Multivariate restricted maximum likelihood estimation of genetic parameters for growth, carcass and meat quality traits in French Large White and French Landrace pigs

Genetic parameters of 7 traits measured in central test stations - average daily gain (ADG1), feed conversion ratio (FCR) and backfat thickness (ABT) measured on candidates for selection, and average daily gain (ADG2), dressing percentage (DP), estimated carcass lean content (ECLC) and meat quality index (MQI) measured in slaughtered relatives - were estimated for the Large White (LW) and French Landrace (LR) breeds using a derivative free restricted maximum likelihood (DF-REML) procedure applied to a multiple trait individual animal model. The data consisted of 2 sets of records (3 671 and 3 630 candidates, 3 039 and 2 695 slaughtered animals in, respectively, LW and LR breeds) collected at 3 different stations from 1985-1990 (LW) or 1980-1990 (LR). The models included additive genetic value, common environment of birth litter and residual random effects, a fixed year x station x batch or year x station x slaughter date effect and, for traits measured in slaughtered animals, a fixed sex effect and a covariable (weight at the beginning or at the end of the test period). Heritabilities of ADG1, ABT, FCR, ADG2, DP, ECLC and MQI were respectively 0.30, 0.64, 0.22, 0.52, 0.39, 0.60, 0.33 in the LW and 0.34, 0.56, 0.25, 0.46, 0.31, 0.68, 0.23 in the LR breed. Common litter effects ranged from 5% (ABT in LW breed) to 16% (ADG2 in LR breed) of phenotypic variance. Growth traits and FCR exhibited favourable genetic correlations, but were unfavourably correlated to DP and carcass lean content. MQI also showed unfavourable though generally low genetic correlations with all the other traits. These antagonisms were apparent in both breeds, but tended to be larger in the LW than in the LR breed.Les paramètres génétiques de sept caractères mesurés dans les stations publiques de contrôle de performance - le gain moyen quotidien (GMQ1), l’indice de consommation (IC) et l’épaisseur de lard (ELD) mesurés sur les candidats à la sélection ainsi que le gain moyen quotidien (GMQ2), le rendement de carcasse (RDT), le pourcentage de muscle (PM) et l’indice de qualité de la viande (IQV) mesurés sur des apparentés abattus - ont été estimés pour les races Large White (LW) et Landrace français (LR) à l’aide du maximum de vraisemblance restreinte appliqué à un modèle animal multicaractères. Deux fichiers de tailles comparables (3 671 et 3 630 candidats, 3 039 et 2 695 animaux abattus, respectivement, pour les races LW et LR) ont été constitués à partir des données collectées dans trois stations au cours des périodes 1985-90 (LW) et 1980-90 (LR). Les modèles d’analyse incluaient les effets aléatoires de la valeur génétique additive de l’animal, du milieu commun de la portée de naissance, l’effet fixé de l’année x station x bande ou de l’année x station x date d’abattage et, pour les caractères mesurés chez les animaux abattus, l’effet fixé du sexe et une covariable (poids au début ou à la fin du contrôle). Les valeurs d’héritabilité de GMQ1, ELD, IC, GMQ2, RDT, PM et IQV s’élèvent respectivement à 0,30; 0,64; 0,22; 0,52; 0,39; 0,60; 0,33 en race LW et 0,34; 0,56; 0,25; 0,46; 0,31; 0,68; 0,23 en race LR. Les effets de milieu commun de la portée de naissance représentent de 5% (ELD en race LW) à 16% (GMQ2 en race GR) de la variance phénotypique. La croissance et l’indice de consommation présentent entre eux des corrélations génétiques favorables, mais sont corrélés de façon défavorable au rendement et au taux de muscle de la carcasse. L’IQV présente également des corrélations génétiques défavorables, bien qu’en général faibles, avec l’ensemble des autres caractères. Ces antagonismes existent dans les deux races, mais tendent à être plus marqués en race LW que LR

Global Analysis of Aerosol Properties Above Clouds

The seasonal and spatial varability of Aerosol Above Cloud (AAC) properties are derived from passive satellite data for the year 2008. A significant amount of aerosols are transported above liquid water clouds on the global scale. For particles in the fine mode (i.e., radius smaller than 0.3 m), including both clear sky and AAC retrievals increases the global mean aerosol optical thickness by 25(+/- 6%). The two main regions with man-made AAC are the tropical Southeast Atlantic, for biomass burning aerosols, and the North Pacific, mainly for pollutants. Man-made AAC are also detected over the Arctic during the spring. Mineral dust particles are detected above clouds within the so-called dust belt region (5-40 N). AAC may cause a warming effect and bias the retrieval of the cloud properties. This study will then help to better quantify the impacts of aerosols on clouds and climate

