the difference between the values calculated by classical model and discrete time model, are small and acceptable So, the proposed discrete time model has an adequate reliability for the biokinetics evaluation. Furthermore, reduction factor calculated from this model is an important parameter. The bioelimination process in the organisms becomes slower and biologic half-lives becomes longer, when the reduction factor ( r ) goes to 1, whereas the biological depuration rate ( k ) goes to nearly zero. The calculated reduction factor ( r ) by discreate time model can, therefore, quantify the bioelimination process. Moreover, the bioelimination experiments can be stopped when the reduction factor goes to 1. So, the bioelimination experiments can be evaluated rapidly and quickly with an adequate reliability by using the discrete time model.DoktoraPh.D

    Bağda ve domateste kurşuni küf hastalığına ruhsatlı etkili maddelere ait değişik preparatların Botrytis Cinerea'etkinliği konusunda çalışmalar

    No full text
    Bu çalısmada domates ve bagda önemli zararlara yol açabilen kursuni küf hastalıgı etmeni Botrytis cinerea Pers.:Fr ele alınmıs ve bu hastalıga karsı ruhsatlı ayni etkili maddeleri içeren degisik preparatların etkililikleri arastırılmıstır. lk asamasında, 5 etkili maddeye ait, aynı etkili maddeyi, aynı oranda ve aynı formulasyon biçiminde içeren preparatlardan piyasada bulunan fungisitlerin in vitro kosullarda, dört B. cinerea izolatını engelleyicilikleri, engelleyicilik düzeyleri, ikinci asamada ise, fungisitlerin seçilmis iki izolata etkililigi saksı denemeleriyle ortaya konmustur. Bu çalısmanın sonucunda, B.cinereaʼ ya karsı ruhsatlı olan yada etkililigi bilinen 5 etkili maddeye ait degisik preparatların aynı izolata karsı etkililiklerinde farklılıklar gözlenmistir. Ayrıca, farklı izolatlara karsı aynı etkili maddeye ait degisik preparatlarında farklı etkililikte oldugu bulunmustur

    Effects of Hot Water Treatments on Growth of Botryosphaeriaceae Fungi and Bud Vitality of Grape Scion and Rootstoks in Controlled Conditions

    No full text
    Bu çalışmada, Botryosphaeriaceae familyasından dört fungus türü ( Botryosphaeria dothidea, Diplodia seriata, Lasiodiplodia theobromae ve Neofusicoccum parvum), beş asma anacı (1103P, 110R, 41B, Kober 5BB ve Ramsey) ve 10 asma çeşidinin (Alphonse Lavallée, Cabernet Sauvignon, Cardinal, Çal Karası, Hamburg Misketi, İtalya, Pembe Gemre, Sultani Çekirdeksiz, Trakya İlkeren ve Yalova İncisi) in vitro ve kontrollü koşullarda sıcak su uygulamalarına duyarlılıkları test edilmiştir. Fungusların miselyal agar disklerini içeren santrifüj tüpleri kuru blok ısıtıcıda 47, 48, 49, 50, 51 ve 52 °C’de, 30, 45 ve 60 dakika süreyle tutulmuşlardır. Fungal diskler daha sonra patates dekstroz agar besi yerine transfer edilerek 24°C’de 5 gün süreyle gelişmeye bırakılmıştır. Denemenin ikinci bölümünde 30 cm boyundaki asma çubukları, 30 ve 45 dk süreyle 51, 52 ve 53°C’lik sıcak su uygulamasına maruz bırakılmış ve ardından 15°C’lik soğuk su banyosuna alınmışlardır. Bu uygulamadan sonra anaç ve çeşitlere ait çubuklar, iklim odası koşullarındaki (24°C sıcaklık, 16 saat aydınlık ve 8 saat karanlık, %85 nispi nem) köklendirme ortamına dikilmişler ve 15 gün sonra göz canlılığına göre değerlendirilmişlerdir. Invitro’da sıcak su uygulamalarına en dayanıklı tür L. theobromae olurken, en duyarlı tür D. seriata olmuştur. D. seriata ve L. theobromae için lethal sıcaklık ve zaman kombinasyonu sırasıyla 47°C-30 dk ve 51°C-45 dk olarak bulunmuştur. Anaç ve çeşitlerden ise İtalya ve Kober-5BB bu uygulamalara en tolerant olarak gözlenirken, 53°C’de 45 dakikalık uygulamalar bu çeşitlerin göz canlılığında sırasıyla %37.3 ve %46.7’lik azalmaya yol açmıştır.Sensitivity of four Botryosphaeriaceae fungi species (Botryosphaeria dothidea, Diplodia seriata, Lasiodiplodia theobromae and Neofusicoccum parvum), five grapevine rootstocks (1103P, 110R, 41B, Kober 5BB and Ramsey) and ten grapevine cultivars (Alphonse Lavall&eacute;e, Cabernet Sauvignon, Cardinal, Cal Karasi, Hamburg Muscat, Italia, Pembe Gemre, Sultana Seedless, Trakya Ilkeren and Yalova Incisi) to hot-water treatments (HWTs) were tested in vitro and under controlled conditions. Centrifuge tubes (containing fresh mycelial agar plugs) were held on heating block for 30, 45 and 60 minutes at 47, 48, 49, 50, 51, 52 °C. Fungal discs were then transferred to potato dextrose agar to allow mycelial growth at 24°C for 5 days. In a second experiment, 30-cm-grapevine canes were HWT treated at 51, 52 and 53°C for two periods: 30 or 45 minutes, then plunged into a cool bath at 15°C for 10 minutes. Rootstocks and cultivars were planted immediately after the treatment in rooting benches for 15 days to evaluate bud vigour under greenhouse conditions (at 24°C and 85% RH for 16/8h day/night). The most sensitive fungal species to HWT in vitro was D. seriata, while the most resistant was L. theobromae. The lethal temperature and time combinations for D. seriata and L. theobromae were 47°C-30 min and 51°C- 45 min respectively. Italia and Kober 5BB were the most tolerant varieties to HWT and treatments of 53°C-45 min reduced the vigour rates to 37.3% and 46.7% for Italia and Kober 5BB, respectively
    corecore