Study On The Introgression Of Beef Breeds In Canchim Cattle Using Single Nucleotide Polymorphism Markers

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)The aim of this study was to evaluate the level of introgression of breeds in the Canchim (CA: 62.5% Charolais-37.5% Zebu) and MA genetic group (MA: 65.6% Charolais-34.4% Zebu) cattle using genomic information on Charolais (CH), Nelore (NE), and Indubrasil (IB) breeds. The number of animals used was 395 (CA and MA), 763 (NE), 338 (CH), and 37 (IB). The Bovine 50SNP BeadChip from Illumina panel was used to estimate the levels of introgression of breeds considering the Maximum likelihood, Bayesian, and Single Regression method. After genotype quality control, 32,308 SNPs were considered in the analysis. Furthermore, three thresholds to prune out SNPs in linkage disequilibrium higher than 0.10, 0.05, and 0.01 were considered, resulting in 15,286, 7,652, and 1,582 SNPs, respectively. For k = 2, the proportion of taurine and indicine varied from the expected proportion based on pedigree for all methods studied. For k = 3, the Regression method was able to differentiate the animals in three main clusters assigned to each purebred breed, showing more reasonable according to its biological viewpoint. Analyzing the data considering k = 2 seems to be more appropriate for Canchim-MA animals due to its biological interpretation. The usage of 32,308 SNPs in the analyses resulted in similar findings between the estimated and expected breed proportions. Using the Regression approach, a contribution of Indubrasil was observed in Canchim-MA when k = 3 was considered. Genetic parameter estimation could account for this breed composition information as a source of variation in order to improve the accuracy of genetic models. Our findings may help assemble appropriate reference populations for genomic prediction for Canchim-MA in order to improve prediction accuracy. Using the information on the level of introgression in each individual could also be useful in breeding or crossing design to improve individual heterosis in crossbred cattle. © 2017 Buzanskas et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.12202663/09-0, CAPES, Coordenação de Aperfeiçoamento de Pessoal de Nível Superior449564/2014-2, CNPq, Conselho Nacional de Desenvolvimento Científico e TecnológicoCoordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq

Fredholm methods for billiard eigenfunctions in the coherent state representation

We obtain a semiclassical expression for the projector onto eigenfunctions by means of the Fredholm theory. We express the projector in the coherent state basis, thus obtaining the semiclassical Husimi representation of the stadium eigenfunctions, which is written in terms of classical invariants: periodic points, their monodromy matrices and Maslov indices.Comment: 12 pages, 10 figures. Submitted to Phys. Rev. E. Comments or questions to [email protected]

Semiclassical quantization of the hydrogen atom in crossed electric and magnetic fields

The S-matrix theory formulation of closed-orbit theory recently proposed by Granger and Greene is extended to atoms in crossed electric and magnetic fields. We then present a semiclassical quantization of the hydrogen atom in crossed fields, which succeeds in resolving individual lines in the spectrum, but is restricted to the strongest lines of each n-manifold. By means of a detailed semiclassical analysis of the quantum spectrum, we demonstrate that it is the abundance of bifurcations of closed orbits that precludes the resolution of finer details. They necessitate the inclusion of uniform semiclassical approximations into the quantization process. Uniform approximations for the generic types of closed-orbit bifurcation are derived, and a general method for including them in a high-resolution semiclassical quantization is devised

How to dissect viral infections and their interplay with the host-proteome by immunoaffinity and mass spectrometry: A tutorial

The capabilities of bioanalytical mass spectrometry to (i) detect and differentiate viruses at the peptide level whilst maintaining high sample throughput and (ii) to provide diagnosis and prognosis for infected patients are presented as a tutorial in this work to aid analytical chemists and physicians to gain insights into the possibilities offered by current high-resolution mass spectrometry technology and bioinformatics. From (i) sampling to sample treatment; (ii) Matrix-Assisted Laser Desorption Ionization- to Electrospray Ionization -based mass spectrometry; and (iii) from clustering to peptide sequencing; a detailed step-by-step guide is provided and exemplified using SARS-CoV-2 Spike Y839 variant and the variant of concern SARS-CoV-2 Alpha (B.1.1.7 lineage), Influenza B, and Influenza A subtypes AH1N1pdm09 and AH3N2.Highlights: - Immunohistochemistry with magnetic core nanoparticles to isolate viruses. - The use of MALDI-MS for rapid virus detection is explained in detail; - The use of ESI-MS/MS to pinpoint host-patient crosstalk is explained in detail. - The absolute quantitative MS is explained for large-scale protein quantitation.This work received financial support from PT national funds (FCT/MCTES) through the projects UIDB/50006/2020 and UIDP/50006/2020 and from PROTEOMASS Scientific Society through the projects #PM001/2019 and #PM003/2016.info:eu-repo/semantics/publishedVersio