Екологія: наукова сутність, об'єкти досліджень, завдання

Розкрита суть чотирьох основних розділів екології: аутекології, демекології, синекології та екосистемології; описані об’єкти, предмет і завдання останньої. Визначена роль розумової і виробничої діяльности людства як зовнішнього збурювального чинника щодо живих систем і як організатора соціосфери. Обґрунтовані завдання екосистемології у теперішніх геосоціальних умовах.The matters of the four main divisions in ecology, such as autecology, demecology, synecology and ecosystemology have been uncovered. The objects, subjects and assignments of the latter were described too. A part of mankind’s mental and industrial activities, which are outside disturbing factors for biosystems and sociosphere organisers, has been determined. The assignments of ecosystemology within present geosocial condition were well grounded in the article

Intercomparison of desert dust optical depth from satellite measurements

This work provides a comparison of satellite retrievalsof Saharan desert dust aerosol optical depth (AOD)during a strong dust event through March 2006. In this event,a large dust plume was transported over desert, vegetated,and ocean surfaces. The aim is to identify the differencesbetween current datasets. The satellite instruments consideredare AATSR, AIRS, MERIS, MISR, MODIS, OMI,POLDER, and SEVIRI. An interesting aspect is that the differentalgorithms make use of different instrument characteristicsto obtain retrievals over bright surfaces. These includemulti-angle approaches (MISR, AATSR), polarisationmeasurements (POLDER), single-view approaches using solarwavelengths (OMI, MODIS), and the thermal infraredspectral region (SEVIRI, AIRS). Differences between instruments,together with the comparison of different retrievalalgorithms applied to measurements from the same instrument,provide a unique insight into the performance andcharacteristics of the various techniques employed. As wellas the intercomparison between different satellite products,the AODs have also been compared to co-located AERONETdata. Despite the fact that the agreement between satellite andAERONET AODs is reasonably good for all of the datasets,there are significant differences between them when comparedto each other, especially over land. These differencesare partially due to differences in the algorithms, such as assumptionsabout aerosol model and surface properties. However,in this comparison of spatially and temporally averageddata, it is important to note that differences in sampling, relatedto the actual footprint of each instrument on the heterogeneousaerosol field, cloud identification and the qualitycontrol flags of each dataset can be an important issue

Multi-species sociology of the body

The human body has become a central focus in sociology. Such work has centred largely on the human body and its significance in social contexts. This article draws on sociological understandings of human embodiment, especially the idea of the ‘body as a project’, to facilitate a multi-species understanding of bodies and their entanglements. Conceptualising the body as a project has provided sociological insights into the scientific and technological innovations that are designed to improve health and delay death. Nonhuman animals are entangled in these efforts, though their presence is often occluded. By examining notions of body masks, body regimes and body options, which are well established in sociological thinking about the body, this article seeks to prompt consideration of how to utilise theories of the body to examine human–nonhuman animal entanglements in order to establish a multi-species sociology of the body

Aerosol retrieval experiments in the ESA Aerosol_cci project

Within the ESA Climate Change Initiative (CCI) project Aerosol_cci (2010–2013), algorithms for the production of long-term total column aerosol optical depth (AOD) datasets from European Earth Observation sensors are developed. Starting with eight existing pre-cursor algorithms three analysis steps are conducted to improve and qualify the algorithms: (1) a series of experiments applied to one month of global data to understand several major sensitivities to assumptions needed due to the ill-posed nature of the underlying inversion problem, (2) a round robin exercise of "best" versions of each of these algorithms (defined using the step 1 outcome) applied to four months of global data to identify mature algorithms, and (3) a comprehensive validation exercise applied to one complete year of global data produced by the algorithms selected as mature based on the round robin exercise. The algorithms tested included four using AATSR, three using MERIS and one using PARASOL. This paper summarizes the first step. Three experiments were conducted to assess the potential impact of major assumptions in the various aerosol retrieval algorithms. In the first experiment a common set of four aerosol components was used to provide all algorithms with the same assumptions. The second experiment introduced an aerosol property climatology, derived from a combination of model and sun photometer observations, as a priori information in the retrievals on the occurrence of the common aerosol components. The third experiment assessed the impact of using a common nadir cloud mask for AATSR and MERIS algorithms in order to characterize the sensitivity to remaining cloud contamination in the retrievals against the baseline dataset versions. The impact of the algorithm changes was assessed for one month (September 2008) of data: qualitatively by inspection of monthly mean AOD maps and quantitatively by comparing daily gridded satellite data against daily averaged AERONET sun photometer observations for the different versions of each algorithm globally (land and coastal) and for three regions with different aerosol regimes. The analysis allowed for an assessment of sensitivities of all algorithms, which helped define the best algorithm versions for the subsequent round robin exercise; all algorithms (except for MERIS) showed some, in parts significant, improvement. In particular, using common aerosol components and partly also a priori aerosol-type climatology is beneficial. On the other hand the use of an AATSR-based common cloud mask meant a clear improvement (though with significant reduction of coverage) for the MERIS standard product, but not for the algorithms using AATSR. It is noted that all these observations are mostly consistent for all five analyses (global land, global coastal, three regional), which can be understood well, since the set of aerosol components defined in Sect. 3.1 was explicitly designed to cover different global aerosol regimes (with low and high absorption fine mode, sea salt and dust)

