Assessing the role of nuclear effects in the interpretation of the MiniBooNE low-energy anomaly

We study the impact of the effect of multinucleon interactions in the reconstruction of the neutrino energy on the fit of the MiniBooNE data in terms of neutrino oscillations. We obtain some improvement of the fit of the MiniBooNE low-energy excess in the framework of two-neutrino oscillations and a shift of the allowed region in the $\sin^2 2\vartheta$--$\Delta{m}^2$ plane towards smaller values of $\sin^2 2\vartheta$ and larger values of $\Delta{m}^2$. However this effect is not enough to solve the problem of the appearance-disappearance tension in the global fit of short-baseline neutrino oscillation data.Comment: 14 pages; to be published in PR

On the extent and role of the small proteome in the parasitic eukaryote Trypanosoma brucei

Background: Although technical advances in genomics and proteomics research have yielded a better understanding of the coding capacity of a genome, one major challenge remaining is the identification of all expressed proteins, especially those less than 100 amino acids in length. Such information can be particularly relevant to human pathogens, such as Trypanosoma brucei, the causative agent of African trypanosomiasis, since it will provide further insight into the parasite biology and life cycle. Results: Starting with 993 T. brucei transcripts, previously shown by RNA-Sequencing not to coincide with annotated coding sequences (CDS), homology searches revealed that 173 predicted short open reading frames in these transcripts are conserved across kinetoplastids with 13 also conserved in representative eukaryotes. Mining mass spectrometry data sets revealed 42 transcripts encoding at least one matching peptide. RNAi-induced down-regulation of these 42 transcripts revealed seven to be essential in insect-form trypanosomes with two also required for the bloodstream life cycle stage. To validate the specificity of the RNAi results, each lethal phenotype was rescued by co-expressing an RNAi-resistant construct of each corresponding CDS. These previously non-annotated essential small proteins localized to a variety of cell compartments, including the cell surface, mitochondria, nucleus and cytoplasm, inferring the diverse biological roles they are likely to play in T. brucei. We also provide evidence that one of these small proteins is required for replicating the kinetoplast (mitochondrial) DNA. Conclusions: Our studies highlight the presence and significance of small proteins in a protist and expose potential new targets to block the survival of trypanosomes in the insect vector and/or the mammalian host

Quark Condensate in the Deuteron

We study the changes produced by the deuteron on the QCD quark condensate by means the Feynman-Hellmann theorem and find that the pion mass dependence of the pion-nucleon coupling could play an important role. We also discuss the relation between the many body effect of the condensate and the meson exchange currents, as seen by photons and pions. For pion probes, the many-body term in the physical amplitude differs significantly from that of soft pions, the one linked to the condensate. Thus no information about the many-body term of the condensate can be extracted from the pion-deuteron scattering length. On the other hand, in the Compton amplitude, the relationship with the condensate is a more direct one.Comment: to appear in Physics Review C (19 pages, 3 figures

Unusual statistics of interference effects in neutron scattering from compound nuclei

We consider interference effects between p-wave resonance scattering amplitude and background s-wave amplitude in low-energy neutron scattering from a heavy nucleus which goes through the compound nucleus stage. The first effect is in the difference between the forward and backward scattering cross sections. Because of the chaotic nature of the compound states, this effect is a random variable with zero mean. However, a statistical consideration shows that the probability distribution of this effect does not obey the standard central limit theorem. That is, the probability density for the effect averaged over n resonances does not become a Gaussian distribution with the variance decreasing as 1/sqrt(n) (``violation'' of the theorem!). We derive the probability distribution of the effect and the limit distribution of the average. It is found that the width of this distribution does not decrease with the increase of n, i.e., fluctuations are not suppressed by averaging. Furthermore, we consider the correlation between the neutron spin and the scattering plane and find that this effect, although much smaller, shows fluctuations which actually increase upon averaging over many measurements. Limits of the effects due to finite resonance widths are also considered. In the appendix we present a simple derivation of the limit theorem for the average of random variables with infinite variances.Comment: 15 pages, RevTeX, submitted to Phys. Rev.

Influence of the pion-nucleon interaction on the collective pion flow in heavy ion reactions

We investigate the influence of the real part of the in-medium pion optical potential on the pion dynamics in intermediate energy heavy ion reactions at 1 GeV/A. For different models, i.e. a phenomenological model and the $\Delta$--hole model, a pionic potential is extracted from the dispersion relation and used in Quantum Molecular Dynamics calculations. In addition with the inelastic scattering processes we thus take care of both, real and imaginary part of the pion optical potential. A strong influence of the real pionic potential on the pion in-plane flow is observed. In general such a potential has the tendency to reduce the anticorrelation of pion and nucleon flow in non-central collisions.Comment: 12 pages Latex, 4 PS-figure

Charged Current Neutrino Nucleus Interactions at Intermediate Energies

We have developed a model to describe the interactions of neutrinos with nucleons and nuclei, focusing on the region of the quasielastic and Delta(1232) peaks. We describe neutrino nucleon collisions with a fully relativistic formalism which incorporates state-of-the-art parametrizations of the form factors for both the nucleon and the N-Delta transition. The model has then been extended to finite nuclei, taking into account nuclear effects such as Fermi motion, Pauli blocking (both within the local density approximation), nuclear binding and final state interactions. The in-medium modification of the Delta resonance due to Pauli blocking and collisional broadening have also been included. Final state interactions are implemented by means of the Boltzmann-Uehling-Uhlenbeck (BUU) coupled-channel transport model. Results for charged current inclusive cross sections and exclusive channels as pion production and nucleon knockout are presented and discussed.Comment: 26 pages, 24 figures; v2: 2 figures and discussion added, version accepted for publication in Phys. Rev.

N-Delta(1232) axial form factors from weak pion production

The N-Delta axial form factors are determined from neutrino induced pion production ANL & BNL data by using a state of the art theoretical model, which accounts both for background mechanisms and deuteron effects. We find violations of the off diagonal Goldberger-Treiman relation at the level of 2 sigma which might have an impact in background calculations for T2K and MiniBooNE low energy neutrino oscillation precision experiments.Comment: 4 pages, 1 figur

Exploring the nuclear pion dispersion relation through the anomalous coupling of photon to photon and neutral pion

We investigate the possibility of measuring the pion dispersion relation in nuclear matter through the anomalous coupling in the reaction \gamma - \gamma' \pi_0. It is shown that this reaction permits the study of pionic modes for space-like momenta. If the pion is softened in nuclear matter due to mixing with the delta-hole state, significant strength for this reaction is expected to move into the space-like region. Competing background processes are evaluated, and it is concluded that useful insight can be obtained experimentally, but only through a difficult exclusive measurement