Caracterización funcional de la proteína de capa S (S-layer) de Lactobacillus acidophilus ATCC 4356

La envoltura bacteriana de Lactobacillus acidophilus ATCC 4356 tiene las características de una bacteria Gram positiva, pero además posee proteínas de superficie o Surface layers (S-layers), las cuales se asocian con roles de protección contra enzimas hidrolíticas, cambios de pH y estrés, la captación de moléculas y iones, y ayudan a mantener la forma y rigidez de la célula. Además, varios reportes sugieren que en los lactobacilos la S-layer tendría un rol en las propiedades probióticas de las cepas que la poseen, sin embargo las funciones y los mecanismos involucrados están poco descriptos. El objetivo general de esta Tesis doctoral fue caracterizar funcional y estructuralmente la S-layer de Lactobacillus acidophilus ATCC 4356. Los resultados obtenidos permitieron confirmar que la S-layer presenta un comportamiento homólogo a las lectinas, capaz de interactuar con eritrocitos de carnero, células bacterianas, levaduras, virus y células eucariotas. Respecto a los posibles carbohidratos con los cuales interactúa, se observó un comportamiento mixto asemejándose tanto a las lectinas que reconocen quitina/N-acetilglucosamina como a las de reconocimiento de ácido siálico/manosa. Mediante diferentes ensayos, como el clonado y expresión de proteínas o partes de la proteína conjugadas con la proteína verde fluorescente GFP, se logró identificar los dos dominios de reconocimiento a carbohidratos (CRD) ubicados en la porción carboxilo-terminal y predichos del análisis in silico de la proteína. La actividad de lectina depende de la presencia de estos CRD. También quedó demostrado que el ácido lipoteicoico sirve como un ancla para la proteína SlpA. Además, fue posible determinar cómo se modifica la expresión de los tres genes que codifican para S-layer en esta cepa: slpA, slpB y slpX, en respuesta a cambios ambientales como la alta concentración salina. Se observaron cambios en la expresión génica de los ARNm slpA y la slpX pero no slpB. En consecuencia, la cantidad de las proteínas SlpA y SlpX se modifican no solo por la condición de alta sal (NaCl 0,6 M) sino también por la fase de crecimiento. Por otro lado, en los últimos años se han desarrollado o sugerido diversas aplicaciones biológicas para las proteínas S-layers de Lactobacillus, en este trabajo se pudo establecer que la proteína S-layer disminuye la adherencia y la formación de biopelículas de Pseudomonas aeruginosa en superficies bióticas y abióticas, respectivamente. Además fue capaz de modular la infección de diferentes virus, con una notable actividad pro-viral, facilitando las etapas tempranas del ciclo de infección de tres virus empleados como vectores oncolíticos: el herpes virus simplex tipo 1 (HSV-1), el virus de la estomatitis vesicular y el adenovirus 5. La proteína S-layer también fue capaz de proteger al virus HSV-1 de la inactivación térmica por calor.En conjunto estos resultados aportan a comprender las características estructurales y funcionales de la S-layer, y permiten proponer futuras aplicaciones biológicas.Lactobacillus acidophilus ATCC 4356 cell wall has the characteristics of Gram-positive bacteria, and exhibits Surface layers proteins (S-layer), which protect the bacteria against hydrolytic enzymes; stress and pH changes interact to molecules and ions and maintain the shape and rigidity of the cell. Several reports suggest that Lactobacillus Slayer may be involved in the probiotic properties of the strain, though its function and mechanisms are not yet fully elucidated. The general objective of this thesis was to characterize functional and structurally Lactobacillus acidophilus ATCC 4356’s S-layers. The results obtained confirmed that S-layer presents homologous behaviour to lectins, interacting with sheep erythrocytes, bacteria, yeasts, virus and eukaryotic cells. Regarding the interaction with carbohydrates, it showed a complex behaviour, similar to lectins that recognize either chitin/N-acetilglucosamine or the sialic acid/mannose. By different assays such as cloning and expression of proteins or chimeric fragments conjugated with green fluorescent protein GFP, it was possible to identify two carbohydrate recognition domains (CRD) localized at the C-terminus portion which had been predicted in silico. The lectin activity depends of these CRD. It was also shown that lipoteic acid serves as an anchor for the SlpA protein. Also, it was determined that the expression of the three genes that encodes for S-layer in this strain, slpA, slpB y slpX, is regulated by environmental factors such as high saline concentration. Changes in gene expression of slpA and slpX mRNA but not of slpB were observed. It was also noted that the amount of SlpA and SlpX proteins is modified not only by salt concentration (NaCl 0,6M) but also by growth phase. On the other hand, during the last years several biological applications have been developed for Lactobacillus S-layer protein and in this work it was stablished that S-layer diminishes the adherence and biofilm formation of Pseudomonas aeruginosa on both biotic and abiotic surfaces, respectively. Besides, it was able to modulate the infection of different viruses, exhibiting a noticeable pro-viral activity, facilitating early stages of infection of three of the viruses that are useful as oncolytic vectors: herpes simplex type 1 virus (HSV-1), vesicular stomatitis and adenovirus 5. The S-layer protein was able to protect HSV-1 from heat inactivation. Altogether, these results contribute to comprehend the structural and functional characteristics of S-layer, and allow propose future biological applications.Fil: Fina Martin, Joaquina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; Argentin

