Patience

A short piece of creative nonfiction about my grandma teaching me how to play solitaire in the wake of Hurricane Irma

The Irish Theology: Formation of Celtic Christianity in Ireland (5th to 9th Century)

The conversion process of Ireland resulted in a culture that reflected both its pagan, Celtic roots and the new Christian ontology. From the fifth to ninth century, Ireland’s learned elite began to be converted to Christianity and created the early monastic settlements that shaped how Christianity was introduced. The interactions between the early Irish monastic founders and the pre-Christian Irish influenced the ways in which early monasteries were established and why Christianity was introduced the way it was. By establishing the Christian faith on the basis of Irish learning, the early church worked with the learned men to establish a written vernacular language and develop an education system. This paper explores the way in which those education centers produced Irish myths, hagiographies and illuminated manuscripts, preserving the pre-Christian past within the Christian era. Ultimately, the two cultures adapted to each other, through varying levels of incorporation regarding different aspects of society, creating a culture which was both Christian and native to Ireland

Exercise for lower limb osteoarthritis : systematic review incorporating trial sequential analysis and network meta-analysis

Objective: To determine whether there is sufficient evidence to conclude that exercise interventions are more effective than no exercise control and to compare the effectiveness of different exercise interventions in relieving pain and improving function in patients with lower limb osteoarthritis. Data sources: Nine electronic databases searched from inception to March 2012. Study selection: Randomised controlled trials comparing exercise interventions with each other or with no exercise control for adults with knee or hip osteoarthritis. Data extraction: Two reviewers evaluated eligibility and methodological quality. Main outcomes extracted were pain intensity and limitation of function. Trial sequential analysis was used to investigate reliability and conclusiveness of available evidence for exercise interventions. Bayesian network meta-analysis was used to combine both direct (within trial) and indirect (between trial) evidence on treatment effectiveness. Results: 60 trials (44 knee, two hip, 14 mixed) covering 12 exercise interventions and with 8218 patients met inclusion criteria. Sequential analysis showed that as of 2002 sufficient evidence had been accrued to show significant benefit of exercise interventions over no exercise control. For pain relief, strengthening, flexibility plus strengthening, flexibility plus strengthening plus aerobic, aquatic strengthening, and aquatic strengthening plus flexibility, exercises were significantly more effective than no exercise control. A combined intervention of strengthening, flexibility, and aerobic exercise was also significantly more effective than no exercise control for improving limitation in function (standardised mean difference −0.63, 95% credible interval −1.16 to −0.10). Conclusions: As of 2002 sufficient evidence had accumulated to show significant benefit of exercise over no exercise in patients with osteoarthritis, and further trials are unlikely to overturn this result. An approach combining exercises to increase strength, flexibility, and aerobic capacity is likely to be most effective in the management of lower limb osteoarthritis. The evidence is largely from trials in patients with knee osteoarthritis

Can we use digital life-log images to investigate active and sedentary travel behaviour? Results from a pilot study

<p>Abstract</p> <p>Background</p> <p>Active travel such as walking and cycling has potential to increase physical activity levels in sedentary individuals. Motorised car travel is a sedentary behaviour that contributes to carbon emissions. There have been recent calls for technology that will improve our ability to measure these travel behaviours, and in particular evaluate modes and volumes of active versus sedentary travel. The purpose of this pilot study is to investigate the potential efficacy of a new electronic measurement device, a wearable digital camera called SenseCam, in travel research.</p> <p>Methods</p> <p>Participants (n = 20) were required to wear the SenseCam device for one full day of travel. The device automatically records approximately 3,600 time-stamped, first-person point-of-view images per day, without any action required by the wearer. Participants also completed a self-report travel diary over the same period for comparison, and were interviewed afterwards to assess user burden and experience.</p> <p>Results</p> <p>There were a total of 105 confirmed journeys in this pilot. The new SenseCam device recorded more journeys than the travel diary (99 vs. 94). Although the two measures demonstrated an acceptable correlation for journey duration (r = 0.92, p < 0.001) self-reported journey duration was over-reported (mean difference 154 s per journey; 95% CI = 89 to 218 s; 95% limits of agreement = 154 ± 598 s (-444 to 752 s)). The device also provided visual data that was used for directed interviews about sources of error.</p> <p>Conclusions</p> <p>Direct observation of travel behaviour from time-stamped images shows considerable potential in the field of travel research. Journey duration derived from direct observation of travel behaviour from time-stamped images appears to suggest over-reporting of self-reported journey duration.</p

