Multifluid, Magnetohydrodynamic Shock Waves with Grain Dynamics II. Dust and the Critical Speed for C Shocks

This is the second in a series of papers on the effects of dust on multifluid, MHD shock waves in weakly ionized molecular gas. We investigate the influence of dust on the critical shock speed, v_crit, above which C shocks cease to exist. Chernoff showed that v_crit cannot exceed the grain magnetosound speed, v_gms, if dust grains are dynamically well coupled to the magnetic field. We present numerical simulations of steady shocks where the grains may be well- or poorly coupled to the field. We use a time-dependent, multifluid MHD code that models the plasma as a system of interacting fluids: neutral particles, ions, electrons, and various ``dust fluids'' comprised of grains with different sizes and charges. Our simulations include grain inertia and grain charge fluctuations but to highlight the essential physics we assume adiabatic flow, single-size grains, and neglect the effects of chemistry. We show that the existence of a phase speed v_phi does not necessarily mean that C shocks will form for all shock speeds v_s less than v_phi. When the grains are weakly coupled to the field, steady, adiabatic shocks resemble shocks with no dust: the transition to J type flow occurs at v_crit = 2.76 v_nA, where v_nA is the neutral Alfven speed, and steady shocks with v_s > 2.76 v_nA are J shocks with magnetic precursors in the ion-electron fluid. When the grains are strongly coupled to the field, v_crit = min(2.76 v_nA, v_gms). Shocks with v_crit < v_s < v_gms have magnetic precursors in the ion-electron-dust fluid. Shocks with v_s > v_gms have no magnetic precursor in any fluid. We present time-dependent calculations to study the formation of steady multifluid shocks. The dynamics differ qualitatively depending on whether or not the grains and field are well coupled.Comment: 43 pages with 17 figures, aastex, accepted by The Astrophysical Journa

Physiological and Morphological Features Determining the Performance of the Sorghum Landraces of Northern Nigeria

Sorghum landraces from contrasting districts of northern Nigeria were grown during the 1990 rainy season to describe their physiological and morphological features. Changes in their dry matter production and yield could be predicted from thermal time to flowering (based on response to a fixed daylength) and partitioning indices. Many other morphological and physiological features, such as light-extinction coefficient, light-use efficiency, plant height, leaf area and leaf number, were either stable or varied systematically with time to flowering. Grain yields of early maturing lines were limited by low light interception from flowering to physiological maturity and those of later maturing lines by highly site-specific drought stress

On the hierarchical classification of G Protein-Coupled Receptors

Motivation: G protein-coupled receptors (GPCRs) play an important role in many physiological systems by transducing an extracellular signal into an intracellular response. Over 50% of all marketed drugs are targeted towards a GPCR. There is considerable interest in developing an algorithm that could effectively predict the function of a GPCR from its primary sequence. Such an algorithm is useful not only in identifying novel GPCR sequences but in characterizing the interrelationships between known GPCRs. Results: An alignment-free approach to GPCR classification has been developed using techniques drawn from data mining and proteochemometrics. A dataset of over 8000 sequences was constructed to train the algorithm. This represents one of the largest GPCR datasets currently available. A predictive algorithm was developed based upon the simplest reasonable numerical representation of the protein's physicochemical properties. A selective top-down approach was developed, which used a hierarchical classifier to assign sequences to subdivisions within the GPCR hierarchy. The predictive performance of the algorithm was assessed against several standard data mining classifiers and further validated against Support Vector Machine-based GPCR prediction servers. The selective top-down approach achieves significantly higher accuracy than standard data mining methods in almost all cases

Submillimeter Wave Astronomy Satellite mapping observations of water vapor around Sagittarius B2

