Integrating traditional field methods with emerging digital techniques for enhanced outcrop analysis of deep water channel-fill deposits

The development of emerging digital technologies that allow the collection and analysis of field data represents a significant innovation in field-based geological studies. The integration of these digital techniques with traditional sedimentological field methods facilitates considerable improvements in outcrop characterization. An example of this integrated modern approach for geological data collection is employed for the detailed characterization of a turbidite channel-lobe system of the Gorgoglione Flysch Formation in Southern Italy. The study area, exposed above the village of Castelmezzano, has been measured and described in detailed stratigraphic sections, providing data for both sedimentological analysis and correlation of the stratigraphy. In order to gain a complete perspective on the exposure and stratigraphic elements, analysis of physical outcrop data was enhanced by the use of high-resolution Gigapixel imagery and 3D photogrammetric outcrop reconstructions. The Santa Maria section has been assessed in terms of vertical and lateral facies stacking arrangements and subdivided into two component facies associations separated by a prominent concave-up erosional boundary. The lower facies association, interpreted as a frontal lobe complex, consists of tabular, thick-bedded coarse sandstones interbedded with persistent heterolithic packages of thin-bedded sandstones and mudstones, and minor soft-sediment deformed strata. The upper facies association represents the infill of a channel-form and consists of a basal conglomerate, passing gradually upwards into massive amalgamated sandstones overlain by large-scale cross-laminated sandstones. The excellent exposure of the Santa Maria section records the complete evolution of a channel-lobe system, transitioning from frontal lobe deposition through channel incision and bypass, to progressive backfilling. This study shows how facies characterization, stratigraphic correlations and reconstruction of the depositional architectures have been substantially enhanced by the use of emerging digital techniques for geological data collection

Distribution and paleoenvironmental framework of middle Miocene marine vertebrates along the western side of the lower Ica Valley (East Pisco Basin, Peru).

We report 130 vertebrate fossils preserved as bony elements and the co-occurring assemblage of fish teeth and spines from the lower strata of the Pisco Formation exposed along the western side of the lower Ica Valley (East Pisco Basin, Peru). Geological mapping at 1:10,000 scale reveals that all these fossils originate from the Langhian–Serravallian P0 allomember. In the study area, P0 is up to ∼40 m thick and features a sandy lower portion, reflecting shoreface deposition, that fines upwards into a package of offshore silts. Marine vertebrates only occur in the lower sandy layers and include whales, dolphins, reptiles, birds, and bony and cartilaginous fishes. The reconstructed paleoenvironment is consistent with a warm-water, marginal marine setting with a strong connection to the open ocean. This work helps to elucidate the rich yet still poorly understood middle Miocene portions of the Pisco Formation, and highlights the need to conserve this outstanding Fossil-Lagerstätte

Facies analysis, stratigraphy and marine vertebrate assemblage of the lower Miocene Chilcatay Formation at Ullujaya (Pisco basin, Peru)

This paper is the first integrated account of the sedimentology, stratigraphy and vertebrate paleontology for the marine strata of the Chilcatay Formation exposed at Ullujaya, Pisco basin (southern Peru). An allostratigraphic framework for the investigated strata was established using geological mapping (1:4,000 scale) and conventional sedimentary facies analysis and resulted in recognition of two unconformity-bounded allomembers (designated Ct1 and Ct2 in ascending order). The chronostratigraphic framework is well constrained by integration of micropaleontological data and isotope geochronology and indicates deposition during the early Miocene. The marine vertebrate fossil assemblage is largely dominated by cetaceans (odontocetes), whereas isolated teeth and spines indicate a well-diversified elasmobranch assemblage. Our field surveys, conducted to evaluate the paleontological sensitivity of the investigated strata, indicate that vertebrate remains only came from a rather restricted stratigraphic interval of the Ct1 allomember and reveal the high potential for these sediments to yield abundant and scientifically significant fossil assemblages

Stratigraphic framework of the late Miocene Pisco Formation at Cerro Los Quesos (Ica Desert, Peru)

