Neural evidence for a distinction between short-term memory and the focus of attention

It is widely assumed that the short-term retention of information is accomplished via maintenance of an active neural trace. However, we demonstrate that memory can be preserved across a brief delay despite the apparent loss of sustained representations. Delay period activity may, in fact, reflect the focus of attention, rather than STM. We unconfounded attention and memory by causing external and internal shifts of attention away from items that were being actively retained. Multivariate pattern analysis of fMRI indicated that only items within the focus of attention elicited an active neural trace. Activity corresponding to representations of items outside the focus quickly dropped to baseline. Nevertheless, this information was remembered after a brief delay. Our data also show that refocusing attention toward a previously unattended memory item can reactivate its neural signature. The loss of sustained activity has long been thought to indicate a disruption of STM, but our results suggest that, even for small memory loads not exceeding the capacity limits of STM, the active maintenance of a stimulus representation may not be necessary for its short-term retention

Spatially and temporally resolved measurements of NOxfluxes by airborne eddy covariance over Greater London

Flux measurements of nitrogen oxides (NOx) were made over London using airborne eddy covariance from a low-flying aircraft. Seven low-altitude flights were conducted over Greater London, performing multiple overpasses across the city during eight days in July 2014. NOx fluxes across the Greater London region (GLR) exhibited high heterogeneity and strong diurnal variability, with central areas responsible for the highest emission rates (20-30mgm-2h-1). Other high-emission areas included the M25 orbital motorway. The complexity of London's emission characteristics makes it challenging to pinpoint single emissions sources definitively using airborne measurements. Multiple sources, including road transport and residential, commercial and industrial combustion sources, are all likely to contribute to measured fluxes. Measured flux estimates were compared to scaled National Atmospheric Emissions Inventory (NAEI) estimates, accounting for monthly, daily and hourly variability. Significant differences were found between the flux-driven emissions and the NAEI estimates across Greater London, with measured values up to 2 times higher in Central London than those predicted by the inventory. To overcome the limitations of using the national inventory to contextualise measured fluxes, we used physics-guided flux data fusion to train environmental response functions (ERFs) between measured flux and environmental drivers (meteorological and surface). The aim was to generate time-of-day emission surfaces using calculated ERF relationships for the entire GLR; 98% spatial coverage was achieved across the GLR at 400m2 spatial resolution. All flight leg projections showed substantial heterogeneity across the domain, with high emissions emanating from Central London and major road infrastructure. The diurnal emission structure of the GLR was also investigated, through ERF, with the morning rush hour distinguished from lower emissions during the early afternoon. Overall, the integration of airborne fluxes with an ERF-driven strategy enabled the first independent generation of surface NOx emissions, at high resolution using an eddy-covariance approach, for an entire city region

COVID-19 lockdowns highlight a risk of increasing ozone pollution in European urban areas

In March 2020, non-pharmaceutical intervention measures in the form of lockdowns were applied across Europe to urgently reduce the transmission of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the virus which causes the COVID-19 disease. The aggressive curtailing of the European economy had widespread impacts on the atmospheric composition, particularly for nitrogen dioxide (NO2) and ozone (O3). To investigate these changes, we analyse data from 246 ambient air pollution monitoring sites in 102 urban areas and 34 countries in Europe between February and July 2020. Counterfactual, businessas-usual air quality time series are created using machinelearning models to account for natural weather variability. Across Europe, we estimate that NO2 concentrations were 34 % and 32 % lower than expected for respective traffic and urban background locations, whereas O3 was 30 % and 21 % higher (in the same respective environments) at the point of maximum restriction on mobility. To put the 2020 changes into context, average NO2 trends since 2010 were calculated, and the changes experienced across European urban areas in 2020 was equivalent to 7.6 years of average NO2 reduction (or concentrations which might be anticipated in 2028). Despite NO2 concentrations decreasing by approximately a third, total oxidant (Ox) changed little, suggesting that the reductions in NO2 were substituted by increases in O3. The lockdown period demonstrated that the expected future reductions in NO2 in European urban areas are likely to lead to widespread increases in urban O3 pollution unless additional mitigation measures are introduced

North Atlantic current and European slope current circulation in the Rockall Trough observed using moorings and gliders