Observations of the 1(10)-1(01) 556.936 GHz transition of ortho-water with the Submillimeter Wave Astronomy Satellite (SWAS) have revealed the presence of widespread emission and absorption by water vapor around the strong submillimeter continuum source Sagittarius B2. An incompletely-sampled spectral line map of a region of size 26 x 19 arcmin around Sgr B2 reveals three noteworthy features. First, absorption by foreground water vapor is detectable at local standard-of-rest (LSR) velocities in the range -100 to 0 km/s at almost every observed position. Second, spatially-extended emission by water is detectable at LSR velocities in the range 80 to 120 km/s at almost every observed position. This emission is attributable to the 180-pc molecular ring identified from previous observations of CO. The typical peak antenna temperature of 0.075 K for this component implies a typical water abundance of 1.2E-6 to 8E-6 relative to H2. Third, strong absorption by water is observed within 5 arcmin of Sgr B2 at LSR velocities in the range 60 to 82 km/s. An analysis of this absorption yields a H2O abundance ~ 2E-7 to 4E-7 relative to H2 if the absorbing water vapor is located within the core of Sgr B2 itself; or, alternatively, a water column density ~ 2.5E+16 to 4E+16 per cm2 if the water absorption originates in the warm, foreground layer of gas proposed previously as the origin of ammonia absorption observed toward Sgr B2.Comment: 29 pages (AASTeX), including 9 postscript figures, to appear in the Astrophysical Journa

The Spatial Distribution of Atomic Carbon Emission in the Giant Molecular Cloud NGC 604-2

We have mapped a giant molecular cloud in the giant HII region NGC 604 in M33 in the 492 GHz ^3P_1 -- ^3P_0 transition of neutral atomic carbon using the James Clerk Maxwell Telescope. We find the distribution of the [CI] emission to be asymmetric with respect to the CO J=1--0 emission, with the peak of the [CI] emission offset towards the direction of the center of the HII region. In addition, the line ratio I_{[CI]}/I_{CO} is highest (~ 0.2) facing the HII region and lowest (< 0.1) away from it. These asymmetries indicate an edge-on morphology where the [CI] emission is strongest on the side of the cloud facing the center of the HII region, and not detected at all on the opposite side This suggests that the sources of the incident flux creating C from the dissociation of CO are the massive stars of the HII region. The lowest line ratios are similar to what is observed in Galactic molecular clouds, while the highest are similar to starburst galaxies and other regions of intense star formation. The column density ratio, N(C)/N(H_2) is a few times 10^{-6}, in general agreement with models of photodissociation regions.Comment: Accepted for publication in ApJ. 8 pages, 5 figures, 3 table

The Ratio of Ortho- to Para-H2 in Photodissociation Regions

We discuss the ratio of ortho- to para-H2 in photodissociation regions (PDRs). We draw attention to an apparent confusion in the literature between the ortho-to-para ratio of molecules in FUV-pumped vibrationally excited states, and the H2 ortho-to-para abundance ratio. These ratios are not the same because the process of FUV-pumping of fluorescent H2 emission in PDRs occurs via optically thick absorption lines. Thus, gas with an equilibrium ratio of ortho- to para-H2 equal to 3 will yield FUV-pumped vibrationally excited ortho-to-para ratios smaller than 3, because the ortho-H2 pumping rates are preferentially reduced by optical depth effects. Indeed, if the ortho and para pumping lines are on the ``square root'' part of the curve-of-growth, then the expected ratio of ortho and para vibrational line strengths is the square root of 3, ~ 1.7, close to the typically observed value. Thus, contrary to what has sometimes been stated in the literature, most previous measurements of the ratio of ortho- to para-H2 in vibrationally excited states are entirely consistent with a total ortho-to-para ratio of 3, the equilibrium value for temperatures greater than 200 K. We present an analysis and several detailed models which illustrate the relationship between the total ratios of ortho- to para-H2 and the vibrationally excited ortho-to-para ratios in PDRs. Recent Infrared Space Observatory (ISO) measurements of pure rotational and vibrational H2 emissions from the PDR in the star-forming region S140 provide strong observational support for our conclusions.Comment: 23 pages (including 5 figures), LaTeX, uses aaspp4.sty, accepted for publication in Ap

Efficient calculation of van der Waals dispersion coefficients with time-dependent density functional theory in real time: application to polycyclic aromatic hydrocarbons

