Genome-wide screen identifies host colonization determinants in a bacterial gut symbiont.

Animal guts are often colonized by host-specialized bacterial species to the exclusion of other transient microorganisms, but the genetic basis of colonization ability is largely unknown. The bacterium Snodgrassella alvi is a dominant gut symbiont in honey bees, specialized in colonizing the hindgut epithelium. We developed methods for transposon-based mutagenesis in S. alvi and, using high-throughput DNA sequencing, screened genome-wide transposon insertion (Tn-seq) and transcriptome (RNA-seq) libraries to characterize both the essential genome and the genes facilitating host colonization. Comparison of Tn-seq results from laboratory cultures and from monoinoculated worker bees reveal that 519 of 2,226 protein-coding genes in S. alvi are essential in culture, whereas 399 are not essential but are beneficial for gut colonization. Genes facilitating colonization fall into three broad functional categories: extracellular interactions, metabolism, and stress responses. Extracellular components with strong fitness benefits in vivo include trimeric autotransporter adhesins, O antigens, and type IV pili (T4P). Experiments with T4P mutants establish that T4P in S. alvi likely function in attachment and biofilm formation, with knockouts experiencing a competitive disadvantage in vivo. Metabolic processes promoting colonization include essential amino acid biosynthesis and iron acquisition pathways, implying nutrient scarcity within the hindgut environment. Mechanisms to deal with various stressors, such as for the repair of double-stranded DNA breaks and protein quality control, are also critical in vivo. This genome-wide study identifies numerous genetic networks underlying colonization by a gut commensal in its native host environment, including some known from more targeted studies in other host-microbe symbioses

Effective Lagrangians and Parity-Conserving Time-Reversal Violation at Low Energies

Using effective Lagrangians, we argue that any time-reversal-violating but parity-conserving effects are too small to be observed in flavor-conserving nuclear processes without dramatic improvement in experimental accuracy. In the process we discuss other arguments that have appeared in the literature.Comment: Revised manuscript, 11 pages, RevTex, epsf.st

The Nature of the Hall Insulator

We have conducted an experimental study of the linear transport properties of the magnetic-field induced insulating phase which terminates the quantum Hall (QH) series in two dimensional electron systems. We found that a direct and simple relation exists between measurements of the longitudinal resistivity, $\rho_{xx}$, in this insulating phase and in the neighboring QH phase. In addition, we find that the Hall resistivity, $\rho_{xy}$, can be quantized in the insulating phase. Our results indicate that a close relation exists between the conduction mechanism in the insulator and in the QH liquid.Comment: RevTeX, 4 pages, 4 figure

Ultrafast extrinsic spin-Hall currents

We consider the possibility of ultrafast extrinsic spin-Hall currents, generated by skew scattering following the optical injection of charge or pure spin currents. We propose a phenomenological model for this effect in quantum well structures. An injected charge current leads to a spin-Hall-induced pure spin current, and an injected pure spin current leads to a spin-Hall-induced charge current. The resulting spin or charge accumulation can be measured optically.Comment: 18 pages, 3 figure

A Farewell to Liouvillians

We examine the Liouvillian approach to the quantum Hall plateau transition, as introduced recently by Sinova, Meden, and Girvin [Phys. Rev. B {\bf 62}, 2008 (2000)] and developed by Moore, Sinova and Zee [Phys. Rev. Lett. {\bf 87}, 046801 (2001)]. We show that, despite appearances to the contrary, the Liouvillian approach is not specific to the quantum mechanics of particles moving in a single Landau level: we formulate it for a general disordered single-particle Hamiltonian. We next examine the relationship between Liouvillian perturbation theory and conventional calculations of disorder-averaged products of Green functions and show that each term in Liouvillian perturbation theory corresponds to a specific contribution to the two-particle Green function. As a consequence, any Liouvillian approximation scheme may be re-expressed in the language of Green functions. We illustrate these ideas by applying Liouvillian methods, including their extension to $N_L > 1$ Liouvillian flavors, to random matrix ensembles, using numerical calculations for small integer $N_L$ and an analytic analysis for large $N_L$. We find that behavior at $N_L > 1$ is different in qualitative ways from that at $N_L=1$. In particular, the $N_L = \infty$ limit expressed using Green functions generates a pathological approximation, in which two-particle correlation functions fail to factorize correctly at large separations of their energy, and exhibit spurious singularities inside the band of random matrix energy levels. We also consider the large $N_L$ treatment of the quantum Hall plateau transition, showing that the same undesirable features are present there, too

