Nuclear contamination sources in surface air of Finnish Lapland in 1965–2011 studied by means of 137Cs, 90Sr, and total beta activity

Radionuclides 137Cs and 90Sr and total beta activity were determined from air filters collected in Rovaniemi (Finnish Lapland) in1965–2011. Nuclear contamination sources present in the air filter samples as well as temporal changes in radionuclide concentrations were examined. Ozone observations and meteorological modeling were used in combination with radionuclide analyses to study the reasons behind the observed seasonal concentration variation. In general, the magnitude and variation in activity concentrations of 137Cs and 90Sr and total beta activity in the surface air of Rovaniemi in 1965–2011 corresponded well with values from other countries. However, the obtained results prove in practice that hardly any refractory or intermediate radionuclides from the destroyed Chernobyl reactor fuel were introduced to Finnish Lapland. The main source of 137Cs and 90Sr and total beta activity in the surface air of Rovaniemi in 1965–2011 has been intense atmospheric nuclear weapon testing in 1950s–1960s and later tests performed in 1965–1980, as well as leakages from underground nuclear tests in Semipalatinsk, 1966, and Novaya Zemlya, 1987. For 137Cs and total beta activity, the influence of Chernobyl and Fukushima accidents was detected.Peer reviewe

Detection of intermediates and kinetic control during assembly of bacteriophage P22 procapsid

Bacteriophage P22 serves as a model for the assembly and maturation of other icosahedral double-stranded DNA viruses. P22 coat and scaffolding proteins assemble in vitro into an icosahedral procapsid, which then expands during DNA packaging (maturation). Efficient in vitro assembly makes this system suitable for design and production of monodisperse spherical nanoparticles (diameter ≈50 nm). In this work we explore the possibility of controlling the outcome of assembly by scaffolding protein engineering. The scaffolding protein exists in monomer-dimer-tetramer equilibrium. We address the role of monomers and dimers in assembly by using three different scaffolding proteins with altered monomer-dimer equilibrium (weak dimer, covalent dimer, monomer). The progress and outcome of assembly was monitored by time-resolved X-ray scattering which allowed us to distinguish between closed shells and incomplete assembly intermediates. Binding of scaffolding monomer activates the coat protein for assembly. Excess dimeric scaffolding protein resulted in rapid nucleation and kinetic trapping yielding incomplete shells. Addition of monomeric wild type scaffold with excess coat protein completed these metastable shells. Thus, the monomeric scaffolding protein plays an essential role in the elongation phase by activating the coat and effectively lowering its critical concentration for assembly

Ion production rate in a boreal forest based on ion, particle and radiation measurements

International audienceIn this study the ion production rates in a boreal forest were studied based on two different methods: 1) cluster ion and particle concentration measurements, 2) external radiation and radon concentration measurements. Both methods produced reasonable estimates for ion production rates. The average ion production rate calculated from aerosol particle size distribution and air ion mobility distribution measurements was 2.6 ion pairs cm-3s-1, and based on external radiation and radon measurements, 4.5 ion pairs cm-3s-1. The first method based on ion and particle measurements gave lower values for the ion production rates especially during the day. A possible reason for this is that particle measurements started only from 3nm, so the sink of small ions during the nucleation events was underestimated. It may also be possible that the hygroscopic growth factors of aerosol particles were underestimated. Another reason for the discrepancy is the nucleation mechanism itself. If the ions are somehow present in the nucleation process, there could have been an additional ion sink during the nucleation days

Responses of the atmospheric concentration of radon-222 to the vertical mixing and spatial transportation

