A linear diffusivity model of near-surface, cross-shore particle dispersion from a numerical simulation of central California’s coastal ocean

A simple diffusion model of cross-shore mixing employing an inhomogeneous diffusivity is applied to near-surface particle dispersion within a high-resolution numerical model of the central California coastal ocean. The theoretical model employs a linear diffusivity, Ky = νy, where y is the cross-shore coordinate and ν a constant, as traditionally assumed for wall-layer flows. A realistic implementation of the Regional Ocean Modeling System (ROMS) is used to generate hundreds of thousands of three-dimensional, passive particle trajectories. Particles were released daily along the inner shelf for one model year, 2002, tracked for 16 days and treated statistically as an instantaneous point-source release. Application of the theoretical model to the observed moments of particle position yielded estimates for the offshore slope of the diffusivity, ν ∼ 3 – 4 cm s–1. Using this value, the cross-shore particle density was well described over the outer continental shelf and slope by an analytical solution to the theoretical model. Unlike wall turbulence, the implied mixing length was not equal to the distance from the coast, but was found to be equal to the local first mode internal Rossby radius of deformation. The successful theoretical model has many potential applications, such as quantifying the amount of offshore larval loss from the shelf and/or carbon loss from the coastal upwelling zone

Dispersion and connectivity estimates along the U.S. west coast from a realistic numerical model

Near-surface particle dispersion, larval dispersal and connectivity along the U.S west coast were explored using a realistic numerical model of the California Current System. Seasonal model velocities were qualitatively and quantitatively evaluated using Global Drifter Program data. The model displayed a clear seasonal cycle of eddy energy near the coast with energy maxima southwest of major headlands. Eddy speeds were correlated with drifter-based estimates during summer and fall when compared spatially. Over six million passive, Lagrangian particles were released in the upper 20 m of the water column within 10 km of the California and Oregon coasts and tracked for 7 years. The effect of subgridscale vertical turbulence was parameterized with a random walk model. Resulting trajectories yielded climatological maps of particle dispersion. Particle densities varied with release region, release season and time-since-release. Dispersal distances and coastal connectivity varied with season of release, release location, release depth and pelagic larval duration (PLD). Connectivity was clearly influenced by major geographic features such as the Gulf of the Farallones and Cape Mendocino. Given a moderate (30–60 day) PLD, mean dispersal distances varied from ∼10–230 km, with standard deviations of ∼130–220 km. For release locations from Palos Verdes to Point Sur, the primary direction of dispersal was northward for a moderate PLD, regardless of season. For long PLDs (120–180 day), mean dispersal distances were larger (∼40–440 km), with standard deviations of ∼330–540 km. In winter given a long PLD, dispersal was primarily southward for release locations north of Point Arena. Increasing release depths to 40–60 m altered mean dispersal distances by 50–250 km polewards, but had little effect on standard deviations. Point Conception did not act as a barrier to dispersal for source regions in the Southern California Bight

Factors affecting follower responses to movement calls in cooperatively breeding dwarf mongooses

In social species, individuals maximize the benefits of group living by remaining cohesive and coordinating their actions. Communication is key to collective action, including ensuring that group members move together; individuals often produce signals when attempting to lead a group to a new area. However, the function of these signals, and how responses to them are affected by intrinsic characteristics of the caller and extrinsic factors, has rarely been experimentally tested. We conducted a series of field-based playback experiments with habituated wild dwarf mongooses, Helogale parvula, a cooperatively breeding and territorial species, to investigate follower responses to movement calls. In our first experiment, we found that focal individuals were more likely to respond to playback of ‘movement calls’ than control ‘close calls’, indicating movement calls function as recruitment signals. In a second experiment, we found that focal individuals responded similarly to the movement calls of dominant and subordinate groupmates, suggesting that dominance status (an intrinsic factor) does not influence receiver responses. In a final experiment, we found that individuals responded to the simulated presence of a rival group, but that this outgroup conflict (an extrinsic factor) did not affect responses to movement calls compared to a control situation. This may be because attention is instead focused on the potential presence of an imminent threat. By using playbacks to isolate the acoustic signal from physical movement cues, our results provide experimental evidence of how movement calls help leaders to attract followers and thus adds to our understanding of recruitment signals more generally

