Multi Mode Interferometer for Guided Matter Waves

We describe the fundamental features of an interferometer for guided matter waves based on Y-beam splitters and show that, in a quasi two-dimensional regime, such a device exhibits high contrast fringes even in a multi mode regime and fed from a thermal source.Comment: Final version (accepted to PRL

Wave function recombination instability in cold atom interferometers

Cold atom interferometers use guiding potentials that split the wave function of the Bose-Einstein condensate and then recombine it. We present theoretical analysis of the wave function recombination instability that is due to the weak nonlinearity of the condensate. It is most pronounced when the accumulated phase difference between the arms of the interferometer is close to an odd multiple of PI and consists in exponential amplification of the weak ground state mode by the strong first excited mode. The instability exists for both trapped-atom and beam interferometers.Comment: 4 pages, 5 figure

Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor

Background The availability of multiple avian genome sequence assemblies greatly improves our ability to define overall genome organization and reconstruct evolutionary changes. In birds, this has previously been impeded by a near intractable karyotype and relied almost exclusively on comparative molecular cytogenetics of only the largest chromosomes. Here, novel whole genome sequence information from 21 avian genome sequences (most newly assembled) made available on an interactive browser (Evolution Highway) was analyzed. Results Focusing on the six best-assembled genomes allowed us to assemble a putative karyotype of the dinosaur ancestor for each chromosome. Reconstructing evolutionary events that led to each species' genome organization, we determined that the fastest rate of change occurred in the zebra finch and budgerigar, consistent with rapid speciation events in the Passeriformes and Psittaciformes. Intra- and interchromosomal changes were explained most parsimoniously by a series of inversions and translocations respectively, with breakpoint reuse being commonplace. Analyzing chicken and zebra finch, we found little evidence to support the hypothesis of an association of evolutionary breakpoint regions with recombination hotspots but some evidence to support the hypothesis that microchromosomes largely represent conserved blocks of synteny in the majority of the 21 species analyzed. All but one species showed the expected number of microchromosomal rearrangements predicted by the haploid chromosome count. Ostrich, however, appeared to retain an overall karyotype structure of 2n = 80 despite undergoing a large number (26) of hitherto un-described interchromosomal changes. Conclusions Results suggest that mechanisms exist to preserve a static overall avian karyotype/genomic structure, including the microchromosomes, with widespread interchromosomal change occurring rarely (e.g. in ostrich and budgerigar lineages). Of the species analyzed, the chicken lineage appeared to have undergone the fewest changes compared to the dinosaur ancestor

Optical monitoring of the gravitationally lensed quasar Q2237+0305 from APO between June 1995 and January 1998

We present a data set of images of the gravitationally lensed quasar Q2237+0305, that was obtained at the Apache Point Observatory (APO) between June 1995 and January 1998. Although the images were taken under variable, often poor seeing conditions and with coarse pixel sampling, photometry is possible for the two brighter quasar images A and B with the help of exact quasar image positions from HST observations. We obtain a light curve with 73 data points for each of the images A and B. There is evidence for a long (>~ 100 day) brightness peak in image A in 1996 with an amplitude of about 0.4 to 0.5 mag (relative to 1995), which indicates that microlensing has been taking place in the lensing galaxy. Image B does not vary much over the course of the observation period. The long, smooth variation of the light curve is similar to the results from the OGLE monitoring of the system (Wozniak et al. 2000a).Comment: 8 pages, 5 figures; accepted for publication in A&

Latitudinal differences in early growth of largehead hairtail (Trichiurus japonicus) in relation to environmental variables

Largehead hairtail (Trichiurus japonicus) in the China Seas shows an increasing catch trend, despite continued overexploitation, which could be attributed to improved recruitment as a result of strengthened early growth. To understand the early growth variability of largehead hairtail, we examined the linkages between early growth, as revealed by otolith microstructure, and the associated environmental variables over both spatial and temporal scales. Young‐of‐the‐Year largehead hairtail were collected from three regions in the Bohai, Yellow and East China Seas between 29° and 39° N. Daily increment widths of sagittal otoliths were measured and used as a proxy for somatic growth. We found two spawning cohorts, Spring‐ and Summer‐spawned cohorts, that showed latitudinal differences in both mean growth and growth pattern. The transition time from larval to juvenile stage was identified at around 40 days. Daily increment widths of two cohorts showed similar growth pattern in the first 40 days, while location had a marked effect on daily growth over 41–110 days. This suggests physiologically constrained growth pattern in larval stage, but more plastic growth subject to habitat‐specific influences in juvenile stage. The gradient forest analysis identified sea bottom temperature, vertical temperature gradient, and sea surface salinity, as the most important variables in determining early growth. Latitudinal differences in early growth pattern and their response to environmental variables suggest adaptive plasticity of early growth, which has notable implication for the management and sustainable utilization of this important but heavily exploited resource in the China Seas.acceptedVersio

New Results on the Submillimeter Polarization Spectrum of the Orion Molecular Cloud

