Preregistration in diverse contexts: a preregistration template for the application of cognitive models.

In recent years, open science practices have become increasingly popular in psychology and related sciences. These practices aim to increase rigour and transparency in science as a potential response to the challenges posed by the replication crisis. Many of these reforms-including the increasingly used preregistration-have been designed for purely experimental work that tests straightforward hypotheses with standard inferential statistical analyses, such as assessing whether an experimental manipulation has an effect on a variable of interest. But psychology is a diverse field of research. The somewhat narrow focus of the prevalent discussions surrounding and templates for preregistration has led to debates on how appropriate these reforms are for areas of research with more diverse hypotheses and more intricate methods of analysis, such as cognitive modelling research within mathematical psychology. Our article attempts to bridge the gap between open science and mathematical psychology, focusing on the type of cognitive modelling that Crüwell et al. (Crüwell S, Stefan AM, Evans NJ. 2019 Robust standards in cognitive science. Comput. Brain Behav. 2, 255-265) labelled model application, where researchers apply a cognitive model as a measurement tool to test hypotheses about parameters of the cognitive model. Specifically, we (i) discuss several potential researcher degrees of freedom within model application, (ii) provide the first preregistration template for model application and (iii) provide an example of a preregistered model application using our preregistration template. More broadly, we hope that our discussions and concrete proposals constructively advance the mostly abstract current debate surrounding preregistration in cognitive modelling, and provide a guide for how preregistration templates may be developed in other diverse or intricate research contexts

Development of an Open Source Connected Autonomous Rover (OSCAR) for Under Canopy Row Crop Sampling

High density sampling of row cropping systems can enable a variety of agronomic research that is currently too labor intensive to feasibly pursue by hand. While aerial drones are commonly used to collect field data, there are numerous measurements of interest that require sensors deployed under the crop canopy. This project examines the development of a robust autonomous rover (OSCAR) that can travel through rows of corn throughout the growing season. OSCAR has a 22” wheelbase with differential steering allowing it to navigate through corn rows without damaging the plants. OSCAR is equipped with an RTK GNSS module and stereo vision camera which allows it to navigate through rows autonomously. The robot’s ability to reliably navigate and avoid obstacles continues to be improved upon in simulation and in real fields

Sher 25: pulsating but apparently alone

The blue supergiant Sher25 is surrounded by an asymmetric, hourglass-shaped circumstellar nebula, which shows similarities to the triple-ring structure seen around SN1987A. From optical spectroscopy over six consecutive nights, we detect periodic radial velocity variations in the stellar spectrum of Sher25 with a peak-to-peak amplitude of ~12 km/s on a timescale of about 6 days, confirming the tentative detec-tion of similar variations by Hendry et al. From consideration of the amplitude and timescale of the signal, coupled with observed line profile variations, we propose that the physical origin of these variations is related to pulsations in the stellar atmosphere, rejecting the previous hypothesis of a massive, short-period binary companion. The radial velocities of two other blue supergiants with similar bipolar nebulae, SBW1 and HD 168625, were also monitored over the course of six nights, but these did not display any significant radial velocity variations.Comment: 9 pages, 7 figures. Accepted for publication in MNRA

The effect of whisker movement on radial distanceestimation: A case study in comparative robotics

Whisker movement has been shown to be under active control in certain specialistanimals such as rats and mice. Though this whisker movement is well characterized,the role and effect of this movement on subsequent sensing is poorly understood. Onemethod for investigating this phenomena is to generate artificial whisker deflections withrobotic hardware under different movement conditions. A limitation of this approachis that assumptions must be made in the design of any artificial whisker actuators,which will impose certain restrictions on the whisker-object interaction. In this paperwe present three robotic whisker platforms, each with different mechanical whiskerproperties and actuation mechanisms. A feature-based classifier is used to simultaneouslydiscriminate radial distance to contact and contact speed for the first time. We showthat whisker-object contact speed predictably affects deflection magnitudes, invariantof whisker material or whisker movement trajectory. We propose that rodent whiskercontrol allows the animal to improve sensing accuracy by regulating contact speed inducedtouch-to-touch variability

