COVID-19, A Global Health Concern Requiring Science-Based Solutions

Scientifically-based concrete action points to reduce the spread, lessen the impact, reduce the concerns of the wider population, and avoid further outbreaks for governments, organizations, and individuals are neededFinal Published versio

Novel sources of resistance to blast disease in finger millet

Finger millet (Eleusine coracana(L.) Gaertn. subsp.coracana) is the most importantmillet in eastern Africa and perhaps the oldest domesticated cereal grain in Africa.One of the major factors limiting finger millet production is blast disease caused bythe fungusMagnaporthe grisea. Crop wild relatives and landraces present a poten-tial source of novel genes. This study investigated the response of cultivated and wildrelatives of finger millet to an isolate of blast disease from western Kenya. Previousgermplasm collections were purified through two generations of single-seed descentbefore screening alongside improved and farmer-preferred varieties (FPVs) under ascreen house across three seasons. Farmer-preferred varieties were identified throughparticipatory varietal selection (PVS). The plants were inoculated twice during eachgrowth period using hand-spraying method and data on disease incidence recorded atgrain-filling stage. Genotypic data was generated using diversity arrays technology(DArT) sequencing and data analysis done using Genstat 18.2 and TASSEL 5.2.58.We observed high heritability (81%), indicating that the variation observed was pre-dominantly genetic. Wild accessions were generally more resistant to the disease incomparison to the cultivated accessions. Preliminary genome-wide association study(GWAS) using general linear model with principal component analysis led to theidentification of 19 markers associated with blast disease that will be be developedinto assays for genotype quality control and trait introgression. Wild accessions andlandraces of finger millet present a good reservoir for novel genes that can be incor-porated into crop improvement programs

Identification of SNP and SSR Markers in Finger Millet Using Next Generation Sequencing Technologies

Finger millet is an important cereal crop in eastern Africa and southern India with excellent grain storage quality and unique ability to thrive in extreme environmental conditions. Since negligible attention has been paid to improving this crop to date, the current study used Next Generation Sequencing (NGS) technologies to develop both Simple Sequence Repeat (SSR) and Single Nucleotide Polymorphism (SNP) markers. Genomic DNA from cultivated finger millet genotypes KNE755 and KNE796 was sequenced using both Roche 454 and Illumina technologies. Non-organelle sequencing reads were assembled into 207 Mbp representing approximately 13% of the finger millet genome. We identified 10,327 SSRs and 23,285 non-homeologous SNPs and tested 101 of each for polymorphism across a diverse set of wild and cultivated finger millet germplasm. For the 49 polymorphic SSRs, the mean polymorphism information content (PIC) was 0.42, ranging from 0.16 to 0.77. We also validated 92 SNP markers, 80 of which were polymorphic with a mean PIC of 0.29 across 30 wild and 59 cultivated accessions. Seventy-six of the 80 SNPs were polymorphic across 30 wild germplasm with a mean PIC of 0.30 while only 22 of the SNP markers showed polymorphism among the 59 cultivated accessions with an average PIC value of 0.15. Genetic diversity analysis using the polymorphic SNP markers revealed two major clusters; one of wild and another of cultivated accessions. Detailed STRUCTURE analysis confirmed this grouping pattern and further revealed 2 sub-populations within wild E. coracana subsp. africana. Both STRUCTURE and genetic diversity analysis assisted with the correct identification of the new germplasm collections. These polymorphic SSR and SNP markers are a significant addition to the existing 82 published SSRs, especially with regard to the previously reported low polymorphism levels in finger millet. Our results also reveal an unexploited finger millet genetic resource that can be included in the regional breeding programs in order to efficiently optimize productivity

Age and context of the oldest known hominin fossils from Flores

Recent excavations at the early Middle Pleistocene site of Mata Menge in the So\u27a Basin of central Flores, Indonesia, have yielded hominin fossils1 attributed to a population ancestral to Late Pleistocene Homo floresiensis2. Here we describe the age and context of the Mata Menge hominin specimens and associated archaeological findings. The fluvial sandstone layer from which the in situ fossils were excavated in 2014 was deposited in a small valley stream around 700 thousand years ago, as indicated by 40Ar/39Ar and fission track dates on stratigraphically bracketing volcanic ash and pyroclastic density current deposits, in combination with coupled uranium-series and electron spin resonance dating of fossil teeth. Palaeoenvironmental data indicate a relatively dry climate in the So\u27a Basin during the early Middle Pleistocene, while various lines of evidence suggest the hominins inhabited a savannah-like open grassland habitat with a wetland component. The hominin fossils occur alongside the remains of an insular fauna and a simple stone technology that is markedly similar to that associated with Late Pleistocene H. floresiensis

