3,378 research outputs found
Agents in Bioinformatics
The scope of the Technical Forum Group (TFG) on Agents in Bioinformatics (BIOAGENTS) was to inspire collaboration between the agent and bioinformatics communities with the aim of creating an opportunity to propose a different (agent-based) approach to the development of computational frameworks both for data analysis in bioinformatics and for system modelling in computational biology. During the day, the participants examined the future of research on agents in bioinformatics primarily through 12 invited talks selected to cover the most relevant topics. From the discussions, it became clear that there are many perspectives to the field, ranging from bio-conceptual languages for agent-based simulation, to the definition of bio-ontology-based declarative languages for use by information agents, and to the use of Grid agents, each of which requires further exploration. The interactions between participants encouraged the development of applications that describe a way of creating agent-based simulation models of biological systems, starting from an hypothesis and inferring new knowledge (or relations) by mining and analysing the huge amount of public biological data. In this report we summarise and reflect on the presentations and discussions
Integrating Information Literacy into the Virtual University: A Course Model
published or submitted for publicatio
The Pulsation Mode and Distance of the Cepheid FF Aquilae
The determination of pulsation mode and distance for field Cepheids is a
complicated problem best resolved by a luminosity estimate. For illustration a
technique based on spectroscopic luminosity discrimination is applied to the
4.47d s-Cepheid FF Aql. Line ratios in high dispersion spectra of the variable
yield values of =-3.40+-0.02 s.e.(+-0.04 s.d.), average effective
temperature Teff=6195+-24 K, and intrinsic color (-)o = +0.506+-0.007,
corresponding to a reddening of E(B-V)=0.25+-0.01, or E(B-V)(B0)=0.26+-0.01.
The skewed light curve, intrinsic color, and luminosity of FF Aql are
consistent with fundamental mode pulsation for a small amplitude classical
Cepheid on the blue side of the instability strip, not a sinusoidal pulsator. A
distance of 413+-14 pc is estimated from the Cepheid's angular diameter in
conjunction with a mean radius of =39.0+-0.7 Rsun inferred from its
luminosity and effective temperature. The dust extinction towards FF Aql is
described by a ratio of total-to-selective extinction of
Rv=Av/E(B-V)=3.16+-0.34 according to the star's apparent distance modulus.Comment: To appear in ApJ
Doctrina perpetua: brokering change, promoting innovation and transforming marginalisation in university learning and teaching [Editors introduction]
Doctrina perpetuaâtranslated variously as âforever learningâ (Cryle, 1992, p. 27), âlifelong
learningâ and âlifelong educationââis the Latin motto of Central Queensland University (CQU), an
Australian regional university with campuses in Central Queensland and the metropolitan and
provincial cities of Brisbane, the Gold Coast, Melbourne and Sydney and with centres in China, Fiji,
Hong Kong and Singapore.
During its early development the institution was small and regional; in many ways it was an
institution at the margins of higher education. For only a third of its 40-year life has it been recognised
as a university. However, the vision of both its founders and its continuing staff has been that of an
institution that actively brokers change, promotes innovation and seeks to transform marginalisationâ
for students, for its community and for itself. Its short life on the edge of the universe of higher
education has promoted a culture of innovation and an acceptance that change is a necessary and
positive aspect of life on the edge. Embracing change, CQU has become a complex institution, a notion
well expressed in a speech in August 1999 by former Vice-Chancellor Lauchlan Chipman on Visioning
Our Future:
I have often remarked that I do not see CQU as âthe last university of the old
millenniumâ but rather as âthe first university of the new millenniumâ. One of our
greatest strengths in making the transition is our relative immaturity as a university. The
more mature a university, especially if it is successful, the less agile it is when it comes
to the need to change. So far as the future of universities and change is concerned, my
position is unequivocally Heraclitean: change is the only thing that is permanent.
