Using Bayesian mark-recapture modelling to quantify the strength and duration of post-release effects in reintroduced populations

Translocated animals often suffer elevated mortality during some acclimation period after release. Such post-release effects must be accounted for when estimating normal survival rates and therefore predicting population persistence. The standard approach for doing this is to nominate a fixed acclimation period, and either i) exclude survival data over that period, or ii) use model selection criteria to test whether survival differs over that period. We present a more flexible approach where the acclimation period is treated as unknown and is estimated simultaneously with the pre- and post-acclimation survival probabilities. We illustrate this approach using survival data for six reintroduced populations involving three New Zealand forest bird species. Analyses of the complete data sets (22–73 surveys conducted over 4–14 years) indicated that significant post-release effects occurred in at least one sex in five of the six populations, with 30–84% mortality attributable to post-release effects over acclimation periods ranging from 1 to 9 months. When we applied the approach to just the first year of data for each population, the estimated normal survival rates were consistent with those obtained from the complete data sets, and always at least as accurate as our previous approach of excluding data up to the next breeding season after translocation. The flexible approach therefore appears to be effective for accounting for post-release effects in survival estimation, and is beneficial in quantifying both the strength and duration of those effects so that pre- and post-release management strategies are better informed

Interactions between canopy structure and herbaceous biomass along environmental gradients in moist forest and dry miombo woodland of Tanzania

We have limited understanding of how tropical canopy foliage varies along environmental gradients, and how this may in turn affect forest processes and functions. Here, we analyse the relationships between canopy leaf area index (LAI) and above ground herbaceous biomass (AGBH) along environmental gradients in a moist forest and miombo woodland in Tanzania. We recorded canopy structure and herbaceous biomass in 100 permanent vegetation plots (20 m × 40 m), stratified by elevation. We quantified tree species richness, evenness, Shannon diversity and predominant height as measures of structural variability, and disturbance (tree stumps), soil nutrients and elevation as indicators of environmental variability. Moist forest and miombo woodland differed substantially with respect to nearly all variables tested. Both structural and environmental variables were found to affect LAI and AGBH, the latter being additionally dependent on LAI in moist forest but not in miombo, where other factors are limiting. Combining structural and environmental predictors yielded the most powerful models. In moist forest, they explained 76% and 25% of deviance in LAI and AGBH, respectively. In miombo woodland, they explained 82% and 45% of deviance in LAI and AGBH. In moist forest, LAI increased non-linearly with predominant height and linearly with tree richness, and decreased with soil nitrogen except under high disturbance. Miombo woodland LAI increased linearly with stem density, soil phosphorous and nitrogen, and decreased linearly with tree species evenness. AGBH in moist forest decreased with LAI at lower elevations whilst increasing slightly at higher elevations. AGBH in miombo woodland increased linearly with soil nitrogen and soil pH. Overall, moist forest plots had denser canopies and lower AGBH compared with miombo plots. Further field studies are encouraged, to disentangle the direct influence of LAI on AGBH from complex interrelationships between stand structure, environmental gradients and disturbance in African forests and woodlands

Two Antarctic penguin genomes reveal insights into their evolutionary history and molecular changes related to the Antarctic environment

BACKGROUND: Penguins are flightless aquatic birds widely distributed in the Southern Hemisphere. The distinctive morphological and physiological features of penguins allow them to live an aquatic life, and some of them have successfully adapted to the hostile environments in Antarctica. To study the phylogenetic and population history of penguins and the molecular basis of their adaptations to Antarctica, we sequenced the genomes of the two Antarctic dwelling penguin species, the Adélie penguin [Pygoscelis adeliae] and emperor penguin [Aptenodytes forsteri]. RESULTS: Phylogenetic dating suggests that early penguins arose ~60 million years ago, coinciding with a period of global warming. Analysis of effective population sizes reveals that the two penguin species experienced population expansions from ~1 million years ago to ~100 thousand years ago, but responded differently to the climatic cooling of the last glacial period. Comparative genomic analyses with other available avian genomes identified molecular changes in genes related to epidermal structure, phototransduction, lipid metabolism, and forelimb morphology. CONCLUSIONS: Our sequencing and initial analyses of the first two penguin genomes provide insights into the timing of penguin origin, fluctuations in effective population sizes of the two penguin species over the past 10 million years, and the potential associations between these biological patterns and global climate change. The molecular changes compared with other avian genomes reflect both shared and diverse adaptations of the two penguin species to the Antarctic environment

Grass defoliation affecting survival and growth of seedlings of Acacia karroo, an encroaching species in southwestern Zimbabwe

Two experiments were conducted, one in the field and the other in the greenhouse, to investigate the effects of the intensity and frequency of grass defoliation on the survival and growth of Acacia karroo seedlings. In the greenhouse, seedlings growing with heavily clipped grasses had higher biomass production than those competing with moderately clipped grasses. Root/shoot ratios were higher in treatments with unclipped grasses. There was a negative relationship between grass root production and A. karroo biomass production. The field experiment was carried out in two paddocks, one previously heavily-grazed and the other lightly-grazed. Grazing in both paddocks was simulated by artificial defoliation. Generally more A. karroo seedlings emerged under lightly defoliated treatments. Clipping frequency had a strong effect (P = 0.066) on the survival of emerged seedlings during the wet season. There were no differences in survival rate at the end of the dry season. Though grass defoliation was shown to enhance seedling growth under controlled conditions, no evidence was found to suggest that seedling establishment during the first year is influenced by the intensity of grass defoliation.Keywords: Acacia karroo; botany; bush encroachment; grass; grass defoliation; grazing; growth; seedling establishment; seedlings; survival; Zimbabwe; biomass production; clipping; defoliation; setaria incrassata; treesAfrican Journal of Range & Forage Science, Vol. 15(1 & 2), pp. 41–4