Draft genome sequence of Lactobacillus helveticus ATCC 12046

Lactobacillus helveticus is a lactic acid bacterium used traditionally in the dairy industry, especially in the manufacture of cheeses. We present here the 2,141,841-bp draft genome sequence of L. helveticus strain ATCC 12046, a potential starter strain for improving cheese production.Fil: Ruzal, Sandra Mónica. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Palomino, Maria Mercedes. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Fina Martin, Joaquina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Fernández Do Porto, Darío Augusto. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Centro de Formación e Investigación en Enseñanza de las Ciencias; Argentin

Development of an Antigen Delivery Platform Using Lactobacillus acidophilus Decorated With Heterologous Proteins: A Sheep in Wolf’s Clothing Story

S-layers are bacterial structures present on the surface of several Gram-positive and Gram-negative bacteria that play a role in bacterial protection. In Lactobacillus acidophilus (L. acidophilus ATCC 4356), the S-layer is mainly composed of the protein SlpA. A tandem of two copies of the protein domain SLP-A (pfam: 03217) was identified at the C-terminal of SlpA, being this double SLP-A protein domain (in short dSLP-A) necessary and sufficient for the association of the protein to the L. acidophilus cell wall. A variety of proteins fused to the dSLP-A domain were able to spontaneously associate with high affinity to the cell wall of L. acidophilus and Bacillus subtilis var. natto, in a process that we termed decoration. Binding of dSLP-A-containing-proteins to L. acidophilus was stable at conditions that mimic the gastrointestinal transit in terms of pH, proteases, and bile salts. To evaluate if protein decoration of L. acidophilus can be adapted to generate an oral vaccine platform, a chimeric antigen derived from the bacterial pathogen Shiga-toxin-producing Escherichia coli (STEC) was constructed by fusing the sequences encoding the polypeptides EspA36–192, Intimin653–953, Tir240–378, and H7 flagellin352–374 (EITH7) to the dSLP-A domain (EITH7-dSLP-A). Recombinantly expressed EITH7-dSLP-A protein was affinity purified and combined with L. acidophilus cultures to allow the association of the chimeric antigen to the bacterial surface. EITH7-decorated L. acidophilus was orally administered to BALB/c mice and the induction of anti-EITH7 specific antibodies in sera and feces determined by ELISA. Mice presenting significantly higher anti-EITH7 antibodies titers were able to control more efficiently an experimental STEC infection than mice that received the non-decorated L. acidophilus carrier, indicating that antigen-decorated L. acidophilus can be adapted as a mucosal immunization delivery platform to elicit a protective immune response for vaccine purposes.Fil: Uriza, Paula Jimena. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. - Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Biotecnológicas; ArgentinaFil: Trautman, Cynthia Veronica. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. - Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Biotecnológicas; ArgentinaFil: Palomino, Maria Mercedes. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Fina Martin, Joaquina. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Ruzal, Sandra Mónica. Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Ciudad Universitaria. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales. Universidad de Buenos Aires. Facultad de Ciencias Exactas y Naturales. Instituto de Química Biológica de la Facultad de Ciencias Exactas y Naturales; ArgentinaFil: Roset, Mara Sabrina. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. - Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Biotecnológicas; ArgentinaFil: Briones, Carlos Gabriel. Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. - Consejo Nacional de Investigaciones Científicas y Técnicas. Oficina de Coordinación Administrativa Parque Centenario. Instituto de Investigaciones Biotecnológicas; Argentin