Axion quasiparticles for axion dark matter detection

It has been suggested that certain antiferromagnetic topological insulators contain axion quasiparticles (AQs), and that such materials could be used to detect axion dark matter (DM). The AQ is a longitudinal antiferromagnetic spin fluctuation coupled to the electromagnetic Chern-Simons term, which, in the presence of an applied magnetic field, leads to mass mixing between the AQ and the electric field. The electromagnetic boundary conditions and transmission and reflection coefficients are computed. A model for including losses into this system is presented, and the resulting linewidth is computed. It is shown how transmission spectroscopy can be used to measure the resonant frequencies and damping coefficients of the material, and demonstrate conclusively the existence of the AQ. The dispersion relation and boundary conditions permit resonant conversion of axion DM into THz photons in a material volume that is independent of the resonant frequency, which is tuneable via an applied magnetic field. A parameter study for axion DM detection is performed, computing boost amplitudes and bandwidths using realistic material properties including loss. The proposal could allow for detection of axion DM in the mass range between 1 and 10 meV using current and near future technology

Childbirth after adolescent and young adult cancer: a population-based study

Purpose: Annually, > 45,000 US women are diagnosed with cancer during adolescence and young adulthood (AYA). Since 2006, national guidelines have recommended fertility counseling for cancer patients. We examined childbirth after AYA cancer by calendar period, cancer diagnosis, and maternal characteristics. Methods: We identified a cohort of women with an incident invasive AYA cancer diagnosis at ages 15–39 during 2000–2013 in North Carolina. Cancer records were linked with statewide birth certificates through 2014. Hazard ratios (HR) and 95% confidence intervals (CI) for first post-diagnosis live birth were calculated using Cox proportional hazards regression. Results: Among 17,564 AYA cancer survivors, 1989 had ≥ 1 birth after diagnosis during 98,397 person-years. The 5- and 10-year cumulative incidence of live birth after cancer was 10 and 15%, respectively. AYA survivors with a post-diagnosis birth were younger at diagnosis, had lower stage disease, and had less often received chemotherapy than those without a birth. The 5-year cumulative incidence of post-diagnosis birth was 10.0% for women diagnosed during 2007–2012, compared to 9.4% during 2000–2005 (HR = 1.01; 0.91, 1.12), corresponding to periods before and after publication of American Society of Clinical Oncology fertility counseling guidelines in 2006. Conclusions: Despite advances in fertility preservation options and recognition of fertility counseling as a part of high-quality cancer care, the incidence of post-diagnosis childbirth has remained stable over the last 15 years. Implications for Cancer Survivors: Our study uses statewide data to provide recent, population-based estimates of how often AYA women have biological children after a cancer diagnosis

Birth outcomes among adolescent and young adult cancer survivors

IMPORTANCE: Cancer diagnosis and treatment may adversely affect reproductive outcomes among female cancer survivors. OBJECTIVE: To compare the birth outcomes of adolescent and young adult cancer survivors (AYA [diagnosed at ages 15-39 years]) with those of women without a cancer diagnosis. DESIGN, SETTING, AND PARTICIPANTS: The North Carolina Central Cancer Registry (CCR) was used to identify female AYA cancer survivors diagnosed from January 2000 to December 2013; CCR records were linked to statewide birth certificate files from January 2000 to December 2014 to identify postdiagnosis live births to AYA survivors (n = 2598). A comparison cohort of births to women without a recorded cancer diagnosis was randomly selected from birth certificate files (n = 12 990) with frequency matching on maternal age and year of delivery. MAIN OUTCOMES AND MEASURES: Prevalence of preterm birth, low birth weight, small-for-gestational-age births, cesarean delivery, and low Apgar score. RESULTS: Overall, 2598 births to AYA cancer survivors (mean [SD] maternal age, 31 [5] years) were included. Births to AYA cancer survivors had a significantly increased prevalence of preterm birth (prevalence ratio [PR], 1.52; 95% CI, 1.34-1.71), low birth weight (PR, 1.59; 95% CI, 1.38-1.83), and cesarean delivery (PR, 1.08; 95% CI, 1.01-1.14) relative to the comparison cohort of 1299. The higher prevalence of these outcomes was most concentrated among births to women diagnosed during pregnancy. Other factors associated with preterm birth and low birth weight included treatment with chemotherapy and a diagnosis of breast cancer, non-Hodgkin lymphoma, or gynecologic cancers. The prevalence of small-for-gestational-age births and low Apgar score (<7) did not differ significantly between groups. CONCLUSIONS AND RELEVANCE: Live births to AYA cancer survivors may have an increased risk of preterm birth and low birth weight, suggesting that additional surveillance of pregnancies in this population is warranted. Our findings may inform the reproductive counseling of female AYA cancer survivors

Pulsed Magnetic Field Measurements of the Composite Fermion Effective Mass

Magnetotransport measurements of Composite Fermions (CF) are reported in 50 T pulsed magnetic fields. The CF effective mass is found to increase approximately linearly with the effective field $B^*$, in agreement with our earlier work at lower fields. For a $B^*$ of 14 T it reaches $1.6m_e$, over 20 times the band edge electron mass. Data from all fractions are unified by the single parameter $B^*$ for all the samples studied over a wide range of electron densities. The energy gap is found to increase like $\sqrt{B^*}$ at high fields.Comment: Has final table, will LaTeX without error