Applying to itself the motto âdoctrina perpetuaâ over its short life, the agile University has become
a âcomplex and diverse organisationâ (Danaher, Harreveld, Luck & Nouwens, 2004, p. 13). This
overview of CQU seeks to provide readers with a short description of the current state of the institution
and the story of its development to provide a context for understanding the chapters that follow, and to
assist readers to reflect on how these developments at CQU relate to higher education generally, and to
the universities with which they are more familiar
Reddenings of FGK supergiants and classical Cepheids from spectroscopic data
Accurate and homogeneous atmospheric parameters (Teff, log (g), Vt, [Fe/H])
are derived for 74 FGK non-variable supergiants from high-resolution, high
signal-to-noise ratio, echelle spectra. Extremely high precision for the
inferred effective temperatures (10-40 K) is achieved by using the line-depth
ratio method. The new data are combined with atmospheric values for 164
classical Cepheids, observed at 675 different pulsation phases, taken from our
previously published studies. The derived values are correlated with unreddened
B-V colours compiled from the literature for the investigated stars in order to
obtain an empirical relationship of the form: (B-V)o = 57.984 - 10.3587(log
Teff)^2 + 1.67572(log Teff)^3 - 3.356(log (g)) + 0.0321(Vt) + 0.2615[Fe/H] +
0.8833((log (g))(log Teff)). The expression is used to estimate colour excesses
E(B-V) for individual supergiants and classical Cepheids, with a precision of
+-0.05 mag. for supergiants and Cepheids with n=1-2 spectra, reaching +-0.025
mag. for Cepheids with n>2 spectra, matching uncertainties for the most
sophisticated photometric techniques. The reddening scale is also a close match
to the system of space reddenings for Cepheids. The application range is for
spectral types F0--K0 and luminosity classes I and II.Comment: accepted for publication (MNRAS
Statistics of quantum transmission in one dimension with broad disorder
We study the statistics of quantum transmission through a one-dimensional
disordered system modelled by a sequence of independent scattering units. Each
unit is characterized by its length and by its action, which is proportional to
the logarithm of the transmission probability through this unit. Unit actions
and lengths are independent random variables, with a common distribution that
is either narrow or broad. This investigation is motivated by results on
disordered systems with non-stationary random potentials whose fluctuations
grow with distance.
In the statistical ensemble at fixed total sample length four phases can be
distinguished, according to the values of the indices characterizing the
distribution of the unit actions and lengths. The sample action, which is
proportional to the logarithm of the conductance across the sample, is found to
obey a fluctuating scaling law, and therefore to be non-self-averaging, in
three of the four phases. According to the values of the two above mentioned
indices, the sample action may typically grow less rapidly than linearly with
the sample length (underlocalization), more rapidly than linearly
(superlocalization), or linearly but with non-trivial sample-to-sample
fluctuations (fluctuating localization).Comment: 26 pages, 4 figures, 1 tabl
Competition and cooperation:aspects of dynamics in sandpiles
In this article, we review some of our approaches to granular dynamics, now
well known to consist of both fast and slow relaxational processes. In the
first case, grains typically compete with each other, while in the second, they
cooperate. A typical result of {\it cooperation} is the formation of stable
bridges, signatures of spatiotemporal inhomogeneities; we review their
geometrical characteristics and compare theoretical results with those of
independent simulations. {\it Cooperative} excitations due to local density
fluctuations are also responsible for relaxation at the angle of repose; the
{\it competition} between these fluctuations and external driving forces, can,
on the other hand, result in a (rare) collapse of the sandpile to the
horizontal. Both these features are present in a theory reviewed here. An arena
where the effects of cooperation versus competition are felt most keenly is
granular compaction; we review here a random graph model, where three-spin
interactions are used to model compaction under tapping. The compaction curve
shows distinct regions where 'fast' and 'slow' dynamics apply, separated by
what we have called the {\it single-particle relaxation threshold}. In the
final section of this paper, we explore the effect of shape -- jagged vs.
regular -- on the compaction of packings near their jamming limit. One of our
major results is an entropic landscape that, while microscopically rough,
manifests {\it Edwards' flatness} at a macroscopic level. Another major result
is that of surface intermittency under low-intensity shaking.Comment: 36 pages, 23 figures, minor correction
Surface Properties of Aperiodic Ising Quantum Chains
We consider Ising quantum chains with quenched aperiodic disorder of the
coupling constants given through general substitution rules. The critical
scaling behaviour of several bulk and surface quantities is obtained by exact
real space renormalization.Comment: 4 pages, RevTex, reference update
Structure of the stationary state of the asymmetric target process
We introduce a novel migration process, the target process. This process is
dual to the zero-range process (ZRP) in the sense that, while for the ZRP the
rate of transfer of a particle only depends on the occupation of the departure
site, it only depends on the occupation of the arrival site for the target
process. More precisely, duality associates to a given ZRP a unique target
process, and vice-versa. If the dynamics is symmetric, i.e., in the absence of
a bias, both processes have the same stationary-state product measure. In this
work we focus our interest on the situation where the latter measure exhibits a
continuous condensation transition at some finite critical density ,
irrespective of the dimensionality. The novelty comes from the case of
asymmetric dynamics, where the target process has a nontrivial fluctuating
stationary state, whose characteristics depend on the dimensionality. In one
dimension, the system remains homogeneous at any finite density. An alternating
scenario however prevails in the high-density regime: typical configurations
consist of long alternating sequences of highly occupied and less occupied
sites. The local density of the latter is equal to and their
occupation distribution is critical. In dimension two and above, the asymmetric
target process exhibits a phase transition at a threshold density much
larger than . The system is homogeneous at any density below ,
whereas for higher densities it exhibits an extended condensate elongated along
the direction of the mean current, on top of a critical background with density
.Comment: 30 pages, 16 figure
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