The van der Waals dispersion coefficients of a set of polycyclic aromatic hydrocarbons, ranging in size from the single-cycle benzene to circumovalene (C66H20), are calculated with a real-time propagation approach to time-dependent density functional theory (TDDFT). In the non-retarded regime, the Casimir-Polder integral is employed to obtain C6, once the dynamic polarizabilities have been computed at imaginary frequencies with TDDFT. On the other hand, the numerical coefficient that characterizes the fully retarded regime is obtained from the static polarizabilities. This ab initio strategy has favorable scaling with the size of the system - as demonstrated by the size of the reported molecules - and can be easily extended to obtain higher order van der Waals coefficients.Comment: submitted to J. Chem. Phy

The Structure, Kinematics and Physical Properties of the Molecular Gas in the Starburst Nucleus of NGC 253

We present 5.2" x 2.6" resolution interferometry of CO J=1-0 emission from the starburst galaxy NGC 253. The high spatial resolution of these new data, in combination with recent high resolution maps of 13CO, HCN and near-infrared emission, allow us for the first time to link unambiguously the gas properties in the central starburst of NGC 253 with its bar dynamics. We confirm that the star formation results from bar-driven gas flows as seen in "twin peaks" galaxies. Two distinct kinematic features are evident from the CO map and position-velocity diagram: a group of clouds rotating as a solid body about the kinematic center of the galaxy, and a more extended gas component associated with the near-infrared bar. We model the line intensities of CO, HCN and 13CO to infer the physical conditions of the gas in the nucleus of NGC 253. The results indicate increased volume densities around the radio nucleus in a twin-peaks morphology. Compared with the CO kinematics, the gas densities appear highest near the radius of a likely inner Linblad resonance, and slightly lead the bar minor axis. This result is similar to observations of the face-on, twin-peaks galaxy NGC 6951, and is consistent with models of starburst generation due to gas inflow along a bar.Comment: To appear in the ApJ, 28 pages, 12 figure file

Detection of lipocortin 1 in human lung lavage fluid: lipocortin degradation as a possible proteolytic mechanism in the control of inflammatory mediators and inflammation.

Lipocortins are structurally related, glucocorticoid-inducible proteins that inhibit phospholipase A2 (PLA2), thereby reducing the liberation of arachidonic acid from phospholipids and so limiting the synthesis of eicosanoid inflammatory mediators. This study is the first demonstration of one lipocortin, lipocortin 1 (Lc 1; 37 kDa), in human lung lavage supernatants. In lavage fluid from healthy volunteers, a higher percentage (greater than 70%) of the detected Lc 1 was in its native form, compared to that from patients with abnormal lungs. In patients' lavage fluids, Lc 1 was more likely to be partially degraded (34 kDa). In abnormal bronchoalveolar lavage fluid (BALF), the more polymorphonuclear neutrophils (PMN)/lavage, the lower the proportion of Lc 1 in the native (37 kDa) form (n = 7 pairs, rs = -0.8214, p less than 0.05). Furthermore, when BALF cells were cultured and the harvested conditioned media incubated with pure human recombinant Lc 1, degradation of the 37 kDa form increased with the percentage of PMN (n = 10 pairs, s = -0.7200 after 1 hr; n = 6 pairs, rs = -0.9241 after 6 hr). These results suggest that factors released from the PMN are responsible for Lc 1 degradation in man. When recombinant human Lc 1 was incubated with human neutrophil elastase, the enzyme degraded Lc 1 in a dose-dependent way, suggesting that neutrophil elastase may be one such factor. Since PMNs are ubiquitous at sites of inflammation, it is possible that Lc 1 degradation is a permissive mechanism, which ensures that sufficient inflammation occurs to destroy the provocative stimulus. However, it is equally possible that, in some circumstances, the mechanism may be pathological and that the inactivation of Lc 1 leads to chronic, uncontrolled inflammation

Complex Langevin Equation and the Many-Fermion Problem

We study the utility of a complex Langevin (CL) equation as an alternative for the Monte Carlo (MC) procedure in the evaluation of expectation values occurring in fermionic many-body problems. We find that a CL approach is natural in cases where non-positive definite probability measures occur, and remains accurate even when the corresponding MC calculation develops a severe ``sign problem''. While the convergence of CL averages cannot be guaranteed in principle, we show how convergent results can be obtained in three examples ranging from simple one-dimensional integrals over quantum mechanical models to a schematic shell model path integral.Comment: 19 pages, 10 PS figures embedded in tex