Estimation de complexité et localisation de véhicules à l'aide de l'apprentissage profond

L'analyse de la circulation routière est un domaine du génie civil permettant d'optimiser le déplacement des véhicules sur un système routier. Une étape importante de tout système d'analyse de trafic routier est la localisation des véhicules. Cette étape est effectuée à l'aide d'algorithmes d'apprentissage automatique, les réseaux de neurones à convolution. Ce mémoire présente deux nouvelles bases de données de localisation et classification de véhicules permettant l'évaluation de techniques d'apprentissage modernes. Celles-ci contiennent plus de 648 959 véhicules classifiés parmi 11 classes. Un atout majeur de la base de données de localisation est la très grande variété de scènes permettant une meilleure évaluation des techniques dans plusieurs contextes différents. Par la suite, on présente une technique d'estimation de la complexité d'une base de données. Cette technique permet d'analyser une base de données en un temps raisonnable et en apprendre plus sur sa composition. Elle permet d'estimer les performances atteignables par un algorithme d'apprentissage automatique sur cette base de données et d'en apprendre plus sur les relations entre les classes. Finalement, une ébauche d'article sur une technique d'apprentissage automatique pour l'estimation d'orientation des véhicules est présentée en annexe. Cette méthode propose l'ajout d'un composant permettant l'«apprentissage en ligne» du modèle ce qui permet d'adapter le modèle à la scène proposée. Malgré cet ajout, ce modèle reste fiable pour la localisation et la classification tout en gardant sa rapidité d'exécution

Ihog and Boi are essential for Hedgehog signaling in Drosophila

<p>Abstract</p> <p>Background</p> <p>The Hedgehog (Hh) signaling pathway is important for the development of a variety of tissues in both vertebrates and invertebrates. For example, in developing nervous systems Hh signaling is required for the normal differentiation of neural progenitors into mature neurons. The molecular signaling mechanism underlying the function of Hh is not fully understood. In <it>Drosophila</it>, Ihog (Interference hedgehog) and Boi (Brother of Ihog) are related transmembrane proteins of the immunoglobulin superfamily (IgSF) with orthologs in vertebrates. Members of this IgSF subfamily have been shown to bind Hh and promote pathway activation but their exact role in the Hh signaling pathway has remained elusive. To better understand this role <it>in vivo</it>, we generated loss-of-function mutations of the <it>ihog </it>and <it>boi </it>genes, and investigated their effects in developing eye and wing imaginal discs.</p> <p>Results</p> <p>While mutation of either <it>ihog </it>or <it>boi </it>alone had no discernible effect on imaginal tissues, cells in the developing eye disc that were mutant for both <it>ihog </it>and <it>boi </it>failed to activate the Hh pathway, causing severe disruption of photoreceptor differentiation in the retina. In the anterior compartment of the developing wing disc, where different concentrations of the Hh morphogen elicit distinct cellular responses, cells mutant for both <it>ihog </it>and <it>boi </it>failed to activate responses at either high or low thresholds of Hh signaling. They also lost their affinity for neighboring cells and aberrantly sorted out from the anterior compartment of the wing disc into posterior territory. We found that <it>ihog </it>and <it>boi </it>are required for the accumulation of the essential Hh signaling mediator Smoothened (Smo) in Hh-responsive cells, providing evidence that Ihog and Boi act upstream of Smo in the Hh signaling pathway.</p> <p>Conclusions</p> <p>The consequences of <it>boi;ihog </it>mutations for eye development, neural differentiation and wing patterning phenocopy those of <it>smo </it>mutations and uncover an essential role for Ihog and Boi in the Hh signaling pathway.</p

Variable-number tandem-repeat markers for typing Mycobacterium intracellulare strains isolated in humans

<p>Abstract</p> <p>Background</p> <p><it>Mycobacterium intracellulare</it>, a species of the <it>Mycobacterium avium complex</it>, may be the cause of severe lung, lymphatic node, skin and bone/joint infections, as well as bacteriemia. The goal of this work was to identify Mycobacterial Interspersed Repetitive Unit-Variable Number Tandem Repeat (MIRU-VNTR) markers and to study their variability in a collection of isolates of <it>M. intracellulare </it>collected in humans. We studied 61 isolates collected in humans between 2001 and 2008, as well as the reference strain, <it>M. intracellulare </it>ATCC 13950.</p> <p>Results</p> <p>We identified 45 MIRU-VNTR candidates, of which 17 corresponded to the MIRU-VNTR identified in the genome of <it>M. intracellulare </it>ATCC 13950. Among the 45 potential MIRU-VNTR, seven were selected for use in a MIRU-VNTR assay applied to our collection of isolates. Forty-four patterns were found by MIRU-VNTR typing and the discriminatory power of the assay was high with a Hunter-Gaston diversity index of 0.98. We do not have evidence of a particular distribution of MIRU-VNTR polymorphism according to clinical situation.</p> <p>Conclusions</p> <p>Our results suggest that MIRU-VNTR typing could be used for molecular epidemiological studies applied to <it>M. intracellulare</it>.</p