Effectiveness of inoculation with rumen fluid containing Synergistes jonesii to control DHP toxicity in ruminants in eastern Indonesia

The feasibility and efficacy of inoculating with rumen fluid as a method to control hydroxypyridone (DHP) toxicity in ruminants on high leucaena diets in eastern Indonesia were investigated. Rumen fluid collected from 2 buffalo identified as 'protected', due to low levels of DHP excretion in urine, was orally administered to animals identified as 'unprotected' and concentrations of urinary DHP monitored. Control animals were dosed with water only. Treatments were randomly allocated to 10 recipient animals: 3 goats and 7 cattle. All animals were fed a diet containing freshly cut 100% leucaena during the 18 day study period. Measurement of urinary DHP via colorimetric analysis commenced 8 days prior to animals being drenched with rumen fluid or water and continued for 10 days afterwards. Urinary DHP levels in animals that received the inoculum did not differ from those in the control group 10 days post-inoculation (mean 425 mg DHP/L; P = 0.50). Unexpectedly, DHP levels in all animals (rumen fluid and water) declined with time, although the difference did not reach statistical significance (P = 0.12), and remained above considered safe threshold levels. These results suggest that transfer of rumen fluid to overcome leucaena toxicity in animals in eastern Indonesia may not be effective despite great care having been taken to ensure the viability of the anaerobic organisms during the inoculation process; this methodology is also not a practical solution to replicate on a commercial scale. The findings suggest that inoculation may not be necessary if animals previously naïve to leucaena are able to adapt to DHP toxicity by other means

An integrative geochronological framework for the pleistocene So'a basin (Flores, Indonesia), and its implications for faunal turnover and hominin arrival

Flores represents a unique insular environment with an extensive record of Pleistocene fossil remains and stone artefacts. In the So\u27a Basin of central Flores these include endemic Stegodon, Komodo dragons, giant tortoises, rats, birds and hominins, and lithic artefacts that can be traced back to at least one million years ago (1 Ma). This comprehensive review presents important new data regarding the dating and faunal sequence of the So\u27a Basin, including the site of Mata Menge where Homo floresiensis-like fossils dating to approximately 0.7 Ma were discovered in 2014. By chemical fingerprinting key silicic tephra originating from local and distal eruptive sources we have now established basin-wide tephrostratigraphic correlations, and, together with new numerical ages, present an update of the chronostratigraphy of the So\u27a Basin, with major implications for the faunal sequence. These results show that a giant tortoise and the diminutive proboscidean Stegodon sondaari last occurred at the site of Tangi Talo ∼1.3 Ma, and not 0.9 Ma as previously thought. We also present new data suggesting that the disappearance of giant tortoise and S. sondaari from the sedimentary record occurred before, and/or was coincident with, the earliest hominin arrival, as evidenced by the first records of lithic artefacts occurring directly below the 1 Ma Wolo Sege Tephra. Artefacts become common in the younger layers, associated with a distinct fauna characterized by the medium-sized Stegodon florensis and giant rat Hooijeromys nusatenggara. Furthermore, we describe a newly discovered terrace fill, which extends the faunal record of Stegodon in the So\u27a Basin to the Late Pleistocene. Our evidence also suggests that the paleoenvironment of the So\u27a Basin became drier around the time of the observed faunal transition and arrival of hominins on the island, which could be related to an astronomically-forced climate response at the onset of the Mid-Pleistocene Transition (MPT; ∼1.25 Ma) leading to increased aridity and monsoonal intensity

The Changes in Seed Germination Capacity, Seedling Growth, and Leaf Morphology of Ficus variegata Blume Influenced by Gamma-Ray Irradiation

Gamma irradiation treatments have commonly been applied to induce variation in plant genetic improvement programs. The improvement of nyawai (Ficus variegata Blume) is urgently needed mainly to break the seed dormancy, increase seedling growth, and induce variation for selecting desired traits. This research aimed to assess the effect of gamma irradiation doses on seed germination, seedling growth, and leaf morphology of Ficus variegate Blume. This experiment's irradiation doses ranged from 5-240 Gy and were applied to seeds with varying levels of vigor based on the artificial seed aging process. The data displayed a positive relationship between low doses of gamma irradiation and the nyawai seed's endurance. Low irradiation doses, 5 to 30 Gy, are deemed capable of promoting seedling development, leaf retention, and diversity in leaf structure. The higher irradiation doses than 30 Gy decreased seedling growth, leaf number, and seedling survival. In addition, these doses also affect some morphological changes, including seedling height and leaf length and width