How to kill epsilons with a dagger: a coalgebraic take on systems with algebraic label structure

We propose an abstract framework for modeling state-based systems with internal behavior as e.g. given by silent or ϵ-transitions. Our approach employs monads with a parametrized fixpoint operator † to give a semantics to those systems and implement a sound procedure of abstraction of the internal transitions, whose labels are seen as the unit of a free monoid. More broadly, our approach extends the standard coalgebraic framework for state-based systems by taking into account the algebraic structure of the labels of their transitions. This allows to consider a wide range of other examples, including Mazurkiewicz traces for concurrent systems.Funded by the ERDF through the Programme COMPETE and by the Portuguese Foundation for Science and Technology, project ref. FCOMP-01-0124-FEDER-020537 and SFRH/BPD/71956/2010. Acknowledge support by project ANR 12IS0 2001 PACE

Spin dynamics in high-TCT_C superconductors

Key features of antiferromagnetic dynamical correlations in high-$T_C$ superconductors cuprates are discussed. In underdoped regime, the sharp resonance peak, occuring exclusively in the SC state, is accompanied by a broader contribution located around $\sim$ 30 meV which remains above $T_C$. Their interplay may induce incommensurate structure in the superconducting state.Comment: HTS99 Proceedings Miami (January 7-11 1999

Superconductivity-Induced Anomalies in the Spin Excitation Spectra of Underdoped YBa_2 Cu_3 O_{6+x}

Polarized and unpolarized neutron scattering has been used to determine the effect of superconductivity on the magnetic excitation spectra of YBa_2 Cu_3 O_{6.5} (T_c = 52K) and YBa_2 Cu_3 O_{6.7} (T_c = 67K). Pronounced enhancements of the spectral weight centered around 25 meV and 33 meV, respectively, are observed below T_c in both crystals, compensated predominantly by a loss of spectral weight at higher energies. The data provide important clues to the origin of the 40 meV magnetic resonance peak in YBa_2 Cu_3 O_7.Comment: LaTex, 4 pages, 4 ps figures. to appear in Phys. Rev. Let

High energy spin excitations in YBa_2 Cu_3 O_{6.5}

Inelastic neutron scattering has been used to obtain a comprehensive description of the absolute dynamical spin susceptibility $\chi'' (q,\omega)$ of the underdoped superconducting cuprate YBa_2 Cu_3 O_{6.5} ($T_c = 52 K$) over a wide range of energies and temperatures ($2 meV \leq \hbar \omega \leq 120 meV$ and $5K \leq T \leq 200K$). Spin excitations of two different symmetries (even and odd under exchange of two adjacent CuO_2 layers) are observed which, surprisingly, are characterized by different temperature dependences. The excitations show dispersive behavior at high energies.Comment: 15 pages, 5 figure

Effect of Nonmagnetic Impurities on the Magnetic Resonance Peak in YBa2Cu3O7

The magnetic excitation spectrum of a YBa_2 Cu_3 O_7 crystal containing 0.5% of nonmagnetic (Zn) impurities has been determined by inelastic neutron scattering. Whereas in the pure system a sharp resonance peak at E ~ 40 meV is observed exclusively below the superconducting transition temperature T_c, the magnetic response in the Zn-substituted system is broadened significantly and vanishes at a temperature much higher than T_c. The energy-integrated spectral weight observed near q = (pi,pi) increases with Zn substitution, and only about half of the spectral weight is removed at T_c

Spin Susceptibility in Underdoped YBa2Cu3O6+x\bf YBa_2Cu_3O_{6+x}

We report a comprehensive polarized and unpolarized neutron scattering study of the evolution of the dynamical spin susceptibility with temperature and doping in three underdoped single crystals of the \YBCO{6+x} high temperature superconductor: \YBCO{6.5} (Tc = 52 K), \YBCO{6.7} (Tc = 67 K), and \YBCO{6.85} (T_c = 87 K). Theoretical implications of these data are discussed, and a critique of recent attempts to relate the spin excitations to the thermodynamics of high temperature superconductors is given.Comment: minor revisions, to appear in PR