The Rockall Trough (RT) accommodates the warmest and saltiest branch of the North Atlantic Current, which delivers water from the Gulf Stream into the marine environment around western Europe. In addition, the European Slope Current (ESC) carries warm water northward along the eastern boundary of the RT, and exchange between the ESC and the continental shelf is a dominant factor in determining the oceanographic conditions around the British Isles. However, the picture of the mean circulation and variability in the RT is still emerging, with a continuous observational campaign still in its relative infancy. The ESC, in particular, is poorly constrained by ship-based, mooring, and satellite observations. In this paper, we examine the RT circulation and volume transport using a temporally extended and spatially expanded observing network. Six years of continuous mooring occupation reveal that a large-amplitude, basin-scale freshening event, previously detected south of Iceland around 2015, impacted the RT around 2017. Geostrophic transport was greatly reduced during this period, driven by a concurrent subsurface temperature increase at the western boundary. The circulation regained strength during the latter part of the record. We gathered 110 glider transects over 22 months which capture the ESC velocity field in unprecedented detail. The data are sufficient to characterize both the mean state and the emergent seasonal variability of the ESC, and reveal the year-round presence of a southward countercurrent at depth. Variability in the strength and structure of this previously unstudied feature modulates net northward transport in the eastern boundary current system

Annotation of the Drosophila melanogaster euchromatic genome: a systematic review

BACKGROUND: The recent completion of the Drosophila melanogaster genomic sequence to high quality and the availability of a greatly expanded set of Drosophila cDNA sequences, aligning to 78% of the predicted euchromatic genes, afforded FlyBase the opportunity to significantly improve genomic annotations. We made the annotation process more rigorous by inspecting each gene visually, utilizing a comprehensive set of curation rules, requiring traceable evidence for each gene model, and comparing each predicted peptide to SWISS-PROT and TrEMBL sequences. RESULTS: Although the number of predicted protein-coding genes in Drosophila remains essentially unchanged, the revised annotation significantly improves gene models, resulting in structural changes to 85% of the transcripts and 45% of the predicted proteins. We annotated transposable elements and non-protein-coding RNAs as new features, and extended the annotation of untranslated (UTR) sequences and alternative transcripts to include more than 70% and 20% of genes, respectively. Finally, cDNA sequence provided evidence for dicistronic transcripts, neighboring genes with overlapping UTRs on the same DNA sequence strand, alternatively spliced genes that encode distinct, non-overlapping peptides, and numerous nested genes. CONCLUSIONS: Identification of so many unusual gene models not only suggests that some mechanisms for gene regulation are more prevalent than previously believed, but also underscores the complex challenges of eukaryotic gene prediction. At present, experimental data and human curation remain essential to generate high-quality genome annotations

Low-NO atmospheric oxidation pathways in a polluted megacity

The impact of emissions of volatile organic compounds (VOCs) to the atmosphere on the production of secondary pollutants, such as ozone and secondary organic aerosol (SOA), is mediated by the concentration of nitric oxide (NO). Polluted urban atmospheres are typically considered to be “high-NO” environments, while remote regions such as rainforests, with minimal anthropogenic influences, are considered to be “low NO”. However, our observations from central Beijing show that this simplistic separation of regimes is flawed. Despite being in one of the largest megacities in the world, we observe formation of gas- and aerosol-phase oxidation products usually associated with low-NO “rainforest-like” atmospheric oxidation pathways during the afternoon, caused by extreme suppression of NO concentrations at this time. Box model calculations suggest that during the morning high-NO chemistry predominates (95 %) but in the afternoon low-NO chemistry plays a greater role (30 %). Current emissions inventories are applied in the GEOS-Chem model which shows that such models, when run at the regional scale, fail to accurately predict such an extreme diurnal cycle in the NO concentration. With increasing global emphasis on reducing air pollution, it is crucial for the modelling tools used to develop urban air quality policy to be able to accurately represent such extreme diurnal variations in NO to accurately predict the formation of pollutants such as SOA and ozone

In situ ozone production is highly sensitive to volatile organic compounds in Delhi, India

