A Correlation Study between Geometry of Collared Coils and Normal Quadrupole Multipole in the Main LHC Dipoles

The quality control implemented at all LHC dipole assemblers includes precise mechanical measurements of the geometry of collared coils. A cross-analysis performed between mechanical and magnetic measurements data shows a correlation between collared coils outer dimensions and the normal quadrupole multipole (b2) for one dipole assembler. The profile geometry of the single collars - as determined from 3D measurements at the collar suppliers and CERN - could not account alone for the significant left â right aperture asymmetry observed. This triggered a deeper investigation on different elements of the geometry of single collars. The results of this work show that the relative positioning of the collaring holes, allowing a small bending deformation of collars under the effect of coil pre-stress, is an important effect that generates a b2 multipole at the limit of specification. The study has deepened the understanding of the factors affecting collared coil geometry and field quality. The precision of 3D measurements at the collar suppliers and at CERN has been improved, and a tighter quality control has been introduced at the collar suppliers

Genetically engineered minipigs model the major clinical features of human neurofibromatosis type 1.

Neurofibromatosis Type 1 (NF1) is a genetic disease caused by mutations in Neurofibromin 1 (NF1). NF1 patients present with a variety of clinical manifestations and are predisposed to cancer development. Many NF1 animal models have been developed, yet none display the spectrum of disease seen in patients and the translational impact of these models has been limited. We describe a minipig model that exhibits clinical hallmarks of NF1, including café au lait macules, neurofibromas, and optic pathway glioma. Spontaneous loss of heterozygosity is observed in this model, a phenomenon also described in NF1 patients. Oral administration of a mitogen-activated protein kinase/extracellular signal-regulated kinase inhibitor suppresses Ras signaling. To our knowledge, this model provides an unprecedented opportunity to study the complex biology and natural history of NF1 and could prove indispensable for development of imaging methods, biomarkers, and evaluation of safety and efficacy of NF1-targeted therapies

Integrin activation - the importance of a positive feedback

Integrins mediate cell adhesion and are essential receptors for the development and functioning of multicellular organisms. Integrin activation is known to require both ligand and talin binding and to correlate with cluster formation but the activation mechanism and precise roles of these processes are not yet resolved. Here mathematical modeling, with known experimental parameters, is used to show that the binding of a stabilizing factor, such as talin, is alone insufficient to enable ligand-dependent integrin activation for all observed conditions; an additional positive feedback is required.Comment: in press in Bulletin of Mathematical Biolog

Equivalent widths of Lyman α\alpha emitters in MUSE-Wide and MUSE-Deep

The aim of this study is to better understand the connection between the Lyman $\alpha$ rest-frame equivalent width (EW$_0$) and spectral properties as well as ultraviolet (UV) continuum morphology by obtaining reliable EW$_0$ histograms for a statistical sample of galaxies and by assessing the fraction of objects with large equivalent widths. We used integral field spectroscopy from MUSE combined with broad-band data from the Hubble Space Telescope (HST) to measure EW$_0$. We analysed the emission lines of $1920$ Lyman $\alpha$ emitters (LAEs) detected in the full MUSE-Wide (one hour exposure time) and MUSE-Deep (ten hour exposure time) surveys and found UV continuum counterparts in archival HST data. We fitted the UV continuum photometric images using the Galfit software to gain morphological information on the rest-UV emission and fitted the spectra obtained from MUSE to determine the double peak fraction, asymmetry, full-width at half maximum, and flux of the Lyman $\alpha$ line. The two surveys show different histograms of Lyman $\alpha$ EW$_0$. In MUSE-Wide, $20\%$ of objects have EW$_0 > 240$ \r{A}, while this fraction is only $11\%$ in MUSE-Deep and $\approx 16\%$ for the full sample. This includes objects without HST continuum counterparts (one-third of our sample), for which we give lower limits for EW$_0$. The object with the highest securely measured EW$_0$ has EW$_0=589 \pm 193$ \r{A} (the highest lower limit being EW$_0=4464$ \r{A}). We investigate the connection between EW$_0$ and Lyman $\alpha$ spectral or UV continuum morphological properties. The survey depth has to be taken into account when studying EW$_0$ distributions. We find that in general, high EW$_0$ objects can have a wide range of spectral and UV morphological properties, which might reflect that the underlying causes for high EW$_0$ values are equally varied. (abridged)Comment: 28 pages, 21 + 1 figures, 7 + 1 tables, accepted for publication in A&

The Lensed Lyman-Alpha MUSE Arcs Sample (LLAMAS): I. Characterisation of extended Lyman-alpha halos and spatial offsets

