Pyramidal Stochastic Graphlet Embedding for Document Pattern Classification

This is the author accepted manuscript. The final version is available from IEEE via the DOI in this recordDocument pattern classification methods using graphs have received a lot of attention because of its robust representation paradigm and rich theoretical background. However, the way of preserving and the process for delineating documents with graphs introduce noise in the rendition of underlying data, which creates instability in the graph representation. To deal with such unreliability in representation, in this paper, we propose Pyramidal Stochastic Graphlet Embedding (PSGE). Given a graph representing a document pattern, our method first computes a graph pyramid by successively reducing the base graph. Once the graph pyramid is computed, we apply Stochastic Graphlet Embedding (SGE) for each level of the pyramid and combine their embedded representation to obtain a global delineation of the original graph. The consideration of pyramid of graphs rather than just a base graph extends the representational power of the graph embedding, which reduces the instability caused due to noise and distortion. When plugged with support vector machine, our proposed PSGE has outperformed the state-of-The-art results in recognition of handwritten words as well as graphical symbols.European Union Horizon 2020Ministerio de Educación, Cultura y Deporte, SpainRamon y Cajal FellowshipCERCA Program/Generalitat de Cataluny

Graph-Based Deep Learning for Graphics Classification

This is the author accepted manuscript. The final version is available from IEEE via the DOI in this recordGraph-based representations are a common way to deal with graphics recognition problems. However, previous works were mainly focused on developing learning-free techniques. The success of deep learning frameworks have proved that learning is a powerful tool to solve many problems, however it is not straightforward to extend these methodologies to non euclidean data such as graphs. On the other hand, graphs are a good representational structure for graphical entities. In this work, we present some deep learning techniques that have been proposed in the literature for graph-based representations and we show how they can be used in graphics recognition problems.European Union Horizon 2020FPUMinisterio de Educación, Cultura y Deporte, SpainRamon y Cajal FellowshipCERCA Program/Generalitat de Cataluny

Biochar versus hydrochar as growth media constituents for ornamental plant cultivation