Oral Melanoacanthoma And Oral Melanotic Macule: A Report Of 8 Cases, Review Of The Literature, And Immunohistochemical Analysis

Oral melanoacanthoma (MA) is a rare, benign pigmented lesion, similar to cutaneous MA, characterized by hyperplasia of spinous keratinocytes and dendritic melanocytes. The pathogenesis of oral MA remains uncertain, although its clinical behavior is suggestive of a reactive origin. The most common intraoral sites are the buccal mucosa, lip, palate and gingiva. The average age of presentation is 28 years, mainly in blacks, with a strong female predilection. The oral melanotic macule (MM) is a small, well-circumscribed brown-to-black macule that occurs on the lips and mucous membranes. The etiology is not clear and it may represent a physiologic or reactive process. The average age of presentation is 43 years, with a female predilection. A biopsy is recommended to distinguish these lesions from each other and from other oral melanocytic lesions. We depict four cases each of oral MA and MM, affecting Caucasian and Latin American mestizo patients. The clinicopathological features of these cases reflect its ample spectrum, and to the best of our knowledge, it is the first example of oral MA affecting a Caucasian boy reported in the English literature. Therefore oral MA and MM should be considered in the differential diagnosis of pigmented lesions in the oral mucosa in these populations. © Medicina Oral.125E374E379Mishima, Y., Pinkus, H., Benign mixed tumor of melanocytes and malpighian cells. Melanoacanthoma: Its relationship to Bloch's benign non-nevoid melanoepithelioma (1960) Arch Dermatol, 81, pp. 539-550Buchner, A., Merrell, P.W., Carpenter, W.M., Relative frequency of solitary melanocytic lesions of the oral mucosa (2004) J Oral Pathol Med, 33, pp. 550-557Wright, J.M., Binnie, W.H., Byrd, D.L., Dunsworth, A.R., Intraoral melanoacanthomas (1983) J Periodontol, 54, pp. 107-111Buchner, A., Merrell, P., Hanson, L., Leider, A., Melanocytic hyperplasia of the oral mucosa (1991) Oral Surg, Oral Med Oral Pathol, 71, pp. 58-62Wright, J.M., Intraoral melanoacanthoma: A reactive melanocytic hyperplasia. Case report (1988) J Periodontol, 59, pp. 53-55Tomich, C., Zunt, S.L., Melanoacanthosis (melanoacanthoma) of the oral mucosa (1990) J Dermatol Surg Oncol, 16, pp. 231-236Contreras, E., Carlos, R., Oral melanoacanthosis (melanoachantoma): Report of a case and review of the literature (2005) Med Oral Patol Oral Cir Bucal, 10 (1), pp. 11-12,9-11Fornatora, M.L., Reich, R.F., Haber, S., Solomon, F., Freedman, P.D., Oral melanoacanthomas: A report of 10 cases, review of the literature, and immunohistochemical analysis for HMB-45 reactivity (2003) Am J Dermatopathol, 25, pp. 12-15Matsuoka, L.Y., Glasser, S., Barsky, S., Melanoacanthoma of the lip (1979) Arch Dermatol, 115, pp. 1116-1117Goode, R.K., Crawford, B.E., Callihan, M.D., Neville, B.W., Oral melanoacanthoma. Review of the literature and report of ten cases (1983) Oral Surg Oral Med Oral Pathol, 56, pp. 622-628Scheneider, L.C., Mesa, M.L., Haber, S.M., Melanoacanthoma of the oral mucosa (1981) Oral Surg Oral Med Oral Pathol, 52, pp. 284-287Fatahzadeh, M., Sirois, D.A., Multiple intraoral melanoacanthomas: A case report with unusual findings (2002) Oral Surg Oral Med Oral Pathol Oral Radiol Endod, 94, pp. 54-56Ho, K.K., Dervan, P., O'Loughlin, S., Powell, F.C., Labial melanotic macule: A clinical, histopathologic, and ultrastructural study (1993) J Am Acad of Dermatol, 28, pp. 33-39Sexton, F.M., Maize, J.C., Melanotic macules and melanoacanthomas of the lip. A comparative study with census of the basal melanocyte population (1987) Am J Dermatopathol, 9, pp. 438-444Horlick, H.P., Walther, R.R., Zegarelli, D.J., Silvers, D.N., Eliezri, Y.D., Mucosal melanotic macule, reactive type: A simulation of melanoma (1988) J Am Acad Dermatol, 19, pp. 786-791Buchner, A., Hansen, L.S., Pigmented nevi of the oral mucosa: A clinicopathologic study of 32 new cases and review of 75 cases from the literature: Part I. A clinicopathologic study of 32 new cases (1979) Oral Surg Oral Med Oral Pathol, 48, pp. 131-142Barker, B.F., Carpenter, W.M., Daniels, T.E., Kahn, M.A., Leider, A.S., Lozada-Nur, F., (1997) Oral mucosal melanomas: The WESTOP Banff workshop proceedings, 83, pp. 672-679. , Western Society of Teachers of Oral Pathology. Oral Surg Oral Med Oral Pathol Oral Radiol EndodBarrett, A.W., Raja, A.M., The immunohistochemical identification of human oral mucosal melanocytes (1997) Arch Oral Biol, 42, pp. 77-8