Combining Effects and Coeffects via Grading

This is the author accepted manuscript. It is currently under an indefinite embargo pending publication by the Association for Computing Machinery.$\textit{Effects}$ and $\textit{coeffects}$ are two general, complementary aspects of program behaviour. They roughly correspond to computations which change the execution context (effects) versus computations which make demands on the context (coeffects). Effectful features include partiality, non-determinism, input-output, state, and exceptions. Coeffectful features include resource demands, variable access, notions of linearity, and data input requirements. The effectful or coeffectful behaviour of a program can be captured and described via type-based analyses, with fine grained information provided by monoidal effect annotations and semiring coeffects. Various recent work has proposed models for such typed calculi in terms of $\textit{graded (strong) monads}$ for effects and $\textit{graded (monoidal) comonads}$ for coeffects. Effects and coeffects have been studied separately so far, but in practice many computations are both effectful and coeffectful, e.g., possibly throwing exceptions but with resource requirements. To remedy this, we introduce a new general calculus with a combined $\textit{effect-coeffect system}$. This can describe both the $\textit{changes}$ and $\textit{requirements}$ that a program has on its context, as well as interactions between these effectful and coeffectful features of computation. The effect-coeffect system has a denotational model in terms of effect-graded monads and coeffect-graded comonads where interaction is expressed via the novel concept of $\textit{graded distributive laws}$. This graded semantics unifies the syntactic type theory with the denotational model. We show that our calculus can be instantiated to describe in a natural way various different kinds of interaction between a program and its evaluation context.Orchard was supported by EPSRC grant EP/M026124/1 and EP/K011715/1 (whilst previously at Imperial College London), Katsumata by JSPS KAKENHI grant JP15K00014, Uustalu by Estonian Min. of Educ. and Res. grant IUT33-13 and Estonian Sci. Found. grant 9475. Gaboardi’s work was done in part while at the University of Dundee, UK supported by EPSRC grant EP/M022358/1

Friends with benefits: implementing corecursion in foundational proof assistants

We introduce AmiCo, a tool that extends a proof assistant, Isabelle/HOL, with flexible function definitions well beyond primitive corecursion. All definitions are certified by the assistant’s inference kernel to guard against inconsistencies. A central notion is that of friends: functions that preserve the productivity of their arguments and that are allowed in corecursive call contexts. As new friends are registered, corecursion benefits by becoming more expressive. We describe this process and its implementation, from the user’s specification to the synthesis of a higher-order definition to the registration of a friend. We show some substantial case studies where our approach makes a difference

Eliminating Rabies in Estonia

The compulsory vaccination of pets, the recommended vaccination of farm animals in grazing areas and the extermination of stray animals did not succeed in eliminating rabies in Estonia because the virus was maintained in two main wildlife reservoirs, foxes and raccoon dogs. These two species became a priority target therefore in order to control rabies. Supported by the European Community, successive oral vaccination (OV) campaigns were conducted twice a year using Rabigen® SAG2 baits, beginning in autumn 2005 in North Estonia. They were then extended to the whole territory from spring 2006. Following the vaccination campaigns, the incidence of rabies cases dramatically decreased, with 266 cases in 2005, 114 in 2006, four in 2007 and three in 2008. Since March 2008, no rabies cases have been detected in Estonia other than three cases reported in summer 2009 and one case in January 2011, all in areas close to the South-Eastern border with Russia. The bait uptake was satisfactory, with tetracycline positivity rates ranging from 85% to 93% in foxes and from 82% to 88% in raccoon dogs. Immunisation rates evaluated by ELISA ranged from 34% to 55% in foxes and from 38% to 55% in raccoon dogs. The rabies situation in Estonia was compared to that of the other two Baltic States, Latvia and Lithuania. Despite regular OV campaigns conducted throughout their territory since 2006, and an improvement in the epidemiological situation, rabies has still not been eradicated in these countries. An analysis of the number of baits distributed and the funding allocated by the European Commission showed that the strategy for rabies control is more cost-effective in Estonia than in Latvia and Lithuania

The Prehistory of Potyviruses: Their Initial Radiation Was during the Dawn of Agriculture

Background: Potyviruses are found world wide, are spread by probing aphids and cause considerable crop damage. Potyvirus is one of the two largest plant virus genera and contains about 15% of all named plant virus species. When and why did the potyviruses become so numerous? Here we answer the first question and discuss the other. Methods and Findings: We have inferred the phylogenies of the partial coat protein gene sequences of about 50 potyviruses, and studied in detail the phylogenies of some using various methods and evolutionary models. Their phylogenies have been calibrated using historical isolation and outbreak events: the plum pox virus epidemic which swept through Europe in the 20th century, incursions of potyviruses into Australia after agriculture was established by European colonists, the likely transport of cowpea aphid-borne mosaic virus in cowpea seed from Africa to the Americas with the 16th century slave trade and the similar transport of papaya ringspot virus from India to the Americas. Conclusions/Significance: Our studies indicate that the partial coat protein genes of potyviruses have an evolutionary rate of about 1.1561024 nucleotide substitutions/site/year, and the initial radiation of the potyviruses occurred only about 6,600 years ago, and hence coincided with the dawn of agriculture. We discuss the ways in which agriculture may have triggered the prehistoric emergence of potyviruses and fostered their speciation