Supplementary data and analysis for estimating walleye selectivity

This document has been issued as VIMS Data Report 61 and provides data tables and results of exploratory analyses conducted as part of the complete data analysis for Myers et al. 2014 published in the Transactions of the American Fisheries Society. Estimates of size- and sex-specific selectivity of fishing gear are important for making informed management decisions. We distinguish between capture selectivity – the relative catchability of the components of the population – and harvest selectivity, which is the combined effects of capture selectivity and the decision to retain or release a fish of a given population component. We used short-term recaptures from three extensive tagging programs in Minnesota and Wisconsin to estimate directly the size- and sex- specific selectivity of angling for captured and for harvested walleye Sander vitreus, and of spear fishing for harvested walleye. Estimates were obtained using generalized linear models with an information-theoretic approach to determining the significance of individual and interactive effects of length and sex on selectivity. The primary conclusions of this research are presented in Myers et al. 2014. Residual analyses for the models presented in the manuscript, results of unpublished exploratory analyses, and the complete data set used to conduct the analyses are presented in this supplementary document. Through this data report, interested readers can repeat the analyses conducted in Myers et al. 2014, as well as see the results of additional analyses not presented in the primary publication

Search for Nanosecond Near-infrared Transients around 1280 Celestial Objects

Stars and planetary system

Dynamic Analysis of Vascular Morphogenesis Using Transgenic Quail Embryos

Background: One of the least understood and most central questions confronting biologists is how initially simple clusters or sheet-like cell collectives can assemble into highly complex three-dimensional functional tissues and organs. Due to the limits of oxygen diffusion, blood vessels are an essential and ubiquitous presence in all amniote tissues and organs. Vasculogenesis, the de novo self-assembly of endothelial cell (EC) precursors into endothelial tubes, is the first step in blood vessel formation [1]. Static imaging and in vitro models are wholly inadequate to capture many aspects of vascular pattern formation in vivo, because vasculogenesis involves dynamic changes of the endothelial cells and of the forming blood vessels, in an embryo that is changing size and shape. Methodology/Principal Findings: We have generated Tie1 transgenic quail lines Tg(tie1:H2B-eYFP) that express H2B-eYFP in all of their endothelial cells which permit investigations into early embryonic vascular morphogenesis with unprecedented clarity and insight. By combining the power of molecular genetics with the elegance of dynamic imaging, we follow the precise patterning of endothelial cells in space and time. We show that during vasculogenesis within the vascular plexus, ECs move independently to form the rudiments of blood vessels, all while collectively moving with gastrulating tissues that flow toward the embryo midline. The aortae are a composite of somatic derived ECs forming its dorsal regions and the splanchnic derived ECs forming its ventral region. The ECs in the dorsal regions of the forming aortae exhibit variable mediolateral motions as they move rostrally; those in more ventral regions show significant lateral-to-medial movement as they course rostrally. Conclusions/Significance: The present results offer a powerful approach to the major challenge of studying the relative role(s) of the mechanical, molecular, and cellular mechanisms of vascular development. In past studies, the advantages of the molecular genetic tools available in mouse were counterbalanced by the limited experimental accessibility needed for imaging and perturbation studies. Avian embryos provide the needed accessibility, but few genetic resources. The creation of transgenic quail with labeled endothelia builds upon the important roles that avian embryos have played in previous studies of vascular development

Dust Devil Tracks

Dust devils that leave dark- or light-toned tracks are common on Mars and they can also be found on the Earth’s surface. Dust devil tracks (hereinafter DDTs) are ephemeral surface features with mostly sub-annual lifetimes. Regarding their size, DDT widths can range between ∼1 m and ∼1 km, depending on the diameter of dust devil that created the track, and DDT lengths range from a few tens of meters to several kilometers, limited by the duration and horizontal ground speed of dust devils. DDTs can be classified into three main types based on their morphology and albedo in contrast to their surroundings; all are found on both planets: (a) dark continuous DDTs, (b) dark cycloidal DDTs, and (c) bright DDTs. Dark continuous DDTs are the most common type on Mars. They are characterized by their relatively homogenous and continuous low albedo surface tracks. Based on terrestrial and martian in situ studies, these DDTs most likely form when surficial dust layers are removed to expose larger-grained substrate material (coarse sands of ≥500 μm in diameter). The exposure of larger-grained materials changes the photometric properties of the surface; hence leading to lower albedo tracks because grain size is photometrically inversely proportional to the surface reflectance. However, although not observed so far, compositional differences (i.e., color differences) might also lead to albedo contrasts when dust is removed to expose substrate materials with mineralogical differences. For dark continuous DDTs, albedo drop measurements are around 2.5 % in the wavelength range of 550–850 nm on Mars and around 0.5 % in the wavelength range from 300–1100 nm on Earth. The removal of an equivalent layer thickness around 1 μm is sufficient for the formation of visible dark continuous DDTs on Mars and Earth. The next type of DDTs, dark cycloidal DDTs, are characterized by their low albedo pattern of overlapping scallops. Terrestrial in situ studies imply that they are formed when sand-sized material that is eroded from the outer vortex area of a dust devil is redeposited in annular patterns in the central vortex region. This type of DDT can also be found in on Mars in orbital image data, and although in situ studies are lacking, terrestrial analog studies, laboratory work, and numerical modeling suggest they have the same formation mechanism as those on Earth. Finally, bright DDTs are characterized by their continuous track pattern and high albedo compared to their undisturbed surroundings. They are found on both planets, but to date they have only been analyzed in situ on Earth. Here, the destruction of aggregates of dust, silt and sand by dust devils leads to smooth surfaces in contrast to the undisturbed rough surfaces surrounding the track. The resulting change in photometric properties occurs because the smoother surfaces have a higher reflectance compared to the surrounding rough surface, leading to bright DDTs. On Mars, the destruction of surficial dust-aggregates may also lead to bright DDTs. However, higher reflective surfaces may be produced by other formation mechanisms, such as dust compaction by passing dust devils, as this may also cause changes in photometric properties. On Mars, DDTs in general are found at all elevations and on a global scale, except on the permanent polar caps. DDT maximum areal densities occur during spring and summer in both hemispheres produced by an increase in dust devil activity caused by maximum insolation. Regionally, dust devil densities vary spatially likely controlled by changes in dust cover thicknesses and substrate materials. This variability makes it difficult to infer dust devil activity from DDT frequencies. Furthermore, only a fraction of dust devils leave tracks. However, DDTs can be used as proxies for dust devil lifetimes and wind directions and speeds, and they can also be used to predict lander or rover solar panel clearing events. Overall, the high DDT frequency in many areas on Mars leads to drastic albedo changes that affect large-scale weather patterns

