Influence of osmotic and metal stresses on nitrogenase activity of cyanobacteria ýsolated from paddy fields

Samples were collected from paddy fields in Corum-Turk.ye. Nitrogen-free BG-11 medium was used for isolation of nitrogen fixing cyanobacteria. Acetylene reduction technique was used to determine the effects of different chemical agents on the nitrogenase activities of the cyanobacteria, which were identified at the genus level. Nostoc showed the highest nitrogenase activity (0.09 ethylene ƒÊl/mg.h) at 50 mM salt concentration. At 60 mM sucrose concentration, Nostoc showed the highest nitrogenase activity (0.08 ethylene ƒÊl/mg.h). The highest tolerances for the metals were present in Anabaena (0.006 ethylene ƒÊl/mg.h) for iron (20 ppm), Nodularia 0.1 ethylene ƒÊl/mg.h (for manganese 20 ppm) and Nostoc 0.96 ethylene ƒÊl/mg.h (for zinc 5 ppm)

Improved thermal isolation of silicon suspended platforms for an all-silicon thermoelectric microgenerator based on large scale integration of Si nanowires as thermoelectric material

Special suspended micro-platforms have been designed as a part of silicon compatible planar thermoelectric microgenerators. Bottom-up grown silicon nanowires are going to bridge in the future such platforms to the surrounding silicon bulk rim. They will act as thermoelectric material thus configuring an all-silicon thermoelectric device. In the new platform design other additional bridging elements (usually auxiliary support silicon beams) are substituted by low conductance thin film dielectric membranes in order to maximize the temperature difference developed between both areas. These membranes follow a sieve-like design that allows fabricating them with a short additional wet anisotropic etch step. © Published under licence by IOP Publishing Ltd.Peer ReviewedPostprint (published version

Supporting Intelligent and Trustworthy Maritime Path Planning Decisions

The risk of maritime collisions and groundings has dramatically increased in the past five years despite technological advancements such as GPS-based navigation tools and electronic charts which may add to, instead of reduce, workload. We propose that an automated path planning tool for littoral navigation can reduce workload and improve overall system efficiency, particularly under time pressure. To this end, a Maritime Automated Path Planner (MAPP) was developed, incorporating information requirements developed from a cognitive task analysis, with special emphasis on designing for trust. Human-in-the-loop experimental results showed that MAPP was successful in reducing the time required to generate an optimized path, as well as reducing path lengths. The results also showed that while users gave the tool high acceptance ratings, they rated the MAPP as average for trust, which we propose is the appropriate level of trust for such a system.This work was sponsored by Rite Solutions Inc., Assett Inc., Mikel Inc., and the Office of Naval Research. We would also like to thank Northeast Maritime Institute, the MIT NROTC detachment, the crew of the USS New Hampshire, and the anonymous reviewers whose comments significantly improved the paper

The Q loops of the human multidrug resistance transporter ABCB1 are necessary to couple drug binding to the ATP catalytic cycle

For a primary active pump, such as the human ATP-binding-cassette (ABC) transporter ABCB1, coupling of drug-binding by the two transmembrane domains (TMDs) to the ATP catalytic cycle of the two nucleotide-binding domains (NBDs) is fundamental to the transport mechanism, but is poorly understood at the biochemical level. Structure data suggest that signals are transduced through intracellular loops of the TMDs that slot into grooves on the NBDs. At the base of these grooves is the Q loop. We therefore mutated the eponymous glutamine in one or both NBD Q loops and measured the effect on conformation and function by using a conformation-sensitive antibody (UIC2) and a fluorescent drug (Bodipy-verapamil), respectively. We showed that the double mutant is trapped in the inward-open state, which binds the drug, but cannot couple to the ATPase cycle. Our data also describe marked redundancy within the transport mechanism, because single-Q-loop mutants are functional for Bodipy-verapamil transport. This result allowed us to elucidate transduction pathways from twin drug-binding cavities to the Q loops using point mutations to favor one cavity over the other. Together, the data show that the Q loop is the central flexion point where the aspect of the drug-binding cavities is coupled to the ATP catalytic cycle.-Zolnerciks, J. K., Akkaya, B. G., Snippe, M., Chiba, P., Seelig, A., Linton, K. J. The Q loops of the human multidrug resistance transporter ABCB1 are necessary to couple drug binding to the ATP catalytic cycle

Isoforms of U1-70k control subunit dynamics in the human spliceosomal U1 snRNP

Most human protein-encoding genes contain multiple exons that are spliced together, frequently in alternative arrangements, by the spliceosome. It is established that U1 snRNP is an essential component of the spliceosome, in human consisting of RNA and ten proteins, several of which are post- translationally modified and exist as multiple isoforms. Unresolved and challenging to investigate are the effects of these post translational modifications on the dynamics, interactions and stability of the particle. Using mass spectrometry we investigate the composition and dynamics of the native human U1 snRNP and compare native and recombinant complexes to isolate the effects of various subunits and isoforms on the overall stability. Our data reveal differential incorporation of four protein isoforms and dynamic interactions of subunits U1-A, U1-C and Sm-B/B’. Results also show that unstructured post- ranslationally modified C-terminal tails are responsible for the dynamics of Sm-B/B’ and U1-C and that their interactions with the Sm core are controlled by binding to different U1-70k isoforms and their phosphorylation status in vivo. These results therefore provide the important functional link between proteomics and structure as well as insight into the dynamic quaternary structure of the native U1 snRNP important for its function.This work was funded by: BBSRC (OVM), BBSRC and EPSRC (HH and NM), EU Prospects (HH), European Science Foundation (NM), the Royal Society (CVR), and fellowship from JSPS and HFSP (YM and DAPK respectively)