Experimental infection of chickens by a flagellated motile strain of Salmonella enterica serovar Gallinarum biovar Gallinarum

Salmonella enterica subsp. enterica serovar Gallinarum biovar Gallinarum (SG) causes fowl typhoid (FT), a septicaemic disease which can result in high mortality in poultry flocks. The absence of flagella in SG is thought to favour systemic invasion, since bacterial recognition via Toll-like receptor (TLR)-5 does not take place during the early stages of FT. In the present study, chicks susceptible to FT were inoculated with a wild type SG (SG) or its flagellated motile derivative (SG Fla+). In experiment 1, mortality and clinical signs were assessed, whereas in experiment 2, gross pathology, histopathology, systemic invasion and immune responses were evaluated. SG Fla+ infection resulted in later development of clinical signs, lower mortality, lower bacterial numbers in the liver and spleen, and less severe pathological changes compared to SG. The CD8+ T lymphocyte population was higher in the livers of chicks infected with SG at 4 days post-inoculation (dpi). Chicks infected with SG had increased expression of interleukin (IL)-6 mRNA in the caecal tonsil at 1 dpi and increased expression of IL-18 mRNA in the spleen at 4 dpi. In contrast, the CD4+ T lymphocyte population was higher at 6 dpi in the livers of birds infected with SG Fla+. Therefore, flagella appeared to modulate the chicken immune response towards a CD4+ T profile, resulting in more efficient bacterial clearance from systemic sites and milder infection

The need for communication between clinicians and pathologists in the context of oral and maxillofacial diseases

Good communication between clinicians and pathologists is a vital element in the diagnostic process, and poor communication can adversely affect patient care. There is a lack of research about communication in diagnostic oral and maxillofacial pathology. This narrative review explores different aspects of the quality of communication between clinicians and oral pathologists, with a focus on the diagnosis of oral and maxillofacial diseases. An electronic search was carried out in MEDLINE through the PubMed, Scopus, and Embase databases up to April 2021. No studies reporting communication, its adequacy or the required skills between clinicians and pathologists in oral diagnosis were found. According to studies published in medicine, strategies for improving communication skills include clinician-pathologist collaboration; a well-formatted, clear and thorough report; training in communication skills; and patient-centered care. Further studies evaluating the current practices and quality in oral and maxillofacial pathology are required to identify barriers and encourage optimal communication to facilitate diagnosis, as well as patient safety