[EN] Biochar and hydrochar have been proposed as novel materials for providing soilless growth media. However, much more knowledge is required before reliable advice can be given on the use of these materials for this purpose. Depending on the material and the technology applied (pyrolysis or hydrothermal carbonization), phytotoxicity and greenhouse gas emissions have been found for certain chars. In this study, our aim was to assess the feasibility of three chars as substrate constituents. We compared two biochars, one from forest waste and the other from olive mill waste, and a hydrochar from forest waste. We studied how chars affected substrate characteristics, plant performance, water economy and respiratory CO2 emission. Substrates containing biochar from forest waste showed the best characteristics, with good air/water relationships and adequate electrical conductivity. Those with biochar from olive mill waste were highly saline and, consequently, low quality. The substrates with hydrochar retained too much water and were poorly aerated, presenting high CO2 concentrations due to high respiratory activity. Plants performed well only when grown in substrates containing a maximum of 25 % biochar from forest waste or hydrochar. After analyzing the char characteristics, we concluded that biochar from forest waste could be safely used as a substrate constituent and is environmentally friendly when applied due to its low salinity and low CO2 emission. However, biochar from olive mill waste and hydrochar need to be improved before they can be used as substrate constituents.This study was funded by the Polytechnic University of Valencia (Projects on New Multidisciplinary Research; PAID-05-12). We thank Molly Marcus-McBride for supervising the English.Fornes Sebastiá, F.; Belda Navarro, RM. (2018). Biochar versus hydrochar as growth media constituents for ornamental plant cultivation. Scientia Agricola (Online). 75(4):304-312. https://doi.org/10.1590/1678-992X-2017-0062S304312754Abad, M., Noguera, P., & Burés, S. (2001). National inventory of organic wastes for use as growing media for ornamental potted plant production: case study in Spain. Bioresource Technology, 77(2), 197-200. doi:10.1016/s0960-8524(00)00152-8Bargmann, I., Martens, R., Rillig, M. C., Kruse, A., & Kücke, M. (2013). Hydrochar amendment promotes microbial immobilization of mineral nitrogen. Journal of Plant Nutrition and Soil Science, 177(1), 59-67. doi:10.1002/jpln.201300154Bargmann, I., Rillig, M. C., Buss, W., Kruse, A., & Kuecke, M. (2013). Hydrochar and Biochar Effects on Germination of Spring Barley. Journal of Agronomy and Crop Science, 199(5), 360-373. doi:10.1111/jac.12024Bedussi, F., Zaccheo, P., & Crippa, L. (2015). Pattern of pore water nutrients in planted and non-planted soilless substrates as affected by the addition of biochars from wood gasification. Biology and Fertility of Soils, 51(5), 625-635. doi:10.1007/s00374-015-1011-6Belda, R. M., Lidón, A., & Fornes, F. (2016). Biochars and hydrochars as substrate constituents for soilless growth of myrtle and mastic. Industrial Crops and Products, 94, 132-142. doi:10.1016/j.indcrop.2016.08.024Costello, R. C., & Sullivan, D. M. (2013). Determining the pH Buffering Capacity of Compost Via Titration with Dilute Sulfuric Acid. Waste and Biomass Valorization, 5(3), 505-513. doi:10.1007/s12649-013-9279-yFernandes, C., & Corá, J. E. (2004). Bulk density and relationship air/water of horticultural substrate. Scientia Agricola, 61(4), 446-450. doi:10.1590/s0103-90162004000400015Fornes, F., Belda, R. M., Carrión, C., Noguera, V., García-Agustín, P., & Abad, M. (2007). Pre-conditioning ornamental plants to drought by means of saline water irrigation as related to salinity tolerance. Scientia Horticulturae, 113(1), 52-59. doi:10.1016/j.scienta.2007.01.008Fornes, F., Belda, R. M., & Lidón, A. (2015). Analysis of two biochars and one hydrochar from different feedstock: focus set on environmental, nutritional and horticultural considerations. Journal of Cleaner Production, 86, 40-48. doi:10.1016/j.jclepro.2014.08.057Fornes, F., & Belda, R. M. (2017). Acidification with nitric acid improves chemical characteristics and reduces phytotoxicity of alkaline chars. Journal of Environmental Management, 191, 237-243. doi:10.1016/j.jenvman.2017.01.026Fornes, F., Belda, R. M., Fernández de Córdova, P., & Cebolla-Cornejo, J. (2017). Assessment of biochar and hydrochar as minor to major constituents of growing media for containerized tomato production. Journal of the Science of Food and Agriculture, 97(11), 3675-3684. doi:10.1002/jsfa.8227Fornes, F., Carrión, C., García-de-la-Fuente, R., Puchades, R., & Abad, M. (2010). Leaching composted lignocellulosic wastes to prepare container media: Feasibility and environmental concerns. Journal of Environmental Management, 91(8), 1747-1755. doi:10.1016/j.jenvman.2010.03.017GARCIADELAFUENTE, R., CARRION, C., BOTELLA, S., FORNES, F., NOGUERA, V., & ABAD, M. (2007). Biological oxidation of elemental sulphur added to three composts from different feedstocks to reduce their pH for horticultural purposes. Bioresource Technology, 98(18), 3561-3569. doi:10.1016/j.biortech.2006.11.008Genty, B., Briantais, J.-M., & Baker, N. R. (1989). The relationship between the quantum yield of photosynthetic electron transport and quenching of chlorophyll fluorescence. Biochimica et Biophysica Acta (BBA) - General Subjects, 990(1), 87-92. doi:10.1016/s0304-4165(89)80016-9Hoitink, H. A. J., Stone, A. G., & Han, D. Y. (1997). Suppression of Plant Diseases by Composts. HortScience, 32(2), 184-187. doi:10.21273/hortsci.32.2.184Libra, J. A., Ro, K. S., Kammann, C., Funke, A., Berge, N. D., Neubauer, Y., … Emmerich, K.-H. (2011). Hydrothermal carbonization of biomass residuals: a comparative review of the chemistry, processes and applications of wet and dry pyrolysis. Biofuels, 2(1), 71-106. doi:10.4155/bfs.10.81Mazuela, P., Salas, M. del C., & Urrestarazu, M. (2005). Vegetable Waste Compost as Substrate for Melon. Communications in Soil Science and Plant Analysis, 36(11-12), 1557-1572. doi:10.1081/css-200059054Méndez, A., Paz-Ferreiro, J., Gil, E., & Gascó, G. (2015). The effect of paper sludge and biochar addition on brown peat and coir based growing media properties. Scientia Horticulturae, 193, 225-230. doi:10.1016/j.scienta.2015.07.032Nieto, A., Gascó, G., Paz-Ferreiro, J., Fernández, J. M., Plaza, C., & Méndez, A. (2016). The effect of pruning waste and biochar addition on brown peat based growing media properties. Scientia Horticulturae, 199, 142-148. doi:10.1016/j.scienta.2015.12.012Sáez, J. A., Belda, R. M., Bernal, M. P., & Fornes, F. (2016). Biochar improves agro-environmental aspects of pig slurry compost as a substrate for crops with energy and remediation uses. Industrial Crops and Products, 94, 97-106. doi:10.1016/j.indcrop.2016.08.035Smith, B. R., Fisher, P. R., & Argo, W. R. (2004). Growth and Pigment Content of Container-grown Impatiens and Petunia in Relation to Root Substrate pH and Applied Micronutrient Concentration. HortScience, 39(6), 1421-1425. doi:10.21273/hortsci.39.6.1421Solaiman, Z. M., Murphy, D. V., & Abbott, L. K. (2011). Biochars influence seed germination and early growth of seedlings. Plant and Soil, 353(1-2), 273-287. doi:10.1007/s11104-011-1031-4Steiner, C., & Harttung, T. (2014). Biochar as a growing media additive and peat substitute. Solid Earth, 5(2), 995-999. doi:10.5194/se-5-995-2014Tian, Y., Sun, X., Li, S., Wang, H., Wang, L., Cao, J., & Zhang, L. (2012). Biochar made from green waste as peat substitute in growth media for Calathea rotundifola cv. Fasciata. Scientia Horticulturae, 143, 15-18. doi:10.1016/j.scienta.2012.05.018Vaughn, S. F., Eller, F. J., Evangelista, R. L., Moser, B. R., Lee, E., Wagner, R. E., & Peterson, S. C. (2015). Evaluation of biochar-anaerobic potato digestate mixtures as renewable components of horticultural potting media. Industrial Crops and Products, 65, 467-471. doi:10.1016/j.indcrop.2014.10.04

