Glacier runoff influences biogeochemistry and resource availabilityin coastal temperate rainforest streams: Implications for juvenile salmon growth

Meltwater contributions to watersheds are shrinking as glaciers disappear, altering theflow, temperature, andbiogeochemistry of freshwaters. A potential consequence of this landscape change is that streamflow patternswithin glacierized watersheds will become more homogenous, potentially altering the capacity of watersheds tosupport Pacific salmon. To assess heterogeneity in stream habitat quality for juvenile salmon in a watershed inthe Alaska Coast Mountains, we collected organic matter and invertebrate drift and measured streamwater phys-ical and biogeochemical properties over the main runoff season in two adjacent tributaries, one fed mainly byrain and the other partially by glacier ice/snowmelt. We then used bioenergetic modeling to evaluate how tem-poral patterns in water temperature and invertebrate drift in each tributary influence juvenile salmon growthpotential. Across the study period, average invertebrate drift concentrations were similar in non-glacierizedMontana (0.33 mg m 3) and glacier-influenced McGinnis Creeks (0.38 mg m 3). However, seasonal patterns ofinvertebrate drift were temporally asynchronous between the two streams. Invertebrate drift and modeledfishgrowth were generally higher in McGinnis Creek in the spring and Montana Creek in the Summer. For juvenilesalmon, tracking these resource asynchronies by moving between tributaries resulted in 20% greater growththan could be obtained within either stream alone. These results suggest that hydrologic heterogeneity withinwatersheds may enhance the diversity of foraging and growth opportunities for mobile aquatic organisms,which may be essential for supporting productive and resilient natural salmon runs.Ye

Glacier runoff influences biogeochemistry and resource availabilityin coastal temperate rainforest streams: Implications for juvenile salmon growth

Meltwater contributions to watersheds are shrinking as glaciers disappear, altering theflow, temperature, andbiogeochemistry of freshwaters. A potential consequence of this landscape change is that streamflow patternswithin glacierized watersheds will become more homogenous, potentially altering the capacity of watersheds tosupport Pacific salmon. To assess heterogeneity in stream habitat quality for juvenile salmon in a watershed inthe Alaska Coast Mountains, we collected organic matter and invertebrate drift and measured streamwater phys-ical and biogeochemical properties over the main runoff season in two adjacent tributaries, one fed mainly byrain and the other partially by glacier ice/snowmelt. We then used bioenergetic modeling to evaluate how tem-poral patterns in water temperature and invertebrate drift in each tributary influence juvenile salmon growthpotential. Across the study period, average invertebrate drift concentrations were similar in non-glacierizedMontana (0.33 mg m 3) and glacier-influenced McGinnis Creeks (0.38 mg m 3). However, seasonal patterns ofinvertebrate drift were temporally asynchronous between the two streams. Invertebrate drift and modeledfishgrowth were generally higher in McGinnis Creek in the spring and Montana Creek in the Summer. For juvenilesalmon, tracking these resource asynchronies by moving between tributaries resulted in 20% greater growththan could be obtained within either stream alone. These results suggest that hydrologic heterogeneity withinwatersheds may enhance the diversity of foraging and growth opportunities for mobile aquatic organisms,which may be essential for supporting productive and resilient natural salmon runs.Ye

Risk of COVID-19 after natural infection or vaccination

BACKGROUND: While vaccines have established utility against COVID-19, phase 3 efficacy studies have generally not comprehensively evaluated protection provided by previous infection or hybrid immunity (previous infection plus vaccination). Individual patient data from US government-supported harmonized vaccine trials provide an unprecedented sample population to address this issue. We characterized the protective efficacy of previous SARS-CoV-2 infection and hybrid immunity against COVID-19 early in the pandemic over three-to six-month follow-up and compared with vaccine-associated protection. METHODS: In this post-hoc cross-protocol analysis of the Moderna, AstraZeneca, Janssen, and Novavax COVID-19 vaccine clinical trials, we allocated participants into four groups based on previous-infection status at enrolment and treatment: no previous infection/placebo; previous infection/placebo; no previous infection/vaccine; and previous infection/vaccine. The main outcome was RT-PCR-confirmed COVID-19 \u3e7-15 days (per original protocols) after final study injection. We calculated crude and adjusted efficacy measures. FINDINGS: Previous infection/placebo participants had a 92% decreased risk of future COVID-19 compared to no previous infection/placebo participants (overall hazard ratio [HR] ratio: 0.08; 95% CI: 0.05-0.13). Among single-dose Janssen participants, hybrid immunity conferred greater protection than vaccine alone (HR: 0.03; 95% CI: 0.01-0.10). Too few infections were observed to draw statistical inferences comparing hybrid immunity to vaccine alone for other trials. Vaccination, previous infection, and hybrid immunity all provided near-complete protection against severe disease. INTERPRETATION: Previous infection, any hybrid immunity, and two-dose vaccination all provided substantial protection against symptomatic and severe COVID-19 through the early Delta period. Thus, as a surrogate for natural infection, vaccination remains the safest approach to protection. FUNDING: National Institutes of Health