Aims. We present the Lensed Lyman-Alpha MUSE Arcs Sample (LLAMAS) selected from MUSE and HST observations of 17 lensing clusters. The sample consists of 603 continuum-faint (23 < MUV<-14) lensed Lyman-α emitters (producing 959 images) with secure spectroscopic redshifts between 2.9 and 6.7. Combining the power of cluster magnification with 3D spectroscopic observations, we were able to reveal the resolved morphological properties of 268 Lyman-α emitters. Methods. We used a forward-modeling approach to model both Lyman-α and rest-frame UV continuum emission profiles in the source plane and measure spatial extent, ellipticity, and spatial offsets between UV and Lyman-α emission. Results. We find a significant correlation between UV continuum and Lyman-α spatial extent. Our characterization of the Lyman-α halos indicates that the halo size is linked to the physical properties of the host galaxy (SFR, Lyman-α equivalent width, Lyman-α line FWHM). We find that 48% of Lyman-α halos are best fit by an elliptical emission distribution with a median axis ratio of q =0.48. We observe that 60% of galaxies detected both in UV and Lyman-α emission show a significant spatial offset (ΔLyα-UV). We measure a median offset of ΔLyα-UV=0.58± 0.14 kpc for the entire sample. By comparing the spatial offset values with the size of the UV component, we show that 40% of the offsets could be due to star-forming sub-structures in the UV component, while the larger offsets (60%) are more likely due to greater-distance processes such as scattering effects inside the circumgalactic medium or emission from faint satellites or merging galaxies. Comparisons with a zoom-in radiative hydrodynamics simulation of a typical Lyman-α emitting galaxy show a very good agreement with LLAMAS galaxies and indicate that bright star-formation clumps and satellite galaxies could produce a similar spatial offset distribution

The Lensed Lyman-Alpha MUSE Arcs Sample (LLAMAS)

Aims. We present the Lensed Lyman-Alpha MUSE Arcs Sample (LLAMAS) selected from MUSE and HST observations of 17 lensing clusters. The sample consists of 603 continuum-faint (−23 < MUV < −14) lensed Lyman-α emitters (producing 959 images) with secure spectroscopic redshifts between 2.9 and 6.7. Combining the power of cluster magnification with 3D spectroscopic observations, we were able to reveal the resolved morphological properties of 268 Lyman-α emitters. Methods. We used a forward-modeling approach to model both Lyman-α and rest-frame UV continuum emission profiles in the source plane and measure spatial extent, ellipticity, and spatial offsets between UV and Lyman-α emission. Results. We find a significant correlation between UV continuum and Lyman-α spatial extent. Our characterization of the Lyman-α halos indicates that the halo size is linked to the physical properties of the host galaxy (SFR, Lyman-α equivalent width, Lyman-α line FWHM). We find that 48% of Lyman-α halos are best fit by an elliptical emission distribution with a median axis ratio of q = 0.48. We observe that 60% of galaxies detected both in UV and Lyman-α emission show a significant spatial offset (ΔLyα − UV). We measure a median offset of ΔLyα − UV = 0.58 ± 0.14 kpc for the entire sample. By comparing the spatial offset values with the size of the UV component, we show that 40% of the offsets could be due to star-forming sub-structures in the UV component, while the larger offsets (60%) are more likely due to greater-distance processes such as scattering effects inside the circumgalactic medium or emission from faint satellites or merging galaxies. Comparisons with a zoom-in radiative hydrodynamics simulation of a typical Lyman-α emitting galaxy show a very good agreement with LLAMAS galaxies and indicate that bright star-formation clumps and satellite galaxies could produce a similar spatial offset distribution

Derepression of the Plant Chromovirus LORE1 Induces Germline Transposition in Regenerated Plants

Transposable elements represent a large proportion of the eukaryotic genomes. Long Terminal Repeat (LTR) retrotransposons are very abundant and constitute the predominant family of transposable elements in plants. Recent studies have identified chromoviruses to be a widely distributed lineage of Gypsy elements. These elements contain chromodomains in their integrases, which suggests a preference for insertion into heterochromatin. In turn, this preference might have contributed to the patterning of heterochromatin observed in host genomes. Despite their potential importance for our understanding of plant genome dynamics and evolution, the regulatory mechanisms governing the behavior of chromoviruses and their activities remain largely uncharacterized. Here, we report a detailed analysis of the spatio-temporal activity of a plant chromovirus in the endogenous host. We examined LORE1a, a member of the endogenous chromovirus LORE1 family from the model legume Lotus japonicus. We found that this chromovirus is stochastically de-repressed in plant populations regenerated from de-differentiated cells and that LORE1a transposes in the male germline. Bisulfite sequencing of the 5′ LTR and its surrounding region suggests that tissue culture induces a loss of epigenetic silencing of LORE1a. Since LTR promoter activity is pollen specific, as shown by the analysis of transgenic plants containing an LTR::GUS fusion, we conclude that male germline-specific LORE1a transposition in pollen grains is controlled transcriptionally by its own cis-elements. New insertion sites of LORE1a copies were frequently found in genic regions and show no strong insertional preferences. These distinctive novel features of LORE1 indicate that this chromovirus has considerable potential for generating genetic and epigenetic diversity in the host plant population. Our results also define conditions for the use of LORE1a as a genetic tool