Evolution of the largest mammalian genome

The genome of the red vizcacha rat (Rodentia, Octodontidae, Tympanoctomys barrerae) is the largest of all mammals, and about double the size of their close relative, the mountain vizcacha rat Octomys mimax, even though the lineages that gave rise to these species diverged from each other only about five million years ago. The mechanism for this rapid genome expansion is controversial, and hypothesized to be a consequence of whole genome duplication or accumulation of repetitive elements. To test these alternative but nonexclusive hypotheses, we gathered and evaluated evidence from whole transcriptome and whole genome sequences of T. barrerae and O. mimax. We recovered support for genome expansion due to accumulation of a diverse assemblage of repetitive elements, which represent about one half and one fifth of the genomes of T. barrarae and O. mimax, respectively, but we found no strong signal of whole genome duplication. In both species, repetitive sequences were rare in transcribed regions as compared to the rest of the genome, and mostly had no close match to annotated repetitive sequences from other rodents. These findings raise new questions about the genomic dynamics of these repetitive elements, their connection to widespread chromosomal fissions that occurred in the T. barrerae ancestor, and their fitness effects ? including during the evolution of hypersaline dietary tolerance in T. barrerae.Fil: Evans, Ben J.. Mc Master University; CanadáFil: Upham, Nathan S.. Mc Master University; Canadá. Field Museum of Natural History; Estados Unidos. University of Yale; Estados UnidosFil: Golding, G. Brian. Mc Master University; CanadáFil: Ojeda, Ricardo Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Provincia de Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Universidad Nacional de Cuyo. Instituto Argentino de Investigaciones de las Zonas Áridas; ArgentinaFil: Ojeda, Agustina Alejandra. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Provincia de Mendoza. Instituto Argentino de Investigaciones de las Zonas Áridas. Universidad Nacional de Cuyo. Instituto Argentino de Investigaciones de las Zonas Áridas; Argentin

Some Evidence for an Association Between Early Life Adversity and Decision Urgency

The relationship between early life adversity and adult outcomes is traditionally investigated relative to risk and protective factors (e.g., resilience, cognitive appraisal), and poor self-control or decision-making. However, life history theory suggests this relationship may be adaptive—underpinned by mechanisms that use early environmental cues to alter the developmental trajectory toward more short-term strategies. These short-term strategies have some theoretical overlap with the most common process models of decision-making—evidence accumulation models—which model decision urgency as a decision threshold. The current study examined the relationship between decision urgency (through the linear ballistic accumulator) and early life adversity. A mixture of analysis methods, including a joint model analysis designed to explicitly account for uncertainty in estimated decision urgency values, revealed weak-to-strong evidence in favor of a relationship between decision urgency and early life adversity, suggesting a possible effect of life history strategy on even the most basic decisions

Optimal decision-making in mammals : insights from a robot study of rodent texture discrimination

Texture perception is studied here in a physical model of the rat whisker system consisting of a robot equipped with a biomimetic vibrissal sensor. Investigations of whisker motion in rodents have led to several explanations for texture discrimination, such as resonance or stick-slips. Meanwhile, electrophysiological studies of decision-making in monkeys have suggested a neural mechanism of evidence accumulation to threshold for competing percepts, described by a probabilistic model of Bayesian sequential analysis. For our robot whisker data, we find that variable reaction-time decision-making with sequential analysis performs better than the fixed response-time maximum-likelihood estimation. These probabilistic classifiers also use whatever available features of the whisker signals aid the discrimination, giving improved performance over a single-feature strategy, such as matching the peak power spectra of whisker vibrations. These results cast new light on how the various proposals for texture discrimination in rodents depend on the whisker contact mechanics and suggest the possibility of a common account of decision-making across mammalian species

Hobson’s choice? Constraints on accessing spaces of creative production

Successful creative production is often documented to occur in urban areas that are more likely to be diverse, a source of human capital and the site of dense interactions. These accounts chart how, historically, creative industries have clustered in areas where space was once cheap in the city centre fringe and inner city areas, often leading to the development of a creative milieu, and thereby stimulating further creative production. Historical accounts of the development of creative areas demonstrate the crucial role of accessible low-cost business premises. This article reports on the findings of a case study that investigated the location decisions of firms in selected creative industry sectors in Greater Manchester. The study found that, while creative activity remains highly concentrated in the city centre, creative space there is being squeezed and some creative production is decentralizing in order to access cheaper premises. The article argues that the location choices of creative industry firms are being constrained by the extensive city centre regeneration, with the most vulnerable firms, notably the smallest and youngest, facing a Hobson’s choice of being able to access low-cost premises only in the periphery. This disrupts the delicate balance needed to sustain production and begs the broader question as to how the creative economy fits into the existing urban fabric, alongside the competing demands placed on space within a transforming industrial conurbation

Forming reproducible non-lithographic nanocontacts to assess the effect of contact compressive strain in nanomaterials

The application of electrical nanoprobes to measure and characterize nanomaterials has become widely spread. However, the formation of quality electrical contacts using metallic probes on nanostructures has not been directly assessed. We investigate here the electrical behaviour of non-lithographically formed contacts to ZnO nanowires (NWs) and develop a method to reproducibly form Ohmic contacts for accurate electrical measurement of the nanostructures. The contacting method used in this work relies on an electrical feedback mechanism to determine the point of contact to the individual NWs, ensuring minimal compressive strain at the contact. This developed method is compared with the standard tip deflection contacting technique and shows a significant improvement in reproducibility. The effect of excessive compressive strain at the contact was investigated, with a change from rectifying to ohmic I–V behaviour observed as compressive strain at the contact was increased, leading to irreversible changes to the electrical properties of the NW. This work provides an ideal method for forming reproducible non-lithographic nanocontacts to a multitude of nanomaterials