Radon-222 (Rn-222) has traditionally been used as an atmospheric tracer for studying air masses and planetary boundary-layer evolution. However, there are various factors that influence its atmospheric concentration. Therefore, we investigated the variability of the atmospheric radon concentration in response to the vertical air mixing and spatial transport in a boreal forest environment in northern Europe. Long-term Rn-222 data collected at the SMEAR II station in southern Finland during 2000-2006 were analysed along with meteorological data, mixing layer height retrievals and air-mass back trajectory information. The daily mean atmospheric radon concentration followed a log-normal distribution within the range <0.1-11 Bq m(-3), with the geometric mean of 2.5 Bq m(-3) and a geometric standard deviation of 1.7 Bq m(3). In spring, summer, autumn and winter, the daily mean concentrations were 1.7, 2.7, 2.8 and 2.7 Bq m(-3), respectively. The low, spring radon concentration was especially attributed to the joint effect of enhanced vertical mixing due to the increasing solar irradiance and inhibited local emissions due to snow thawing. The lowest atmospheric radon concentration was observed with northwesterly winds and high radon concentrations with southeasterly winds, which were associated with the marine and continental origins of air masses, respectively. The atmospheric radon concentration was in general inversely proportional to the mixing layer height. However, the ambient temperature and small-scale turbulent mixing were observed to disturb this relationship. The evolution of turbulence within the mixing layer was expected to be a key explanation for the delay in the response of the atmospheric radon concentration to the changes in the mixing layer thickness. Radon is a valuable naturally-occurring tracer for studying boundary layer mixing processes and transport patterns, especially when the mixing layer is fully developed. However, complementing information, provided by understanding the variability of the atmospheric radon concentration, is of high necessity to be taken into consideration for realistically interpreting the evolution of air masses or planetary boundary layer.Peer reviewe

ErbB4 tyrosine kinase inhibition impairs neuromuscular development in zebrafish embryos

Tyrosine kinase inhibitors are widely used in the clinic, but limited information is available about their toxicity in developing organisms. Here, we tested the effect of tyrosine kinase inhibitors targeting the ErbB receptors for their effects on developing zebrafish ( Danio rerio) embryos. Embryos treated with wide-spectrum pan-ErbB inhibitors or erbb4a-targeting antisense oligonucleotides demonstrated reduced locomotion, reduced diameter of skeletal muscle fibers, reduced expression of muscle-specific genes, as well as reduced motoneuron length. The phenotypes in the skeletal muscle, as well as the defect in the motility, were rescued both by microinjection of human ERBB4 mRNA, and by transposon-mediated muscle-specific ERBB4 overexpression. The role of ErbB4 in regulating motility was further controlled by targeted mutation of the endogenous erbb4a locus in the zebrafish genome by CRISPR/Cas9. These observations demonstrate a potential for the ErbB tyrosine kinase inhibitors to induce neuromuscular toxicity in a developing organism via a mechanism involving inhibition of ErbB4 function.

Hypoxia-inducible Factor-1α Induces ErbB4 Signaling in the Differentiating Mammary Gland

Conditional knock-out of Hif1a in the mouse mammary gland impairs lobuloalveolar differentiation during lactation. Here, we demonstrate that expression of ErbB4 was reduced in the lobulalveoli of mice with mammary gland-specific deletion of Hif1a. Erbb4 was not, however, a direct target gene for transcriptional regulation by HIF-1 alpha in vitro. HIF-1 alpha overexpression or HIF accumulating prolyl hydroxylase inhibitors reduced ErbB4 endocytosis, promoted transcriptional co-regulatory activity of ErbB4, and stimulated ErbB4-induced differentiation of mammary carcinoma cells. Consistently, RNA interference-mediated down-regulation of HIF-1 alpha resulted in reduced ErbB4 protein amount and reduced mammary carcinoma cell differentiation. These findings indicate that HIF-1 alpha is a physiologically relevant regulator of ErbB4 and that ErbB4 is involved in HIF-regulated differentiation of the mammary gland.</p