Multidimensional Poverty Measurement and Analysis: Chapter 2 - The Framework

This working paper introduces the notation and basic concepts that are used throughout the OPHI Working Papers 82-91. The Paper has five sections. First we review unidimensional poverty measurement with particular attention to the well-known Foster-Greer-Thorbecke measures of income poverty as many methods presented in OPHI Working Paper 84 (Chapter 3 – Overview of Methods for Multidimensional Poverty Assessment) as well as the measure presented in OPHI Working Papers 86-90 (Chapters 5-9) are based on these measures. The second section introduces the notation and basic concepts for multidimensional poverty measurement that are used in subsequent chapters. Third we define indicators’ scales of measurement, and fourth, addressissues of comparability across people and dimensions. The fifth section systematically explains different properties that have been proposed in axiomatic approaches to multidimensional poverty measurement, which enable the analyst to understand the ethical principles embodied in a measure and to be aware of the direction of change they will exhibit under certain transformations

Effects of Ignoring Survey Design Information for Data Reuse

Data are currently being used, and reused, in ecological research at an unprecedented rate. To ensure appropriate reuse however, we need to ask the question: "Are aggregated databases currently providing the right information to enable effective and unbiased reuse?" We investigate this question, with a focus on designs that purposefully favor the selection of sampling locations (upweighting the probability of selection of some locations). These designs are common and examples are those designs that have uneven inclusion probabilities or are stratified. We perform a simulation experiment by creating data sets with progressively more uneven inclusion probabilities and examine the resulting estimates of the average number of individuals per unit area (density). The effect of ignoring the survey design can be profound, with biases of up to 250% in density estimates when naive analytical methods are used. This density estimation bias is not reduced by adding more data. Fortunately, the estimation bias can be mitigated by using an appropriate estimator or an appropriate model that incorporates the design information. These are only available however, when essential information about the survey design is available: the sample location selection process (e.g., inclusion probabilities), and/or covariates used in their specification. The results suggest that such information must be stored and served with the data to support meaningful inference and data reuse.Peer reviewe

Development of a regional glycerol dialkyl glycerol tetraether (GDGT)-temperature calibration for Antarctic and sub-Antarctic lakes

A regional network of quantitative reconstructions of past climate variability is required to test climate models. In recent studies, temperature calibration models based on the relative abundances of sedimentary glycerol dialkyl glycerol tetraethers (GDGTs) have enabled past temperature reconstructions in both marine and terrestrial environments. Nevertheless, to date these methods have not been widely applied in high latitude environments due to poor performance of the GDGT–temperature calibrations at lower temperatures. To address this we studied 32 lakes from Antarctica, the sub-Antarctic Islands and Southern Chile to: 1) quantify their GDGT composition and investigate the environmental controls on GDGT composition; and 2) develop a GDGT–temperature calibration model for inferring past temperatures from Antarctic and sub-Antarctic lakes. GDGTs were found in all 32 lakes studied and in 31 lakes branched GDGTs (brGDGTs) were the dominant compounds. Statistical analyses of brGDGT composition in relation to temperature, pH, conductivity and water depth showed that the composition of brGDGTs is strongly correlated with mean summer air temperature (MSAT). This enabled the development of the first regional brGDGT–temperature calibration for use in Antarctic and sub-Antarctic lakes using four brGDGT compounds (GDGT-Ib, GDGT-II, GDGT-III and GDGT-IIIb). A key discovery was that GDGT-IIIb is of particular importance in cold lacustrine environments. The addition of this compound significantly improved the model's performance from r2=0.67r2=0.67, RMSEP-LOO (leave-one-out) = 2.23 °C, RMSEP-H (h-block) = 2.37 °C when applying the re-calibrated global GDGT–temperature calibration to our Antarctic dataset to r2=0.83r2=0.83, RMSEP-LOO = 1.68 °C, RMSEP-H = 1.65 °C for our new Antarctic calibration. This shows that Antarctic and sub-Antarctic, and possibly other high latitude, palaeotemperature reconstructions should be based on a regional GDGT–temperature calibration where specific compounds can be identified and included to improve model performance. Finally, downcore temperature reconstructions using the new Antarctic brGDGT–temperature calibration were tested in sub-Antarctic Fan Lake from South Georgia providing a proof of concept for the new calibration model in the Southern Hemisphere

The immune evasion protein Sbi of Staphylococcus aureus occurs both extracellularly and anchored to the cell envelope by binding lipoteichoic acid

The Sbi protein of Staphylococcus aureus comprises two IgG-binding domains similar to those of protein A and a region that triggers the activation of complement C3. Sbi is expressed on the cell surface but its C-terminal domain lacks motifs associated with wall or membrane anchoring of proteins in Gram-positive bacteria. Cell-associated Sbi fractionates with the cytoplasmic membrane and is not solubilized during protoplast formation. S. aureus expressing Sbi truncates of the C-terminal Y domain allowed identification of residues that are required for association of Sbi with the membrane. Recombinant Sbi bound to purified cytoplasmic membrane material in vitro and to purified lipoteichoic acid. This explains how Sbi partitions with the membrane in fractionation experiments yet is partially exposed on the cell surface. An LTA-defective mutant of S. aureus had reduced levels of Sbi in the cytoplasmic membrane