Storm hazards '79: F-106B operations summary

Preliminary flight tests with a F-106B aircraft were made on the periphery of isolated thunder cells using weather radar support. In addition to storm hazards correlation research, a direct-strike lightning measurement experiment and an atmospheric chemistry experiment were conducted. Two flights were made to close proximity to lightning generating cumulonimbus clouds; however, no direct lightning strikes were experienced. Although no discernible lightning transients were recorded, many operational techniques were identified and established

Quantitative Nondestructive Density Determinations of Very Low-Density Carbon Foams

Carbon foams have been manufactured at EG&G Mound Applied Technologies through the use of a salt replica process [1,2] that has been modified by a Mound propriety process [3]. Applications of these foams have been described in an early publication [4]. In the basic process [1,2] of manufacturing the foams, salt is pressed into bars; the bars are then cured, infused with polymer and cured again. The salt is then removed by copious solvent rinsings and finally carbonized into very porous and light-weight, briquette-like material [2,5]. In this paper, the carbon density and the carbon distribution in various foams were determined either by bulk measurements of weight and volume or by x-ray computed tomography (CT)

Experimental Gonococcal Infection in Male Volunteers: Cumulative Experience with Neisseria gonorrhoeae Strains FA1090 and MS11mkC

Experimental infection of male volunteers with Neisseria gonorrhoeae is safe and reproduces the clinical features of naturally acquired gonococcal urethritis. Human inoculation studies have helped define the natural history of experimental infection with two well-characterized strains of N. gonorrhoeae, FA1090 and MS11mkC. The human model has proved useful for testing the importance of putative gonococcal virulence factors for urethral infection in men. Studies with isogenic mutants have improved our understanding of the requirements for gonococcal LOS structures, pili, opacity proteins, IgA1 protease, and the ability of infecting organisms to obtain iron from human transferrin and lactoferrin during uncomplicated urethritis. The model also presents opportunities to examine innate host immune responses that may be exploited or improved in development and testing of gonococcal vaccines. Here we review results to date with human experimental gonorrhea

Annotation-based genome-wide SNP discovery in the large and complex Aegilops tauschii genome using next-generation sequencing without a reference genome sequence

<p>Abstract</p> <p>Background</p> <p>Many plants have large and complex genomes with an abundance of repeated sequences. Many plants are also polyploid. Both of these attributes typify the genome architecture in the tribe Triticeae, whose members include economically important wheat, rye and barley. Large genome sizes, an abundance of repeated sequences, and polyploidy present challenges to genome-wide SNP discovery using next-generation sequencing (NGS) of total genomic DNA by making alignment and clustering of short reads generated by the NGS platforms difficult, particularly in the absence of a reference genome sequence.</p> <p>Results</p> <p>An annotation-based, genome-wide SNP discovery pipeline is reported using NGS data for large and complex genomes without a reference genome sequence. Roche 454 shotgun reads with low genome coverage of one genotype are annotated in order to distinguish single-copy sequences and repeat junctions from repetitive sequences and sequences shared by paralogous genes. Multiple genome equivalents of shotgun reads of another genotype generated with SOLiD or Solexa are then mapped to the annotated Roche 454 reads to identify putative SNPs. A pipeline program package, AGSNP, was developed and used for genome-wide SNP discovery in <it>Aegilops tauschii-</it>the diploid source of the wheat D genome, and with a genome size of 4.02 Gb, of which 90% is repetitive sequences. Genomic DNA of <it>Ae. tauschii </it>accession AL8/78 was sequenced with the Roche 454 NGS platform. Genomic DNA and cDNA of <it>Ae. tauschii </it>accession AS75 was sequenced primarily with SOLiD, although some Solexa and Roche 454 genomic sequences were also generated. A total of 195,631 putative SNPs were discovered in gene sequences, 155,580 putative SNPs were discovered in uncharacterized single-copy regions, and another 145,907 putative SNPs were discovered in repeat junctions. These SNPs were dispersed across the entire <it>Ae. tauschii </it>genome. To assess the false positive SNP discovery rate, DNA containing putative SNPs was amplified by PCR from AL8/78 and AS75 and resequenced with the ABI 3730 xl. In a sample of 302 randomly selected putative SNPs, 84.0% in gene regions, 88.0% in repeat junctions, and 81.3% in uncharacterized regions were validated.</p> <p>Conclusion</p> <p>An annotation-based genome-wide SNP discovery pipeline for NGS platforms was developed. The pipeline is suitable for SNP discovery in genomic libraries of complex genomes and does not require a reference genome sequence. The pipeline is applicable to all current NGS platforms, provided that at least one such platform generates relatively long reads. The pipeline package, AGSNP, and the discovered 497,118 <it>Ae. tauschii </it>SNPs can be accessed at (<url>http://avena.pw.usda.gov/wheatD/agsnp.shtml</url>).</p

Coupling in-depth genome annotations with genome editing technology for harnessing genomic variation to promote precision breeding in tropical soybean.