The effect of progressive muscle relaxation on daily cortisol secretion

Abbreviated progressive muscle relaxation (APMR) is a much used stress-management technique. Its efficacy relevant to placebo control is already established in the literature and the primary aim of the present study was to ascertain whether its proven impact on psychological stress measures is matched by a decrease in prevailing levels of the stress-associated hormone cortisol, using accurate and robust measurement based on multiple sampling of full diurnal cortisol secretion profiles. First-year university students can face significant stress in adjustment to academic demands and immersion in a novel social network and provided a convenient study population. One hundred and one first-year students completed APMR with prevailing stress levels assessed a week before and after intervention. Both cortisol and self-report measures were significantly reduced post-intervention by 8% and 10%, respectively. The efficacy of the intervention was independent of, and not modulated by neuroticism, gender, age and smoking status. We also demonstrated that cortisol reduction was unlikely to have been a consequence of adaptation to any initial cortisol elevation prompted by the challenge of the demanding saliva collection protocol. We conclude that the efficacy of APMR in this population extends to reduction in biologically expressed stress levels as well as levels based solely on self-report

Improving Information Retrieval in Multiwriter Scenario by Exploiting the Similarity Graph of Document Terms

This is the author accepted manuscript. The final version is available from IEEE via the DOI in this recordInformation Retrieval (IR) is the activity of obtaining information resources relevant to a questioned information. It usually retrieves a set of objects ranked according to the relevancy to the needed fact. In document analysis, information retrieval receives a lot of attention in terms of symbol and word spotting. However, through decades the community mostly focused either on printed or on single writer scenario, where the state-of-The-art results have achieved reasonable performance on the available datasets. Nevertheless, the existing algorithms do not perform accordingly on multiwriter scenario. A graph representing relations between a set of objects is a structure where each node delineates an individual element and the similarity between them is represented as a weight on the connecting edge. In this paper, we explore different analytics of graphs constructed from words or graphical symbols, such as diffusion, shortest path, etc. to improve the performance of information retrieval methods in multiwriter scenario.European Union Horizon 2020Ministerio de Educación, Cultura y Deporte, SpainFPUCERCA Programme/Generalitat de Cataluny

Investigation of cross-cylinder responses under conditions of real and simulated distance

Investigation of cross-cylinder responses under conditions of real and simulated distanc

