Origins of Replication in Sorangium cellulosum and Microcystis aeruginosa

The genome of Sorangium cellulosum has recently been completely sequenced, and it is the largest bacterial genome sequenced so far. In their report, Schneiker et al. (in Complete genome sequence of the myxobacterium Sorangium cellulosum, Nat. Biotechnol., 2007, 25, 1281–1289) concluded that ‘In the absence of the GC-skew inversion typically seen at the replication origin of bacterial chromosomes, it was not possible to discern the location of oriC’. In addition, the complete genome of Microcystis aeruginosa NIES-843 has also been recently sequenced, and in this report, Kaneko et al. (in Complete genomic structure of the bloom-forming toxic cyanobacterium Microcystis aeruginosa NIES-843, DNA Res., 2007, 14, 247–256) concluded that ‘there was no characteristic pattern, according to GC skew analysis’. Therefore, oriC locations of the above genomes remain unsolved. Using Ori-Finder, a recently developed computer program, in both genomes, we have identified candidate oriC regions that have almost all sequence hallmarks of bacterial oriCs, such as asymmetrical nucleotide distributions, being adjacent to the dnaN gene, and containing DnaA boxes and repeat elements

Radiative pion capture by a nucleon

The differential cross sections for $\pi^- p \to \gamma n$ and $\pi^+ n \to \gamma p$ are computed up to $O(p^3)$ in heavy baryon chiral perturbation theory (HBChPT). The expressions at $O(p)$ and $O(p^2)$ have no free parameters. There are three unknown parameters at $O(p^3)$, low energy constants of the HBChPT Lagrangian, which are determined by fitting to experimental data. Two acceptable fits are obtained, which can be separated by comparing with earlier dispersion relation calculations of the inverse process. Expressions for the multipoles, with emphasis on the p-wave multipoles, are obtained and evaluated at threshold. Generally the results obtained from the best of the two fits are in good agreement with the dispersion relation predictions.Comment: 24 pages, Latex, using RevTe

Properties of Regge Trajectories

Early Chew-Frautschi plots show that meson and baryon Regge trajectoies are approximately linear and non-intersecting. In this paper, we reconstruct all Regge trajectories from the most recent data. Our plots show that meson trajectories are non-linear and intersecting. We also show that all current meson Regge trajectories models are ruled out by data.Comment: 30 pages, latex, 18 figures, to be published in Physical Review

Analytic Confinement and Regge Trajectories

A simple relativistic quantum field model with the Yukawa-type interaction is considered to demonstrate that the analytic confinement of the constituent ("quarks") and carrier ("gluons") particles explains qualitatively the basic dynamical properties of the spectrum of mesons considered as two-particle stable bound states of quarks and gluons: the quarks and gluons are confined, the glueballs represent bound states of massless gluons, the masses of mesons are larger than the sum of the constituent quark masses and the Regge trajectories of mesonic orbital excitations are almost linear.Comment: RevTeX, 16 pages, 3 figures and 2 table

Balancing Minimum Spanning and Shortest Path Trees

This paper give a simple linear-time algorithm that, given a weighted digraph, finds a spanning tree that simultaneously approximates a shortest-path tree and a minimum spanning tree. The algorithm provides a continuous trade-off: given the two trees and epsilon > 0, the algorithm returns a spanning tree in which the distance between any vertex and the root of the shortest-path tree is at most 1+epsilon times the shortest-path distance, and yet the total weight of the tree is at most 1+2/epsilon times the weight of a minimum spanning tree. This is the best tradeoff possible. The paper also describes a fast parallel implementation.Comment: conference version: ACM-SIAM Symposium on Discrete Algorithms (1993

Extraction of the πNN\pi NN coupling constant from NN scattering data

We reexamine Chew's method for extracting the $\pi NN$ coupling constant from np differential cross section measurements. Values for this coupling are extracted below 350 MeV, in the potential model region, and up to 1 GeV. The analyses to 1~GeV have utilized 55 data sets. We compare these results to those obtained via $\chi^2$ mapping techniques. We find that these two methods give consistent results which are in agreement with previous Nijmegen determinations.Comment: 12 pages of text plus 2 figures. Revtex file and postscript figures available via anonymous FTP at ftp://clsaid.phys.vt.edu/pub/n

Body-assisted van der Waals interaction between two atoms

Using fourth-order perturbation theory, a general formula for the van der Waals potential of two neutral, unpolarized, ground-state atoms in the presence of an arbitrary arrangement of dispersing and absorbing magnetodielectric bodies is derived. The theory is applied to two atoms in bulk material and in front of a planar multilayer system, with special emphasis on the cases of a perfectly reflecting plate and a semi-infinite half space. It is demonstrated that the enhancement and reduction of the two-atom interaction due to the presence of a perfectly reflecting plate can be understood, at least in the nonretarded limit, by using the method of image charges. For the semi-infinite half space, both analytical and numerical results are presented.Comment: 17 pages, 9 figure

Hybrid viscosity and the magnetoviscous instability in hot, collisionless accretion disks

We aim to illustrate the role of hot protons in enhancing the magnetorotational instability (MRI) via the ``hybrid'' viscosity, which is due to the redirection of protons interacting with static magnetic field perturbations, and to establish that it is the only relevant mechanism in this situation. It has recently been shown by Balbus \cite{PBM1} and Islam & Balbus \cite{PBM11} using a fluid approach that viscous momentum transport is key to the development of the MRI in accretion disks for a wide range of parameters. However, their results do not apply in hot, advection-dominated disks, which are collisionless. We develop a fluid picture using the hybrid viscosity mechanism, that applies in the collisionless limit. We demonstrate that viscous effects arising from this mechanism can significantly enhance the growth of the MRI as long as the plasma \beta \gapprox 80. Our results facilitate for the first time a direct comparison between the MHD and quasi-kinetic treatments of the magnetoviscous instability in hot, collisionless disks.Comment: To appear in the proceedings of the first Kodai-Trieste workshop on Plasma Astrophysics (Aug 27-Sept 07 2007), Springer Astrophysics and Space Science Proceedings serie