Crucial elements that maintain the interactions between the regulatory TnaC peptide and the ribosome exit tunnel responsible for Trp inhibition of ribosome function

Translation of the TnaC nascent peptide inhibits ribosomal activity in the presence of l-tryptophan, inducing expression of the tnaCAB operon in Escherichia coli. Using chemical methylation, this work reveals how interactions between TnaC and the ribosome are affected by mutations in both molecules. The presence of the TnaC-tRNAPro peptidyl-tRNA within the ribosome protects the 23S rRNA nucleotide U2609 against chemical methylation. Such protection was not observed in mutant ribosomes containing changes in 23S rRNA nucleotides of the A748–A752 region. Nucleotides A752 and U2609 establish a base-pair interaction. Most replacements of either A752 or U2609 affected Trp induction of a TnaC-regulated LacZ reporter. However, the single change A752G, or the dual replacements A752G and U2609C, maintained Trp induction. Replacements at the conserved TnaC residues W12 and D16 also abolished the protection of U2609 by TnaC-tRNAPro against chemical methylation. These data indicate that the TnaC nascent peptide in the ribosome exit tunnel interacts with the U2609 nucleotide when the ribosome is Trp responsive. This interaction is affected by mutational changes in exit tunnel nucleotides of 23S rRNA, as well as in conserved TnaC residues, suggesting that they affect the structure of the exit tunnel and/or the nascent peptide configuration in the tunnel

Association of HIV infection with distribution and viral load of HPV types in Kenya: a survey with 820 female sex workers

<p>Abstract</p> <p>Background</p> <p>Human papillomavirus (HPV) and HIV are each responsible for a considerable burden of disease. Interactions between these infections pose substantial public health challenges, especially where HIV prevalence is high and HPV vaccine coverage low.</p> <p>Methods</p> <p>Between July 2005 and January 2006, a cross-sectional community-based survey in Mombasa, Kenya, enrolled female sex workers using snowball sampling. After interview and a gynaecological examination, blood and cervical cytology samples were taken. Quantitative real-time PCR detected HPV types and viral load measures. Prevalence of high-risk HPV was compared between HIV-infected and -uninfected women, and in women with abnormal cervical cytology, measured using conventional Pap smears.</p> <p>Results</p> <p>Median age of the 820 participants was 28 years (inter-quartile range [IQR] = 24-36 years). One third of women were HIV infected (283/803; 35.2%) and these women were y more likely to have abnormal cervical cytology than HIV-negative women (27%, 73/269, versus 8%, 42/503; <it>P </it>< 0.001). Of HIV-infected women, 73.3% had high-risk HPV (200/273) and 35.5% had HPV 16 and/or 18 (97/273). Corresponding figures for HIV-negative women were 45.5% (229/503) and 15.7% (79/503). After adjusting for age, number of children and condom use, high-risk HPV was 3.6 fold more common in HIV-infected women (95%CI = 2.6-5.1). Prevalence of all 15 of the high-risk HPV types measured was higher among HIV-infected women, between 1.4 and 5.5 fold. Median total HPV viral load was 881 copies/cell in HIV-infected women (IQR = 33-12,110 copies/cell) and 48 copies/cell in HIV-uninfected women (IQR = 6-756 copies/cell; <it>P </it>< 0.001). HPV 16 and/or HPV 18 were identified in 42.7% of LSIL (32/75) and 42.3% of HSIL (11/26) lesions (<it>P </it>= 0.98). High-risk HPV types other than 16 and 18 were common in LSIL (74.7%; 56/75) and HSIL (84.6%; 22/26); even higher among HIV-infected women.</p> <p>Conclusions</p> <p>HIV-infected sex workers had almost four-fold higher prevalence of high-risk HPV, raised viral load and more precancerous lesions. HPV 16 and HPV 18, preventable with current vaccines, were associated with cervical disease, though other high-risk types were commoner. HIV-infected sex workers likely contribute disproportionately to HPV transmission dynamics in the general population. Current efforts to prevent HIV and HPV are inadequate. New interventions are required and improved implementation of existing strategies.</p