Guías para la práctica de la autopsia en casos de muerte súbita cardíaca

A pesar de que la muerte súbita cardíaca es una de las formas más importantes de muerte en los países occidentales, este problema no ha recibido la atención que merece por parte de los patólogos y de los médicos de los sistemas públicos de salud. Se han desarrollado nuevos métodos de prevención de arritmias potencialmente mortales, y el diagnóstico de certeza de las causas de muerte súbita cardíaca es en este momento de particular importancia. Los patólogos son responsables de determinar la causa exacta de la muerte súbita pero existen diferencias considerables en el modo en el que se aborda esta cada vez más compleja tarea. La Asociación Europea de Patología Cardiovascular desarrolló unas guías que representan el estándar mínimo necesario en la práctica habitual de la autopsia para la valoración de la muerte súbita cardíaca, incluyendo no sólo un protocolo para el examen del corazón y el muestreo histopatológico, sino también para la investigación toxicológica y molecular. Nuestras recomendaciones son aplicables a centros médicos universitarios, a hospitales regionales y locales y a todo tipo de Institutos de Medicina Forense. La adopción a lo largo de la Unión Europea de un método uniforme de investigación supondrá la mejora de la práctica habitual, permitirá realizar comparaciones significativas entre distintas comunidades y regiones y, lo que es más importante aún, favorecerá que se monitoricen los patrones de las enfermedades que causan una muerte súbita. Although sudden cardiac death is one of the most important mode of death in Western Countries, pathologists and public health physicians have not given this problem the attention it deserves. New methods of preventing potentially fatal arrhythmias have been developed, and the accurate diagnosis of the causes of sudden cardiac death is now of particular importance. Pathologists are responsible for determining the precise cause of sudden death but there is considerable variation in the way in which they approach this increasingly complex task. The Association for European Cardiovascular Pathology developed guidelines, which represent the minimum standard that is required in the routine autopsy practice for the adequate assessment of sudden cardiac death, including not only a protocol for heart examination and histological sampling, but also for toxicology and molecular investigation. Our recommendations apply to university medical centres, regional and district hospitals and all types of forensic medicine institutes. If a uniform method of investigation is adopted throughout the European Union, this will lead to improvements in standards of practice, allow meaningful comparisons between different communities and regions and, most importantly, permit future trends in the patterns of disease causing sudden death to be monitored

Increases in norepinephrine release and ovarian cyst formation during ageing in the rat

<p>Abstract</p> <p>Background</p> <p>Depletion of ovarian follicles is associated with the end of reproductive function in ageing females. Recently, it has been described that this process parallels increases in the concentration of norepinephrine (NE) in the rat ovary. In sexually mature rats, experimentally-induced increases in the sympathetic tone of the ovary is causally related to ovarian cyst formation and deranged follicular development. Thus, there is a possibility that increased ovarian NE concentrations represent changes in the activity of sympathetic nerves, which consequently participate in the process of ovarian cyst formation observed during ageing in the human and experimental animal models.</p> <p>Methods</p> <p>Sprague-Dawley rats between 6 and 14 months old were used to analyse the capacity of the ovary to release ³H-NE recently incorporated under transmural depolarisation in relation to changes in the ovarian follicular population. Morphometric analysis of ovarian follicles and real time PCR for Bcl2 and Bax mRNA were used to assess follicular atresia.</p> <p>Results</p> <p>From 8 months old, the induced release of recently incorporated ³H-norepinephrine (³H-NE) from the ovary and ovarian NE concentrations increased, reaching their peak values at 12 months old and remained elevated up to 14 months old. Increases in sympathetic nerve activity paralleled changes in the follicular population, as well as disappearance of the corpus luteum. In contrast, luteinised follicles, precystic follicles, and cystic follicles increased. During this period, the relationship between Bax and Bcl2 mRNAs (the proapoptotic/antiapoptotic signals) increased, suggesting atresia as the principal mechanism contributing to the decreased follicular population. When NE tone was increased, the mRNA ratio favoured Bcl2 to Bax and antiapoptotic signals dominated this period of development. Thus, these changing ratios could be responsible for the increase in luteinised follicles, as well as precystic and cystic follicles.</p> <p>Conclusion</p> <p>These data suggest that the ageing process in the ovary of the Sprague-Dawley rat is accompanied by an increased sympathetic tone of the ovary. Consequently, this sympathetic change could be related to a neuroendocrine-driven formation of a polycystic condition similar to that observed in the sympathetic-activated adult ovary.</p

A GO catalogue of human DNA-binding transcription factors

To control gene transcription, DNA-binding transcription factors recognise specific sequence motifs in gene regulatory regions. A complete and reliable GO annotation of all DNA-binding transcription factors is key to investigating the delicate balance of gene regulation in response to environmental and developmental stimuli. The need for such information is demonstrated by the many lists of transcription factors that have been produced over the past decade. The COST Action Gene Regulation Ensemble Effort for the Knowledge Commons (GREEKC) Consortium brought together experts in the field of transcription with the aim of providing high quality and interoperable gene regulatory data. The Gene Ontology (GO) Consortium provides strict definitions for gene product function, including factors that regulate transcription. The collaboration between the GREEKC and GO Consortia has enabled the application of those definitions to produce a new curated catalogue of over 1400 human DNA-binding transcription factors, that can be accessed at https://www.ebi.ac.uk/QuickGO/targetset/dbTF. This catalogue has facilitated an improvement in the GO annotation of human DNA-binding transcription factors and led to the GO annotation of almost sixty thousand DNA-binding transcription factors in over a hundred species. Thus, this work will aid researchers investigating the regulation of transcription in both biomedical and basic science