A role for neuronal cAMP responsive-element binding (CREB)-1 in brain responses to calorie restriction

Calorie restriction delays brain senescence and prevents neurodegeneration, but critical regulators of these beneficial responses other than the NAD(+)-dependent histone deacetylase Sirtuin-1 (Sirt-1) are unknown. We report that effects of calorie restriction on neuronal plasticity, memory and social behavior are abolished in mice lacking cAMP responsive-element binding (CREB)-1 in the forebrain. Moreover, CREB deficiency drastically reduces the expression of Sirt-1 and the induction of genes relevant to neuronal metabolism and survival in the cortex and hippocampus of dietary-restricted animals. Biochemical studies reveal a complex interplay between CREB and Sirt-1: CREB directly regulates the transcription of the sirtuin in neuronal cells by binding to Sirt-1 chromatin; Sirt-1, in turn, is recruited by CREB to DNA and promotes CREB-dependent expression of target gene peroxisome proliferator-activated receptor-\u3b3 coactivator-1\u3b1 and neuronal NO Synthase. Accordingly, expression of these CREB targets is markedly reduced in the brain of Sirt KO mice that are, like CREB-deficient mice, poorly responsive to calorie restriction. Thus, the above circuitry, modulated by nutrient availability, links energy metabolism with neurotrophin signaling, participates in brain adaptation to nutrient restriction, and is potentially relevant to accelerated brain aging by overnutrition and diabetes

Hybrid EEFIT mission to february 2023 Kahramanmaraş earthquake sequence

The southwestern part of Türkiye was hit on 6 February 2023 by an Mw 7.8 (epicentre:Pazarcık) and then an Mw 7.5 earthquake (epicentre: Elbistan). The event was followed by tensof thousands of aftershocks including the Mw 6.3 event on 20 February (epicentre: Uzunbağ).This paper reports on the preliminary findings of the mission organised by the UK’s EarthquakeEngineering Field Investigation Team (EEFIT) to the Kahramanmaraş Earthquake sequence ofFebruary 2023. This mission followed a hybrid model, combining field and remote investigationtechniques, to investigate the characteristics of the earthquake sequence, its impact on buildingsand infrastructure, as well as the efficacy of relief, response and recovery operations. The keymessages include that the building stock is hard to categorise which brings along difficulties withdamage assessment, that the recovery and reconstruction require multi-sectoral engagement ofkey stakeholders, and that the auditing and quality control mechanisms within the constructionindustry need revisiting in the way forward for better disaster resilience in Türkiye

BoostingTree: parallel selection of weak learners in boosting, with application to ranking

Boosting algorithms have been found successful in many areas of machine learning and, in particular, in ranking. For typical classes of weak learners used in boosting (such as decision stumps or trees), a large feature space can slow down the training, while a long sequence of weak hypotheses combined by boosting can result in a computationally expensive model. In this paper we propose a strategy that builds several sequences of weak hypotheses in parallel, and extends the ones that are likely to yield a good model. The weak hypothesis sequences are arranged in a boosting tree, and new weak hypotheses are added to promising nodes (both leaves and inner nodes) of the tree using some randomized method. Theoretical results show that the proposed algorithm asymptotically achieves the performance of the base boosting algorithm applied. Experiments are provided in ranking web documents and move ordering in chess, and the results indicate that the new strategy yields better performance when the length of the sequence is limited, and converges to similar performance as the original boosting algorithms otherwise. © 2013 The Author(s)

The Türki̇ye earthquake sequence of February 2023: A longitudinal study report by EEFIT

On 6 February 2023 at 4:17 am local time, a large area in southeastern Türkiye and northern Syria was hit by an Mw 7.8 earthquake, which was followed by an Mw 7.5 earthquake at 1:24 pm local time, causing the loss of more than 50,000 lives, some 100,000 injuries and significant damage to buildings and infrastructure, estimated to be in the range of 84.1 billion USD for Türkiye alone. The largest earthquake in Türkiye since the deadly 1939 Erzincan earthquake with however much larger losses, the sequence immediately attracted the attention of the global post-disaster reconnaissance/engineering communities. This included the Earthquake Engineering Field Investigation Team (EEFIT), who, within one week of the event, gathered a team with 30 people from academia and industry in the UK (19), Türkiye (5), New Zealand (1), Hungary (1), Bulgaria (1), Greece (1) and USA (1) with two support members from the UK and the Netherlands, to study the events and their impacts, and also to develop suggestions to reduce the existing vulnerabilities in the future. The team was organised in the form of 6 working groups as shown below, which were (1) strong ground motions and seismotectonics, (2) geotechnics, (3) structures, (4) infrastructure, (5) remote sensing and (6) relief response and recovery