The immunohistochemical expression of programmed death ligand 1 (PD-L1) is affected by sample overfixation

Humanized antibodies targeting programmed death receptor 1 (PD-1) or its ligand (PD-L1) have been approved for the treatment of different cancers. Some of these antibodies show a correlation between the tissue expression of PD-L1 and response. Evaluation of PD-L1 expression presents multiple challenges, but some preanalytical issues such as tissue fixation have been scarcely evaluated. With the hypothesis that immunohistochemical staining of PD-L1 may be impacted by the time of specimen fixation, we evaluated differences in its expression in tonsil samples exposed to predefined fixation times. Random nontumoral tonsillectomy specimens were blindly evaluated in tissue microarray slides after staining with SP142 and SP263 antibodies. With fixation times ranging from 12 to 72 hours, between 2.8% and 6.1% of the samples were considered to be suboptimally stained, with no differences between the 2 antibodies within these fixation times. A significantly higher proportion of samples exposed to a fixation time of 96 hours presented suboptimal immunostaining (15.6%, P72 hours. Samples exposed to formaldehyde for longer periods presented suboptimal results for both clones, but the SP142 antibody presented a significantly lower tolerance to formalin overexposure than SP263. These results indicate the relevance of a controlled preanalytical processing of samples and particularly the length of fixation of tumor specimens

Small town research in Germany - status quo and recommendations

Urban studies in Germany are traditionally oriented towards large cities. The structures, meanings and functions of small towns are not sufficiently perceived and differentiated in scientific or political debates. Adequate research on small towns requires systematic, comparative, inter- and transdisciplinary approaches. Traditional attributions should be questioned critically and small towns should be examined empirically in their diversity and differentiation. This involves paying attention to external influences and heterogeneous internal structures as well as to regional functions and interdependencies. The availability and generation of statistical data, which also make small-scale analyses possible, are just as necessary as more comprehensive studies, which go beyond limited case studies. Finally, also research funding and academic teaching should address small towns more systematically than it has been the case in the past. This position paper presents recommendations for research, university teaching, official statistics and research funding in the field of small town research. The Ad-hoc Working Group focused on small town research in Germany and German-language literature, respectively

Frequency and genome load of Epstein-Barr virus in 509 breast cancers from different geographical areas

Since the few data exploring a possible association between Epstein–Barr virus (EBV) and breast cancer are conflicting, we investigated this association together with the influences of geographical areas. 509 breast cancers were sampled from areas with varying risks of nasopharynx carcinoma (NPC) such as North Africa (Algeria and Tunisia, high-risk area); southern France (Marseille, intermediate-risk area); and northern Europe (northern France, the Netherlands and Denmark; low-risk areas). Polymerase chain reaction (PCR) of a subregion of EBV BamHIC encoding the EBERs demonstrated that 31.8% of the tumours contained the viral genome. No significant differences were observed among the geographical areas. However, positive samples showed higher loads of the EBV genome in the NPC high- and intermediate-risk areas than in the low-risk areas. EBV type 1 was the dominant strain. In situ hybridization studies using a35S-labelled riboprobe for EBER1 and a laser capture microdissection, combined with quantitative PCR, showed that EBV localization was restricted to some tumour epithelial cell clusters. EBV could not be detected in the stroma. Considering the whole population covered, the presence of the EBV genome was not correlated with age, menopausal status, tumour, size, nodal status or histological grade. © 2001 Cancer Research Campaign http://www. bjcancer.co

Prognostic Role of Neutrophil, Monocyte and Platelet to Lymphocyte Ratios in Advanced Ovarian Cancer According to the Time of Debulking Surgery