ABSTRACT: Directional selection during crop domestication and advanced breeding has resulted in significant changes in plant genomes. The extent of intraspecific variation in a crop documents domestication and highlights variants underlying complex traits. Studies demonstrate that most naturally occurring variants in crops are low frequency, and only a small fraction of those might have important functions to trait variation. To understand the inheritance of quantitative traits, diversity panels have become available by crossing inbred lines to produce genomic maps that relate phenotypic variation to recombination and ultimately to genome structure. Using these resources, genomics studies have suggested that selection performs poorly in pericentromeric regions because of reduced recombination frequency (RF). Thus, manipulating RF and meiotic crossover location is an appealing issue to advance crop breeding. In our study, we are using genomic analysis to characterize intragenomic diversity of tropical elite soybean lines in terms of heterozygosity, RF, chromatin structure and accessibility. Our results to date include the generation of draft genome assemblies for two soybean advanced lines using PACBIO long-read sequencing, Chromium Linked-Reads sequencing and an approach rooted in polymer physics that determines the most likely genome structure using chromosomal contact data. In-depth genome-wide characterization is ongoing using ATAC-Seq and Parent-Progeny resequencing. We also present our efforts to apply DNA-free editing tools in implementing genetic alterations that are expected to engineer desirable traits in soybeans by modifying meiotic specific expression. These changes are expected to increase genetic and epigenetic variations with favorable outcomes in seed oil and protein pathway regulation. Financial support: Embrapa-Monsanto Fund/Project:03.17.03.002.00.0

Structure and oxidation kinetics of the Si(100)-SiO2 interface

We present first-principles calculations of the structural and electronic properties of Si(001)-SiO2 interfaces. We first arrive at reasonable structures for the c-Si/a-SiO2 interface via a Monte-Carlo simulated annealing applied to an empirical interatomic potential, and then relax these structures using first-principles calculations within the framework of density-functional theory. We find a transition region at the interface, having a thickness on the order of 20\AA, in which there is some oxygen deficiency and a corresponding presence of sub-oxide Si species (mostly Si^+2 and Si^+3). Distributions of bond lengths and bond angles, and the nature of the electronic states at the interface, are investigated and discussed. The behavior of atomic oxygen in a-SiO2 is also investigated. The peroxyl linkage configuration is found to be lower in energy than interstitial or threefold configurations. Based on these results, we suggest a possible mechanism for oxygen diffusion in a-SiO2 that may be relevant to the oxidation process.Comment: 7 pages, two-column style with 6 postscript figures embedded. Uses REVTEX and epsf macros. Also available at http://www.physics.rutgers.edu/~dhv/preprints/index.html#ng_sio

Stability of Solid State Reaction Fronts

We analyze the stability of a planar solid-solid interface at which a chemical reaction occurs. Examples include oxidation, nitridation, or silicide formation. Using a continuum model, including a general formula for the stress-dependence of the reaction rate, we show that stress effects can render a planar interface dynamically unstable with respect to perturbations of intermediate wavelength

Three Keys to Success for Principals (and Their Teachers)

This is the author's accepted manuscript, post peer-review. The publisher's official version is available at: http://dx.doi.org/10.1080/00228958.2008.10516527.What is successful leadership and how can leadership concepts be applied to schools? Hundreds of books and articles and a plethora of executive seminars describe what leadership is and propose strategies for what effective leaders do. Most of these writings and presentations, however, focus on business, with much less information available about how to lead schools. In addition, there is a diversity of opinions about what makes leaders effective. This article suggests that it is possible to extract, reframe, and apply the best of what is known about leadership to help principals be more successful. Moreover, if principals are successful, teachers also are positioned to be successful, with the ultimate impact being successful student learning

The surface composition of six newly discovered chemically peculiar stars. Comparison to the HgMn stars μ\mu Lep and β\beta Scl and the superficially normal B star ν\nu Cap

We report on a detailed abundance study of six bright, mostly southern, slowly rotating late B stars: HD~1279 (B8III), HD~99803 (B9V), HD~123445 (B9V), HD~147550 (B9V), HD~171961 (B8III) and HD~202671 (B5II/III), hitherto reported as normal stars. We compare them to the two classical HgMn stars $\mu$ Lep and $\beta$ Scl and to the superficially normal star, $\nu$ Cap. In the spectra of the six stars, the \ion{Hg}{2} line at 3984 \AA\ line is clearly seen and numerous lines of P, Ti, Mn, Fe, Ga, Sr, Y, and Zr appear to be strong absorbers. A comparison of newly acquired and archival spectra of these objects with a grid of synthetic spectra for selected unblended lines reveals large overabundances of P, Ti, Cr, Mn, Sr, Y, Zr, Ba, Pt and Hg and underabundances of He, Mg, Sc and Ni. The effective temperatures, surface gravities, low projected rotational velocities and the peculiar abundance patterns of the six investigated stars show that they are new chemically peculiar stars, mostly new HgMn stars, and are reclassified as such. The evolutionary status of these stars has been inferred and their ages and masses estimated. The two most massive objects, HD~1279 and HD~202671, might have evolved away from the main-sequence recently, the other stars are main-sequence objects. HD~99803A is a sharp lined HgMn star with grazing eclipses; from TESS and MASCARA photometry we determine an orbital period of $P_{\rm orb} = 26.12022 \pm 0.00004$\,d.Comment: 54 pages, accepted in The Astronomical Journal. arXiv admin note: substantial text overlap with arXiv:1908.0502

Overall survival results of a trial assessing patient-reported outcomes for symptom monitoring during routine cancer treatment

Symptoms are common among patients receiving treatment for advanced cancers, yet are undetected by clinicians up to half the time. There is growing interest in integrating electronic patient-reported outcomes (PROs) into routine oncology practice for symptom monitoring, but evidence demonstrating clinical benefit has been limited