Building a Food Web Portfolio: Hydrologic Heterogeneity Creates Food Web Diversity on a Glacial Meltwater Landscape

Meltwater streams fed by glaciers, icefields, and snow frequently have flow, temperature, and biogeochemical regimes distinct from non-meltwater streams. This physicochemical heterogeneity may support a diversity of freshwater food webs in landscapes where meltwater and non-meltwater streams currently co-occur. Additionally, these streams exist along a continuum which may serve as a space-for-time proxy for changes to physicochemical conditions as glacial and snowmelt influence diminishes with climate change. However, there remains a paucity of knowledge about how food webs are assembled on these rapidly changing landscapes. In the following pages, I describe three studies which examine how the structure of food webs supporting Pacific salmon vary between four streams in coastal southeast Alaska: glacier-fed, snow-fed, rain-fed, and one fed by a combination of rain, snow and glacial-melt. I first assess the temporal dynamics and synchrony of abiotic patterns and biomass waves of the trophic base of the food web. I then analyze the community structure and secondary production dynamics of the aquatic invertebrate community at an annual scale. Lastly, I present quantitative flow food web models using trophic-basis-of-production approach to illuminate the pathways of energy flow that support juvenile salmon. Using these approaches, I found that these cryospheric streams vary greatly in the biophysical patterns and community diversity and structuring. These differences, in turn, create distinct trophic pathways that support fish production between stream types with few shared links between and a greater number of resource flows supporting Coho and Dolly Varden in glacial- and snowmelt streams and substantial overlap in rainwater and combined-signature sites. Although glacial meltwater streams may be less productive overall, they support fish via distinct and diverse pathways from non-meltwater streams and contribute to landscape variation and prey community beta diversity is theorized to increase food resilience and stability. This may be especially true for mobile consumers like juvenile salmon which may track different growth opportunities and energy flow pathways across spatially structured food webs. As glacial and snowmelt contributions to surface waters decline, these distinct meltwater food webs are at risk of extirpation, which could leave salmon populations vulnerable to disturbance and may simplify the overall community structure on the landscape.doctoral, Ph.D., Water Resources -- University of Idaho - College of Graduate Studies, 2022-1

Coupling Charge Reduction Mass Spectrometry to Liquid Chromatography for Complex Mixture Analysis

Electrospray ionization (ESI) of solution mixtures often generates complex mass spectra, even following liquid chromatography (LC), due to analyte multiple charging. Multiple charge state distributions can lead to isobaric interferences, mass spectral congestion, and ambiguous ion identification. As a consequence, data interpretation increases in complexity. Several charge reduction mass spectrometry (MS) approaches have been previously developed to reduce the average charge state of gaseous ions; however, all of these techniques have been restricted to direct infusion MS. In this study, synthetic polyols and surfactants separated by liquid chromatography and ionized by positive mode ESI have been subjected to polonium-210 α-particle radiation to reduce the average charge state to singly charged cations prior to mass analysis. LC/MS analysis of 5000 molecular weight poly­(ethylene glycol) (PEG5000) generated an average charge state of 5.88+; whereupon, liquid chromatography/electrospray ionization/charge reduction/mass spectrometry (LC/CR/MS) analysis of PEG 5000 generated an average charge state of 1.00+. The PEG5000 results demonstrated a decrease in spectral complexity and enabled facile interpretation. Other complex solution mixtures representing specific MS challenges (i.e., competitive ionization and isobaric ion overlap) were explored and analyzed with LC/CR/MS to demonstrate the benefits of coupling LC to CR/MS. For example, polyol information related to initiator, identity/relative amount of monomer, and estimated molecular weight was characterized in random and triblock ethylene oxide/propylene oxide polyols using LC/CR/MS. LC/CR/MS is a new analytical technique for the analysis of complex mixtures