Despite a multimodal radical treatment, mortality of advanced epithelial ovarian cancer (AEOC) remains high. Host-related factors, such as systemic inflammatory response and its interplay with the immune system, remain underexplored. We hypothesized that the prognostic impact of this response could vary between patients undergoing primary debulking surgery (PDS) and those undergoing interval debulking surgery (IDS). Therefore, we evaluated the outcomes of two surgical groups of newly diagnosed AEOC patients according to the neutrophil, monocyte and platelet to lymphocyte ratios (NLR, MLR, PLR), taking median ratio values as cutoffs. In the PDS group (n = 61), low NLR and PLR subgroups showed significantly better overall survival (not reached (NR) vs. 72.7 months, 95% confidence interval [CI]: 40.9-95.2, p = 0.019; and NR vs. 56.1 months, 95% CI: 40.9-95.2, p = 0.004, respectively) than those with high values. Similar results were observed in progression free survival. NLR and PLR-high values resulted in negative prognostic factors, adjusting for residual disease, BRCA1/2 status and stage (HR 2.48, 95% CI: 1.03-5.99, p = 0.043, and HR 2.91, 95% CI: 1.11-7.64, p = 0.03, respectively). In the IDS group (n = 85), ratios were not significant prognostic factors. We conclude that NLR and PLR may have prognostic value in the PDS setting, but none in IDS, suggesting that time of surgery can modulate the prognostic impact of baseline complete blood count (CBC)

Urea-Modified Carbon Nitrides: Enhancing Photocatalytic Hydrogen Evolution by Rational Defect Engineering

The primary amine groups on the heptazine-based polymer melon, also known as graphitic carbon nitride (g-C3N4), can be replaced by urea groups using a two-step postsynthetic functionalization. Under simulated sunlight and optimum Pt loading, this urea-functionalized carbon nitride has one of the highest activities among organic and polymeric photocatalysts for hydrogen evolution with methanol as sacrificial donor, reaching an apparent quantum efficiency of 18% and nearly 30 times the hydrogen evolution rate compared to the nonfunctionalized counterpart. In the absence of Pt, the urea-derivatized material evolves hydrogen at a rate over four times that of the nonfunctionalized one. Since defects are conventionally accepted to be the active sites in graphitic carbon nitride for photocatalysis, the work here is a demonstrated example of defect engineering, where the catalytically relevant defect is inserted rationally for improving the intrinsic, rather than extrinsic, photocatalytic performance. Furthermore, the work provides a retrodictive explanation for the general observation that g-C3N4 prepared from urea performs better than those prepared from dicyandiamide and melamine. In-depth analyses of the spent photocatalysts and computational modeling suggest that inserting the urea group causes a metal-support interaction with the Pt cocatalyst, thus facilitating interfacial charge transfer to the hydrogen evolving centers

Kleinstadtforschung

Stadtforschung ist in Deutschland traditionell großstadtorientiert. Kleinstädte werden weder in wissenschaftlichen noch in politischen Auseinandersetzungen in ihren Strukturen, Bedeutungen und Funktionen hinreichend wahrgenommen und differenziert betrachtet. Eine adäquate Erforschung von Kleinstädten erfordert systematische, vergleichende sowie inter- und transdisziplinäre Ansätze. Traditionelle Zuschreibungen sollten kritisch hinterfragt und Kleinstädte in ihrer Vielfalt und Differenziertheit empirisch untersucht werden. Dabei geht es sowohl um die äußeren Prägungen und heterogenen inneren Strukturen als auch um regionale Funktionen und Verflechtungen. Die Verfügbarkeit bzw. Generierung von statistischen Daten, die auch kleinräumige Analysen ermöglichen, sind dabei ebenso notwendig wie umfassendere Studien, die über begrenzte und anlassbezogene Einzelfalluntersuchungen hinausgehen. Schließlich sollten auch die Forschungsförderung und die akademische Lehre Kleinstädte systematischer als bislang adressieren. Dieses Positionspapier enthält Empfehlungen für Wissenschaft, Lehre, amtliche Statistik und Forschungsförderung aus der Perspektive der Kleinstadtforschung.Urban studies in Germany are traditionally oriented towards large cities. The structures, meanings and functions of small towns are not sufficiently perceived and differentiated in scientific or political debates. Adequate research on small towns requires systematic, comparative, inter- and transdisciplinary approaches. Traditional attributions should be questioned critically and small towns should be examined empirically in their diversity and differentiation. This involves paying attention to external influences and heterogeneous internal structures as well as to regional functions and interdependencies. The availability and generation of statistical data, which also make small-scale analyses possible, are just as necessary as more comprehensive studies, which go beyond bounded and case studies. Finally, research funding and academic teaching should address small towns more systematically than has been the case in the past. This position paper presents recommendations for research, university teaching, official statistics and research funding in the field of small town research