Reinventing grounded theory: some questions about theory, ground and discovery

Grounded theory’s popularity persists after three decades of broad-ranging critique. In this article three problematic notions are discussed—‘theory,’ ‘ground’ and ‘discovery’—which linger in the continuing use and development of grounded theory procedures. It is argued that far from providing the epistemic security promised by grounded theory, these notions—embodied in continuing reinventions of grounded theory—constrain and distort qualitative inquiry, and that what is contrived is not in fact theory in any meaningful sense, that ‘ground’ is a misnomer when talking about interpretation and that what ultimately materializes following grounded theory procedures is less like discovery and more akin to invention. The procedures admittedly provide signposts for qualitative inquirers, but educational researchers should be wary, for the significance of interpretation, narrative and reflection can be undermined in the procedures of grounded theory

The macroecology of infectious diseases: a new perspective on global-scale drivers of pathogen distributions and impacts

© 2016 John Wiley & Sons Ltd/CNRS. Identifying drivers of infectious disease patterns and impacts at the broadest scales of organisation is one of the most crucial challenges for modern science, yet answers to many fundamental questions remain elusive. These include what factors commonly facilitate transmission of pathogens to novel host species, what drives variation in immune investment among host species, and more generally what drives global patterns of parasite diversity and distribution? Here we consider how the perspectives and tools of macroecology, a field that investigates patterns and processes at broad spatial, temporal and taxonomic scales, are expanding scientific understanding of global infectious disease ecology. In particular, emerging approaches are providing new insights about scaling properties across all living taxa, and new strategies for mapping pathogen biodiversity and infection risk. Ultimately, macroecology is establishing a framework to more accurately predict global patterns of infectious disease distribution and emergence

Experiences of treatment decision making for young people diagnosed with depressive disorders: a qualitative study in primary care and specialist mental health settings

<p>Abstract</p> <p>Background</p> <p>Clinical guidelines advocate for the inclusion of young people experiencing depression as well as their caregivers in making decisions about their treatment. Little is known, however, about the degree to which these groups are involved, and whether they want to be. This study sought to explore the experiences and desires of young people and their caregivers in relation to being involved in treatment decision making for depressive disorders.</p> <p>Methods</p> <p>Semi-structured interviews were carried out with ten young people and five caregivers from one primary care and one specialist mental health service about their experiences and beliefs about treatment decision making. Interviews were audio taped, transcribed verbatim and analysed using thematic analysis.</p> <p>Results</p> <p>Experiences of involvement for clients varied and were influenced by clients themselves, clinicians and service settings. For caregivers, experiences of involvement were more homogenous. Desire for involvement varied across clients, and within clients over time; however, most clients wanted to be involved at least some of the time. Both clients and caregivers identified barriers to involvement.</p> <p>Conclusions</p> <p>This study supports clinical guidelines that advocate for young people diagnosed with depressive disorders to be involved in treatment decision making. In order to maximise engagement, involvement in treatment decision making should be offered to all clients. Involvement should be negotiated explicitly and repeatedly, as desire for involvement may change over time. Caregiver involvement should be negotiated on an individual basis; however, all caregivers should be supported with information about mental disorders and treatment options.</p