Using NMF for analyzing war logs

We investigate a semi-automated identification of technical problems occurred by armed forces weapon systems during mission of war. The proposed methodology is based on a semantic analysis of textual information in reports from soldiers (war logs). Latent semantic indexing (LSI) with non-negative matrix factorization (NMF) as technique from multivariate analysis and linear algebra is used to extract hidden semantic textual patterns from the reports. NMF factorizes the term-by-war log matrix - that consists of weighted term frequencies into two non-negative matrices. This enables natural parts-based representation of the report information and it leads to an easy evaluation by human experts because human brain also uses parts-based representation. For an improved research and technology planning, the identified technical problems are a valuable source of information. A case study extracts technical problems from military logs of the Afghanistan war. Results are compared to a manual analysis written by journalists of 'Der Spiegel'

Coibamide A Targets Sec61 to Prevent Biogenesis of Secretory and Membrane Proteins

Coibamide A (CbA) is a marine natural product with potent antiproliferative activity against human cancer cells and a unique selectivity profile. Despite promising antitumor activity, the mechanism of cytotoxicity and specific cellular target of CbA remain unknown. Here, we develop an optimized synthetic CbA photoaffinity probe (photo-CbA) and use it to demonstrate that CbA directly targets the Sec61 alpha subunit of the Sec61 protein translocon. CbA binding to Sec61 results in broad substratenonselective inhibition of ER protein import and potent cytotoxicity against specific cancer cell lines. CbA targets a lumenal cavity of Sec61 that is partially shared with known Sec61 inhibitors, yet profiling against resistance conferring Sec61 alpha mutations identified from human HCT116 cells su ests a distinct binding mode for CbA. Specifically, despite conferring strong resistance to all previously known Sec61 inhibitors, the Sec61 alpha mutant R66I remains sensitive to CbA. A further unbiased screen for Sec61 alpha resistance mutations identified the CbA-resistant mutation S71P, which confirms nonidentical binding sites for CbA and apratoxin A and supports the susceptibility of the Sec61 plug region for channel inhibition. Remarkably, CbA, apratoxin A, and ipomoeassin F do not display comparable patterns of potency and selectivity in the NCI60 panel of human cancer cell lines. Our work connecting CbA activity with selective prevention of secretory and membrane protein biogenesis by inhibition of Sec61 opens up possibilities for developing new Sec61 inhibitors with improved druglike properties that are based on the coibamide pharmacophore.Peer reviewe

How do air ions reflect variations in ionising radiation in the lower atmosphere in a boreal forest?

Most of the ion production in the atmosphere is attributed to ionising radiation. In the lower atmosphere, ionising radiation consists mainly of the decay emissions of radon and its progeny, gamma radiation of the terrestrial origin as well as photons and elementary particles of cosmic radiation. These types of radiation produce ion pairs via the ionisation of nitrogen and oxygen as well as trace species in the atmosphere, the rate of which is defined as the ionising capacity. Larger air ions are produced out of the initial charge carriers by processes such as clustering or attachment to preexisting aerosol particles. This study aimed (1) to identify the key factors responsible for the variability in ionising radiation and in the observed air ion concentrations, (2) to reveal the linkage between them and (3) to provide an in-depth analysis into the effects of ionising radiation on air ion formation, based on measurement data collected during 2003-2006 from a boreal forest site in southern Finland. In general, gamma radiation dominated the ion production in the lower atmosphere. Variations in the ionising capacity came from mixing layer dynamics, soil type and moisture content, meteorological conditions, long-distance transportation, snow cover attenuation and precipitation. Slightly similar diurnal patterns to variations in the ionising capacity were observed in air ion concentrations of the cluster size (0.8-1.7 nm in mobility diameters). However, features observed in the 0.81 nm ion concentration were in good connection to variations of the ionising capacity. Further, by carefully constraining perturbing variables, a strong dependency of the cluster ion concentration on the ionising capacity was identified, proving the functionality of ionising radiation in air ion production in the lower atmosphere. This relationship, however, was only clearly observed on new particle formation (NPF) days, possibly indicating that charges after being born underwent different processes on NPF days and non-event days and also that the transformation of newly formed charges to cluster ions occurred in a shorter timescale on NPF days than on non-event days.Peer reviewe