The enormous concentration of marine vertebrates documented within the Pisco Formation is unique for Peru and South America and places this unit among the prime fossil Lagerstätten for Miocene to Pliocene marine mammals worldwide. In order to provide a robust stratigraphic framework for the fossil-bearing locality of Cerro Los Quesos, this study presents a 1:10,000 scale geological map covering an area of about 21 km2, a detailed measured section spanning 290 m of strata, and a refined chronostratigraphy for the studied succession well constrained by diatom biostratigraphy and high-resolution 40Ar/39Ar isotopic dating of three interbedded ash layers. Within the apparently monotonous, diatomite-dominated sedimentary section, the Pisco Formation has been subdivided into six local members, with stratigraphic control over the different outcrops facilitated by the establishment of a detailed marker bed stratigraphy based on fifteen readily distinguishable sediment layers of different nature

Depositional architecture of sand-attached and sand-detached channel-lobe transition zones on an exhumed stepped slope mapped over a 2500 km2 area

The geomorphology and seismic stratigraphy of deep-water clastic systems from slope valleys through channel-levee systems to basin-floor fans have been observed and described in modern and ancient sub surface examples around the world. However, the distribution of sedimentary facies, grain size, and small-scale architectural elements remains poorly constrained. Extensive exposures (>2500 km2) of four stacked deep-water composite sequences have been mapped from heterolithic channel-levee systems on the slope to sand-rich basin-floor deposits. The data set from Units C-F of the Fort Brown Formation in the Permian Laingsburg depocenter of South Africa permits a unique opportunity to document and compare their depositional architecture at a high resolution for tens of kilometers downdip. Isopach thickness maps indicate that compensational stacking across multiple stratigraphic scales occurs on the basin floor, whereas preferred axial pathways were present on the slope, leading to subvertical stacking patterns. Units C and D are sand-attached systems; slope valley systems are mapped to pass transitionally downslope through leveeconfined channels to lobe complexes over distances of >30 km. The slope valley fills of Units E and F, however, are separated from their downdip sand-rich lobe complexes by a thin, sand-poor tract several kilometers in length and are termed sand detached. Locally, this sand-poor tract is characterized by a distinctive facies association of thin-bedded turbidites with numerous scours mantled with rip-up clasts, and a top surface that includes megaflutes and remobilized sediments. This assemblage is interpreted to indicate a widespread area of sand bypass. This unique data set provides an exploration- scale insight and understanding of how different segments of a prograding slope evolved over time in terms of gradient, physiography, and hence the degree to which sand was stored or bypassed to the basin floor, and the evolution from sand-attached to sand-detached systems. The development of sand-detached systems suggests that a steeper gradient formed, possibly related to developing underlying structure, that led to the development of a stepped slope profile. The study highlights that updip stratigraphic trapping at reservoir scale can occur with minor bathymetric changes

Genomic investigations of unexplained acute hepatitis in children

Since its first identification in Scotland, over 1,000 cases of unexplained paediatric hepatitis in children have been reported worldwide, including 278 cases in the UK1. Here we report an investigation of 38 cases, 66 age-matched immunocompetent controls and 21 immunocompromised comparator participants, using a combination of genomic, transcriptomic, proteomic and immunohistochemical methods. We detected high levels of adeno-associated virus 2 (AAV2) DNA in the liver, blood, plasma or stool from 27 of 28 cases. We found low levels of adenovirus (HAdV) and human herpesvirus 6B (HHV-6B) in 23 of 31 and 16 of 23, respectively, of the cases tested. By contrast, AAV2 was infrequently detected and at low titre in the blood or the liver from control children with HAdV, even when profoundly immunosuppressed. AAV2, HAdV and HHV-6 phylogeny excluded the emergence of novel strains in cases. Histological analyses of explanted livers showed enrichment for T cells and B lineage cells. Proteomic comparison of liver tissue from cases and healthy controls identified increased expression of HLA class 2, immunoglobulin variable regions and complement proteins. HAdV and AAV2 proteins were not detected in the livers. Instead, we identified AAV2 DNA complexes reflecting both HAdV-mediated and HHV-6B-mediated replication. We hypothesize that high levels of abnormal AAV2 replication products aided by HAdV and, in severe cases, HHV-6B may have triggered immune-mediated hepatic disease in genetically and immunologically predisposed children