14-3-3 Proteins Regulate a Cell-Intrinsic Switch from Sonic Hedgehog-Mediated Commissural Axon Attraction to Repulsion after Midline Crossing

SummaryAxons must switch responsiveness to guidance cues during development for correct pathfinding. Sonic Hedgehog (Shh) attracts spinal cord commissural axons ventrally toward the floorplate. We show that after crossing the floorplate, commissural axons switch their response to Shh from attraction to repulsion, so that they are repelled anteriorly by a posterior-high/anterior-low Shh gradient along the longitudinal axis. This switch is recapitulated in vitro with dissociated commissural neurons as they age, indicating that the switch is intrinsic and time dependent. 14-3-3 protein inhibition converted Shh-mediated repulsion of aged dissociated neurons to attraction and prevented the correct anterior turn of postcrossing commissural axons in vivo, an effect mediated through PKA. Conversely, overexpression of 14-3-3 proteins was sufficient to drive the switch from Shh-mediated attraction to repulsion both in vitro and in vivo. Therefore, we identify a 14-3-3 protein-dependent mechanism for a cell-intrinsic temporal switch in the polarity of axon turning responses

Long-range guidance of spinal commissural axons by netrin1 and sonic hedgehog from midline floor plate cells

An important model for axon pathfinding is provided by guidance of embryonic commissural axons from dorsal spinal cord to ventral midline floor plate (FP). FP cells produce a chemoattractive activity, comprised largely of netrin1 (FP-netrin1) and Sonic hedgehog (Shh), that can attract the axons at a distance in vitro. netrin1 is also produced by ventricular zone (VZ) progenitors along the axons’ route (VZ-netrin1). Recent studies using region-specific netrin1 deletion suggested that FP-netrin1 is dispensable and VZ-netrin1 sufficient for netrin guidance activity in vivo. We show that removing FP-netrin1 actually causes guidance defects in spinal cord consistent with long-range action (i.e., over hundreds of micrometers), and double mutant analysis supports that FP-netrin1 and Shh collaborate to attract at long range. We further provide evidence that netrin1 may guide via chemotaxis or haptotaxis. These results support the model that netrin1 signals at both short and long range to guide commissural axons in spinal cord.Z.W. was supported by the Kavli Neural Systems Institute at The Rockefeller University. S.M. was supported by a Keidanren Ishizaka Memorial Foundation fellowship. S.T. was supported by fellowship funds from the Agency for Science, Technology and Research, Singapore (A∗STAR). N.R. was supported by a post-doctoral fellowship from the Shelby White – Leon Levy Foundation. Work performed in the M.T.-L. laboratory was supported by The Rockefeller University and Stanford University, work performed in the A.C. laboratory was supported by a grant from the Agence Nationale de la Recherche (ANR-14-CE13-0004-01), and work performed in the F.C. laboratory was supported by the Canadian Institutes of Health Research (CIHR FDN334023), the Fonds de Recherche du Québec - Santé (FRQS), and the Canada Foundation for Innovation (CFI 33768). F.C. holds the Canada Research Chair in Developmental Neurobiology.Peer reviewe

Extracorporeal Membrane Oxygenation for Severe Acute Respiratory Distress Syndrome associated with COVID-19: An Emulated Target Trial Analysis.

RATIONALE: Whether COVID patients may benefit from extracorporeal membrane oxygenation (ECMO) compared with conventional invasive mechanical ventilation (IMV) remains unknown. OBJECTIVES: To estimate the effect of ECMO on 90-Day mortality vs IMV only Methods: Among 4,244 critically ill adult patients with COVID-19 included in a multicenter cohort study, we emulated a target trial comparing the treatment strategies of initiating ECMO vs. no ECMO within 7 days of IMV in patients with severe acute respiratory distress syndrome (PaO2/FiO2 <80 or PaCO2 ≥60 mmHg). We controlled for confounding using a multivariable Cox model based on predefined variables. MAIN RESULTS: 1,235 patients met the full eligibility criteria for the emulated trial, among whom 164 patients initiated ECMO. The ECMO strategy had a higher survival probability at Day-7 from the onset of eligibility criteria (87% vs 83%, risk difference: 4%, 95% CI 0;9%) which decreased during follow-up (survival at Day-90: 63% vs 65%, risk difference: -2%, 95% CI -10;5%). However, ECMO was associated with higher survival when performed in high-volume ECMO centers or in regions where a specific ECMO network organization was set up to handle high demand, and when initiated within the first 4 days of MV and in profoundly hypoxemic patients. CONCLUSIONS: In an emulated trial based on a nationwide COVID-19 cohort, we found differential survival over time of an ECMO compared with a no-ECMO strategy. However, ECMO was consistently associated with better outcomes when performed in high-volume centers and in regions with ECMO capacities specifically organized to handle high demand. This article is open access and distributed under the terms of the Creative Commons Attribution Non-Commercial No Derivatives License 4.0 (http://creativecommons.org/licenses/by-nc-nd/4.0/)