We have used the SHARP polarimeter at the Caltech Submillimeter Observatory to map the polarization at wavelengths of 350 and 450 micron in a ~2 x 3 arcmin region of the Orion Molecular Cloud. The map covers the brightest region of the OMC-1 ridge including the Kleinmann-Low (KL) nebula and the submillimeter source Orion-south. The ratio of 450-to-350 micron polarization is ~ 1.3 +/- 0.3 in the outer parts of the cloud and drops by a factor of 2 towards KL. The outer cloud ratio is consistent with measurements in other clouds at similar wavelengths and confirms previous measurements placing the minimum of the polarization ratio in dusty molecular clouds at a wavelength ~ 350 micron.Comment: 7 pages, 6 figures, submitted to ApJ Let

Sudden change in long-term ocean climate fluctuations corresponds with ecosystem alterations and reduced recruitment in Norwegian spring-spawning herring (Clupea harengus, Clupeidae)

Fish stocks vary in abundance. The causes behind the fluctuations may be difficult to determine, especially ones caused by natural fluctuations, but long‐term data series may provide indications of the mechanisms. Assessments show that the recruitment to the Norwegian spring‐spawning herring (Clupea harengus, Clupeidae) has remained low since 2004, a year which produced the last really rich year‐class. Long time‐series of estimated recruitment and mean winter temperature in the ocean showed a significant positive correlation for the period 1921–2004. Here, we show that this positive correlation did not continue from 2005 onwards as the winter temperature increased to high levels while herring recruitment decreased and has remained low. The density of zooplankton in the drift route of the herring larvae dropped significantly after 2004, and their centre of gravity shifted northwards. There may currently be heavy predation on the larvae by Atlanic mackerel (Scomber scombrus, Scombridae), and top‐down regulation is suggested to hamper successful recruitment. Our analysis indicates that the presence of food and overlap with high food concentrations are likely important regulators of survival in herring larvae. The findings may be important for future management and planning of fisheries of this stock because recruitment failure may continue if temperature remains high and food abundance remains low.publishedVersio

Me against who? Male guppies adjust mating behaviour according to their rival’s presence and attractiveness

This work was supported by Portuguese National Funds through FCT (Fundação para a Ciência e a Tecnologia), within the cE3c Unit FCT funding (grant number UID/BIA/00329/2013), IO PhD grant (SFRH/BD/90686/2012) and SAMV (SFRH/BPD/66042/2009 and PTDC/BIA‐ANM/0810/14) and MB (SFRH/BPD/82259/2011) Post‐Doctoral research grants. This work was also supported by the ERC (European Research Council) AdG BioTIME (250189) to AEM.Sexual selection theory suggests that males need to constantly reappraise their mating decisions to take account of the presence and the phenotypes of their rivals. Here we examine this expectation by asking: (i) If the presence of a rival influences male mating behaviour; (ii) How important is the attractiveness of the rival (absolute attractiveness) in shaping male behaviour; and (iii) How does a male's attractiveness in comparison to his rival (relative attractiveness) influence a male's mating decisions. Using the Trinidadian guppy, a species in which female mate choice (based on males’ attractive traits) plays an important role in male mating outcomes, we recorded the frequency of courtship displays and unsolicited attempts by focal males. First, we quantified focal male mating behaviour with and without a rival. Since the probability of a successful mating is, on average, halved by the presence of a rival, we predicted that under competition the focal male would invest more in less costly mating tactic—unsolicited attempts. Second, we examined how the rival's standard length and area of orange coloration mediated focal male mating behaviour. We found that rival presence influenced how focal males responded to females in terms of both mating tactics. However, the rival attractiveness elicited changes only in male courtship display. Focal males increased courtship display rate if his rival was small or if possessed large amounts of orange, regardless of considering rival absolute or relative attractiveness. Our results show that males invest in the costlier mating tactic when there is no rival or in the presence of a smaller rival. Interestingly, they make a similar investment in the presence of an attractive orange rival. Overall, this study highlights the importance of fine‐grained male decisions in mating encounters and shows that mating tactics are differentially shaped by multiple competition risk cues.PostprintPeer reviewe

Detection of Hepatitis E virus in swine using real-time RT-PCR

The zoonotic transmtsswn potential of Hepatitis E virus (HEY) is now widely recognized. Swine represents the main animal reservoir for this virus in many countries, including Canada. In recent years, different real-time RT-PCR assays were developed and proposed as reliable and sensitive detection methods. However, the quality of extracted RNA, presence of inhibitors and RN ase contamination of the samples may impact on the detection results obtained with these molecular methods. The aim of this study was to evaluate the use of a sample process control (SPC) within a real-time RT-PCR assay for the detection ofHEV. This TaqMan multiplex assay was afterwards used to evaluate the viral load ofHEV in organs, tissues and excreta of normal pigs at slaughter. HEY RNA was detected in at least one sample from 14 out of the 43 animals tested (32.6 %). HEV was present in lymph nodes (25.6%), bladder (23.3%), liver (20.9%), bile (18.6%), feces (13.9%), tonsils (7.0%) and plasma (2.3%) but was undetected in loins