Aneuploidy Detection in Pigs Using Comparative Genomic Hybridization: From the Oocytes to Blastocysts

Data on the frequency of aneuploidy in farm animals are lacking and there is the need for a reliable technique which is capable of detecting all chromosomes simultaneously in a single cell. With the employment of comparative genomic hybridization coupled with the whole genome amplification technique, this study brings new information regarding the aneuploidy of individual chromosomes in pigs. Focus is directed on in vivo porcine blastocysts and late morulas, 4.7% of which were found to carry chromosomal abnormality. Further, ploidy abnormalities were examined using FISH in a sample of porcine embryos. True polyploidy was relatively rare (1.6%), whilst mixoploidy was presented in 46.8% of embryos, however it was restricted to only a small number of cells per embryo. The combined data indicates that aneuploidy is not a prevalent cause of embryo mortality in pigs

Plant cell culture technology in the cosmetics and food industries : current state and future trends

The production of drugs, cosmetics, and food which are derived from plant cell and tissue cultures has a long tradition. The emerging trend of manufacturing cosmetics and food products in a natural and sustainable manner has brought a new wave in plant cell culture technology over the past 10 years. More than 50 products based on extracts from plant cell cultures have made their way into the cosmetics industry during this time, whereby the majority is produced with plant cell suspension cultures. In addition, the first plant cell culture-based food supplement ingredients, such as Echigena Plus and Teoside 10, are now produced at production scale. In this mini review, we discuss the reasons for and the characteristics as well as the challenges of plant cell culture-based productions for the cosmetics and food industries. It focuses on the current state of the art in this field. In addition, two examples of the latest developments in plant cell culture-based food production are presented, that is, superfood which boosts health and food that can be produced in the lab or at home

Comparison of Serum HBsAg Quantitation by Four Immunoassays, and Relationships of HBsAg Level with HBV Replication and HBV Genotypes

BACKGROUND: The decline in hepatitis B virus surface antigen (HBsAg) may be an early predictor of the viral efficacy of Hepatitis B virus (HBV) therapy. The HBsAg levels obtained by different immunoassays now need comparing and the relationships between levels of HBsAg and HBV DNA alongside HBsAg and genotype must be evaluated. METHODOLOGY/PRINCIPAL FINDINGS: HBsAg levels were compared among 80 patients using the Abbott Architect assay, a commercial immunoassay approved for HBsAg detection and quantitation, and three other assays derived from immunoassays approved for HBsAg detection (manufactured by Diasorin, Bio-Rad and Roche). Good correlation was found between the Abbot vs. Diasorin, Bio-Rad and Roche assays with narrow 95% limits of agreement and small mean differences: -0.06 to 0.11, -0.09 log(10) IU/mL; -0.57 to 0.64, -0.04 log(10) IU/mL; -0.09 to 0.45, -0.27 log(10) IU/mL, respectively. These agreements were not affected by genotypes A or D. HBsAg was weakly correlated with HBV DNA, whatever the HBsAg assay used: Abbott, ρ = 0.36 p = 0.001, Diasorin ρ = 0.34, p = 0.002; Bio-Rad ρ = 0.37, p<0.001; or Roche ρ = 0.41, p<0.001. This relationship between levels of HBsAg and HBV DNA seemed to depend on genotypes. Whereas HBsAg (Abbott assay) tended to correlate with HBV DNA for genotype A (ρ = 0.44, p = 0.02), no such correlation was significant for genotypes D (ρ = 0.29, p = 0.15). CONCLUSION/SIGNIFICANCE: The quantitation of HBsAg in routine clinical samples is comparable between the reference assay and the adapted assays with acceptable accuracy limits, low levels of variability and minimum discrepancy. While HBsAg quantitation is not affected by HBV genotype, the observed association between levels of HBsAg and HBV DNA seems genotype dependent