The Indian megacity of Delhi suffers from some of the poorest air quality in the world. While ambient NO₂ and particulate matter (PM) concentrations have received considerable attention in the city, high ground-level ozone (O₃) concentrations are an often overlooked component of pollution. O₃ can lead to significant ecosystem damage and agricultural crop losses, and adversely affect human health. During October 2018, concentrations of speciated non-methane hydrocarbon volatile organic compounds (C₂–C₁₃), oxygenated volatile organic compounds (o-VOCs), NO, NO₂, HONO, CO, SO₂, O₃, and photolysis rates, were continuously measured at an urban site in Old Delhi. These observations were used to constrain a detailed chemical box model utilising the Master Chemical Mechanism v3.3.1. VOCs and NOx (NO + NO₂) were varied in the model to test their impact on local O₃ production rates, P(O₃), which revealed a VOC-limited chemical regime. When only NOx concentrations were reduced, a significant increase in P(O₃) was observed; thus, VOC co-reduction approaches must also be considered in pollution abatement strategies. Of the VOCs examined in this work, mean morning P(O₃) rates were most sensitive to monoaromatic compounds, followed by monoterpenes and alkenes, where halving their concentrations in the model led to a 15.6 %, 13.1 %, and 12.9 % reduction in P(O₃), respectively. P(O₃) was not sensitive to direct changes in aerosol surface area but was very sensitive to changes in photolysis rates, which may be influenced by future changes in PM concentrations. VOC and NOx concentrations were divided into emission source sectors, as described by the Emissions Database for Global Atmospheric Research (EDGAR) v5.0 Global Air Pollutant Emissions and EDGAR v4.3.2_VOC_spec inventories, allowing for the impact of individual emission sources on P(O₃) to be investigated. Reducing road transport emissions only, a common strategy in air pollution abatement strategies worldwide, was found to increase P(O₃), even when the source was removed in its entirety. Effective reduction in P(O₃) was achieved by reducing road transport along with emissions from combustion for manufacturing and process emissions. Modelled P(O₃) reduced by ∼ 20 ppb h−1 when these combined sources were halved. This study highlights the importance of reducing VOCs in parallel with NOx and PM in future pollution abatement strategies in Delhi

eXtraembryonic ENdoderm (XEN) Stem Cells Produce Factors that Activate Heart Formation

Initial specification of cardiomyocytes in the mouse results from interactions between the extraembryonic anterior visceral endoderm (AVE) and the nascent mesoderm. However the mechanism by which AVE activates cardiogenesis is not well understood, and the identity of specific cardiogenic factors in the endoderm remains elusive. Most mammalian studies of the cardiogenic potential of the endoderm have relied on the use of cell lines that are similar to the heart-inducing AVE. These include the embryonal-carcinoma-derived cell lines, END2 and PYS2. The recent development of protocols to isolate eXtraembryonic ENdoderm (XEN) stem cells, representing the extraembryonic endoderm lineage, from blastocyst stage mouse embryos offers new tools for the genetic dissection of cardiogenesis.Here, we demonstrate that XEN cell-conditioned media (CM) enhances cardiogenesis during Embryoid Body (EB) differentiation of mouse embryonic stem (ES) cells in a manner comparable to PYS2-CM and END2-CM. Addition of CM from each of these three cell lines enhanced the percentage of EBs that formed beating areas, but ultimately, only XEN-CM and PYS2-CM increased the total number of cardiomyocytes that formed. Furthermore, our observations revealed that both contact-independent and contact-dependent factors are required to mediate the full cardiogenic potential of the endoderm. Finally, we used gene array comparison to identify factors in these cell lines that could mediate their cardiogenic potential.These studies represent the first step in the use of XEN cells as a molecular genetic tool to study cardiomyocyte differentiation. Not only are XEN cells functionally similar to the heart-inducing AVE, but also can be used for the genetic dissection of the cardiogenic potential of AVE, since they can be isolated from both wild type and mutant blastocysts. These studies further demonstrate the importance of both contact-dependent and contact-independent factors in cardiogenesis and identify potential heart-inducing proteins in the endoderm

Seasonality of the Meridional Overturning Circulation in the subpolar North Atlantic

Understanding the variability of the Atlantic Meridional Overturning Circulation is essential for better predictions of our changing climate. Here we present an updated time series (August 2014 to June 2020) from the Overturning in the Subpolar North Atlantic Program. The 6-year time series allows us to observe the seasonality of the subpolar overturning and meridional heat and freshwater transports. The overturning peaks in late spring and reaches a minimum in early winter, with a peak-to-trough range of 9.0 Sv. The overturning seasonal timing can be explained by winter transformation and the export of dense water, modulated by a seasonally varying Ekman transport. Furthermore, over 55% of the total meridional freshwater transport variability can be explained by its seasonality, largely owing to overturning dynamics. Our results provide the first observational analysis of seasonality in the subpolar North Atlantic overturning and highlight its important contribution to the total overturning variability observed to date